*2014/04/24 14:15:45.98 *IOS HEADER VERSION 1.10 2011/10/26 2011/10/26 *FILE START TIME : UTC 2013/07/12 19:39:05.000 TIME INCREMENT : 0 0 0 0.416667E-01 0 ! (day hr min sec ms) NUMBER OF RECORDS : 80 DATA DESCRIPTION : CTD FILE TYPE : ASCII CRC : 1A573F46 NUMBER OF CHANNELS : 8 $TABLE: CHANNELS ! No Name Units Minimum Maximum !--- -------------------------- --------------- -------------- -------------- 1 Pressure decibar 3 82 2 Temperature:Primary 'deg C (ITS90)' 8.57 10.0273 3 Fluorescence:URU:Wetlabs mg/m^3 0.499 1.91 4 pH:SBE:Nominal n/a 8.701 8.81 5 Salinity:T0:C0 PSS-78 31.4478 32.2705 6 Oxygen:Dissolved:SBE mL/L 3.167 4.368 7 Oxygen:Dissolved:SBE umol/kg 137.9303 190.397 8 Number_of_bin_records n/a 12 64 $END $TABLE: CHANNEL DETAIL ! No Pad Start Width Format Type Decimal_Places !--- ---- ----- ----- ------ ---- -------------- 1 -99 ' ' 7 F ' ' 1 2 -99 ' ' 9 F ' ' 4 3 -99 ' ' 8 F ' ' 3 4 -99 ' ' 8 F ' ' 3 5 -99 ' ' 9 F ' ' 4 6 -99 ' ' 7 F ' ' 2 7 -99 ' ' 6 F ' ' 1 8 ' ' ' ' 5 I I 0 $END $REMARKS This file converted from Sea-Bird file: P:\Cruise_Data_Processing\2013-43\Pro $END *ADMINISTRATION MISSION : 2013-43 AGENCY : 'PBS, Marine Ecosystems and Aquaculture Division,' CONTINUED : ' Nanaimo, B.C.' COUNTRY : Canada PROJECT : Salmon Marine Interactions SCIENTIST : Neville C. PLATFORM : W.E. Ricker *LOCATION GEOGRAPHIC AREA : Strait of Georgia STATION : JF04 EVENT NUMBER : 175 LATITUDE : 48 25.74000 N ! (deg min) LONGITUDE : 124 12.40000 W ! (deg min) WATER DEPTH : 90 *INSTRUMENT TYPE : Sea-Bird CTD MODEL : SBE-911plus SERIAL NUMBER : 506 $TABLE: SENSORS ! Name Abs Depth Serial No ! --------------------------------- -------------- ---------- Temperature ' ' 2106 Conductivity ' ' 1764 'Pressure:Digiquartz with TC' ' ' 0506 Temperature:2 ' ' 2663 Conductivity:2 ' ' 2424 'Oxygen:SBE 43' ' ' 1438 'Fluorometer:WET Labs ECO-AFL/FL' ' ' 2215 pH ' ' 0851 $END $REMARKS SOFTWARE VERSION SEASAVE V 7.22.4 $END *HISTORY $TABLE: PROGRAMS ! Name Vers Date Time Recs In Recs Out ! -------- ------ ---------- -------- --------- --------- SBE_IOS 3.3 2014/04/16 10:49:13 6128 6128 CLEAN 5.1 2014/04/16 10:54:33 6128 6128 MERGEHDR 1.2 2014/04/16 14:30:40 6128 6128 SHIFTDAT 3.4 2014/04/16 16:43:52 6128 6128 SHIFTDAT 3.4 2014/04/16 17:27:56 6128 6128 SHIFTDAT 3.4 2014/04/17 09:41:33 6128 6128 DELETE 6.3 2014/04/17 10:07:00 6128 2175 CTDEDIT 5.0.4 2014/04/21 15:42:27 2175 2098 CALIB 11.8 2014/04/23 16:40:44 2098 2098 FILTERS 4.3 2014/04/23 17:27:45 2098 2098 BINAVE 4.1.1 2014/04/23 17:28:54 2098 80 REMOVECH 8.2 2014/04/23 17:30:24 80 80 CHGUNITS 3.1 2014/04/23 17:44:48 80 80 REORDER 1.3 2014/04/23 17:45:02 ? ? HDREDIT2 2.6 2014/04/24 14:15:45 ? ? $END $REMARKS -CLEAN functions: 2014/04/16 10:52:53 20 Interpolation by Record Number, in Pressure Set event to last 4 characters of file name -The following SHIFT parameters were used. Shift Channel: Fluorescence:URU:Wetlabs:ECO-AFL # of Records to Advance (-ve for Delay): At REC# 0 Shift= 12.00 -The following SHIFT parameters were used. Shift Channel: Conductivity:Primary # of Records to Advance (-ve for Delay): At REC# 0 Shift= -0.60 Salinity was recalculated after shift -The following SHIFT parameters were used. Shift Channel: Conductivity:Secondary # of Records to Advance (-ve for Delay): At REC# 0 Shift= -1.30 Salinity was recalculated after shift -The following DELETE parameters were used: Surface Record Removal: Last Press Min Maximum Surface Pressure (relative): 10.00 Surface Swell Pressure Tolerance: 1.00 Pressure filtered over width: 15 Swells deleted. Warning message if pressure difference of 2.00 Drop rates < 0.30m/s (calculated over 11 points) will be deleted. Drop rate applies in the range 10.00 to 72.15 dbars Sample interval (from FILE section of header) = 0.042 seconds. -CTDEDIT v5.0.4 2014/04/21 15:42:27 77 records were deleted in this editing session. 113 changes in channel Salinity:T0:C0 -CALIB parameters: 2014/04/23 16:40:44 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = P:\Cruise_Data_Processing\2013-43\Processing\doc\2013-43-recal1.CCF Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 13 Oxygen:Dissolved:SBE mL/L 10 0.4180000E-01 0.1070600E+01 -The following FILTER parameters were used. Median filter was used. Filter width = 11 The following channel(s) were filtered. Fluorescence:URU:Wetlabs:ECO-AFL -The following BINAVE parameters were used: Bin channel = Pressure Averaging interval = 1.00 Minimum bin value = 0.000 Bin value was used Interpolated values were NOT used for empty bins Channel 'NUMBER_OF_BIN_RECORDS' was added to file. -REMOVECH 2014/04/23 17:30:24 The following CHANNEL(S) were removed: Scan_Number Temperature:Secondary [deg C (ITS90)] Conductivity:Primary [S/m] Conductivity:Secondary [S/m] Oxygen:Voltage:SBE [volts] Status:Pump Salinity:T1:C1 [PSS-78] Descent_Rate [m/s] Flag -CHANGE units: Temperature reference channel: Temperature* Salinity reference channel: Salinity:* 'Oxygen:Dissolved:SBE [mL/L]' changed from mL/L to umol/kg -HEADER EDITS: 2014/04/24 14:15:45 Applied edit header: P:\Cruise_Data_Processing\2013-43\Processing\doc\2013-43-HDR.TXT Channel 1: Pressure [decibar] Format: F10.3 ==> F7.1 Channel 6: Oxygen:Dissolved:SBE [mL/L] Format: F8.3 ==> F7.2 Channel 4: pH:SBE:Nominal [n/a] Name: pH:SBE ==> pH:SBE:Nominal Units: pH Units ==> n/a Channel 3: Fluorescence:URU:Wetlabs [mg/m^3] Name: Fluorescence:URU:Wetlabs:ECO-AFL ==> Fluorescence:URU:Wetlabs $END *COMMENTS SBE HEADER Sea-Bird SBE 9 Data File: FileName = C:\Data\2013-43\2013-43-0175.hex Software Version Seasave V 7.22.4 Temperature SN = 2106 Conductivity SN = 1764 Number of Bytes Per Scan = 30 Number of Voltage Words = 4 Number of Scans Averaged by the Deck Unit = 1 System UpLoad Time = Jul 12 2013 12:39:05 SBE 11plus V 5.1e number of scans to average = 1 pressure baud rate = 9600 NMEA baud rate = 4800 GPIB address = 1 advance primary conductivity 0.073 seconds advance secondary conductivity 0.073 seconds S> Ricker 2013-43 Station: JF04 Depth(m): 90m System UTC = Jul 12 2013 19:39:05 # nquan = 15 # nvalues = 6128 # units = specified # name 0 = scan: Scan Count # name 1 = prDM: Pressure, Digiquartz [db] # name 2 = t090C: Temperature [ITS-90, deg C] # name 3 = t190C: Temperature, 2 [ITS-90, deg C] # name 4 = c0S/m: Conductivity [S/m] # name 5 = c1S/m: Conductivity, 2 [S/m] # name 6 = flECO-AFL: Fluorescence, WET Labs ECO-AFL/FL [mg/m^3] # name 7 = sbeox0V: Oxygen raw, SBE 43 [V] # name 8 = ph: pH # name 9 = pumps: Pump Status # name 10 = sal00: Salinity, Practical [PSU] # name 11 = sal11: Salinity, Practical, 2 [PSU] # name 12 = sbeox0ML/L: Oxygen, SBE 43 [ml/l], WS = 1 # name 13 = dz/dtM: Descent Rate [m/s], WS = 1 # name 14 = flag: flag # span 0 = 1, 6128 # span 1 = 2.290, 82.146 # span 2 = 8.5665, 10.0529 # span 3 = 8.4801, 9.9648 # span 4 = 3.415184, 3.464178 # span 5 = 3.415437, 3.464575 # span 6 = 0.3965, 3.3647 # span 7 = 1.4822, 1.9231 # span 8 = 8.689, 8.820 # span 9 = 0, 1 # span 10 = 31.4383, 32.2746 # span 11 = 31.5025, 32.3547 # span 12 = 2.90940, 4.10555 # span 13 = -1.302, 1.239 # span 14 = 0.0000e+00, 0.0000e+00 # interval = seconds: 0.0416667 # start_time = Jul 12 2013 19:39:05 [System UTC, header] # bad_flag = -9.990e-29 # # # # # 2106 # 01-Apr-11 # 1 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.000 # 4.14706003e-003 # 6.31100076e-004 # 2.13431760e-005 # 2.18854475e-006 # 1000.000 # 1.00000000 # 0.0000 # # # # # # 1764 # 29-Mar-11 # 1 # # 0.0000 # 2000.0000 # 0 # # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.0 # -9.57000000e-008 # # # -4.15464915e+000 # 4.87579437e-001 # -6.56660246e-004 # 5.55755549e-005 # -9.57000000e-008 # 3.2500e-006 # # 0.00000000e+000 # # 1.00000000 # 0.00000 # # # # # # 0506 # 15-Apr-11 # -4.957807e+004 # -1.280011e+000 # 1.485710e-002 # 4.021200e-002 # 0.000000e+000 # 3.037224e+001 # -6.696188e-004 # 3.897170e-006 # 3.287590e-009 # 0.99998000 # -1.50650 # 0.000000e+000 # 1.280810e-002 # -9.210198e+000 # # # # # # 2663 # 01-Apr-11 # 1 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.000 # 4.37922733e-003 # 6.52156445e-004 # 2.50583016e-005 # 2.45150025e-006 # 1000.000 # 1.00000000 # 0.0000 # # # # # # 2424 # 29-Mar-11 # 1 # # 0.0000 # 2000.0000 # 0 # # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.0 # -9.57000000e-008 # # # -1.00422903e+001 # 1.46672240e+000 # 9.13089396e-004 # 5.03120339e-005 # -9.57000000e-008 # 3.2500e-006 # # 0.00000000e+000 # # 1.00000000 # 0.00000 # # # # # # # # # # # # 1438 # 02-Apr-11p # 1 # # # 0.0000 # 0.0000e+000 # 0.0000 # 0.00e+000 # 0.0000 # 0.0 # # # # 4.5380e-001 # -0.5130 # -1.7303e-003 # 7.3264e-005 # -1.4010e-006 # 2.5826e+000 # 1.92630e-004 # -4.64800e-002 # 3.6000e-002 # 1.3800 #

-3.3000e-002

#

5.0000e+003

#

1.4500e+003

# # # # # # # 2215 # June-19-2013 # 1.30000000e+001 # # 0.0159 # # # # # # 0851 # 29-May-12 # 4.5412 # 2.4967 # # # # # # # # # # # # # datcnv_date = Apr 16 2014 09:07:41, 7.22.5 [datcnv_vars = 10] # datcnv_in = P:\Cruise_Data_Processing\2013-43\RAW\CTD\2013-43_Leg3_12-20JUL\20 13-43-0175.hex P:\Cruise_Data_Processing\2013-43\Processing\doc\2013-43-ctd-post.xmlcon # datcnv_skipover = 0 # datcnv_ox_hysteresis_correction = yes # wildedit_date = Apr 16 2014 09:10:45, 7.22.5 # wildedit_in = P:\Cruise_Data_Processing\2013-43\Processing\convert\2013-43-017 5.cnv # wildedit_pass1_nstd = 2.0 # wildedit_pass2_nstd = 5.0 # wildedit_pass2_mindelta = 0.000e+000 # wildedit_npoint = 50 # wildedit_vars = prDM t090C t190C c0S/m c1S/m # wildedit_excl_bad_scans = yes # alignctd_date = Apr 16 2014 10:02:22, 7.22.5 # alignctd_in = P:\Cruise_Data_Processing\2013-43\Processing\wildedit\2013-43-01 75.cnv # alignctd_adv = sbeox0V 4.500 # celltm_date = Apr 16 2014 10:42:37, 7.22.5 # celltm_in = P:\Cruise_Data_Processing\2013-43\Processing\align\2013-43-0175.cn v # celltm_alpha = 0.0300, 0.0300 # celltm_tau = 7.0000, 7.0000 # celltm_temp_sensor_use_for_cond = primary, secondary # Derive_date = Apr 16 2014 10:43:57, 7.22.5 [derive_vars = 4] # Derive_in = P:\Cruise_Data_Processing\2013-43\Processing\celltm\2013-43-0175.c nv P:\Cruise_Data_Processing\2013-43\Processing\doc\2013-43-ctd-post.xmlcon # derive_time_window_docdt = seconds: 1 # derive_ox_tau_correction = yes # derive_time_window_dzdt = seconds: 1 # file_type = ascii END* Remarks from CTDEDIT: CTDEDIT was used to remove some records near the top of the cast and records corrupted by shed wakes; salinity was cleaned. Data Processing Notes: ---------------------- Fluorescence data are nominal and unedited except that some records were removed in editing temperature and salinity. The salinity calibration samples were lost. There are large differences between the 2 salinity and temperature channels. Post-cruise conductivity sensor calibrations showed no significant drift in those sensors, but there was no post-cruise information available for the temperature sensors at the time of initial processing. The secondary temperature sensor malfunctioned during an earlier cruise, so the primary temperature and salinity were selected for archiving. Salinity was not recalibrated, but recalibration will be applied later if the factory report on the primary temperature sensor indicates it is necessary. There was no calibration sampling for dissolved oxygen, but the results of a comparison with titrated samples during cruise 2013-16 was used to recalibrate the Dissolve Oxygen concentration. WARNING: The pH:SBE:Nominal data should be used with caution; no field calibration data were available at the time of processing. Calibration is required for each cast to get absolute values, although general trends within a cast are likely real. For details on the processing see processing report: 2013-43-proc.doc. *CALIBRATION $TABLE: CORRECTED CHANNELS ! Name Units Fmla Pad Coefficients ! ---------------------- ------ ---- ------ ------------ Oxygen:Dissolved:SBE mL/L 10 -99 () (0.418E-01 1.0706) $END !--1--- ---2---- ---3--- ---4--- ---5---- --6--- --7-- -8-- !Pressu Temperat Fluores pH:SBE: Salinity Oxygen Oxyge Numb !re ure: cence: Nominal :T0:C0 : n: er_o ! Primary URU: Dissol Disso ~bin ! Wetlabs ved: lved: _rec ! SBE SBE ords !------ -------- ------- ------- -------- ------ ----- ---- *END OF HEADER 3.0 10.0273 1.661 8.809 31.4478 4.37 190.4 12 4.0 9.9694 1.721 8.810 31.4567 4.35 189.6 32 5.0 9.9666 1.863 8.809 31.4575 4.31 188.0 30 6.0 9.9454 1.910 8.808 31.4606 4.30 187.5 28 7.0 9.9051 1.895 8.807 31.4659 4.30 187.4 27 8.0 9.9064 1.871 8.806 31.4669 4.28 186.4 26 9.0 9.8798 1.844 8.804 31.4691 4.19 182.5 27 10.0 9.9339 1.805 8.802 31.4636 4.11 179.1 26 11.0 9.7712 1.700 8.802 31.4885 4.09 178.1 23 12.0 9.7414 1.597 8.801 31.4961 4.09 178.1 22 13.0 9.6821 1.524 8.798 31.5086 4.08 178.0 24 14.0 9.6738 1.541 8.792 31.5175 4.07 177.2 29 15.0 9.6715 1.548 8.788 31.5234 4.07 177.2 28 16.0 9.6592 1.487 8.785 31.5257 4.06 177.1 18 17.0 9.6496 1.474 8.783 31.5284 4.06 176.9 25 18.0 9.6486 1.439 8.782 31.5321 4.05 176.6 26 19.0 9.6455 1.433 8.780 31.5343 4.02 175.2 27 20.0 9.6520 1.502 8.779 31.5339 3.99 174.1 27 21.0 9.6213 1.324 8.780 31.5441 3.99 173.9 19 22.0 9.5981 1.294 8.780 31.5529 3.98 173.5 23 23.0 9.5830 1.279 8.778 31.5617 3.97 172.8 25 24.0 9.5758 1.252 8.777 31.5679 3.95 172.2 32 25.0 9.5622 1.270 8.775 31.5686 3.94 171.5 23 26.0 9.5444 1.234 8.773 31.5722 3.91 170.3 24 27.0 9.5411 1.162 8.772 31.5741 3.90 169.9 17 28.0 9.5171 1.101 8.770 31.5805 3.89 169.6 23 29.0 9.4991 1.068 8.770 31.5869 3.85 167.8 30 30.0 9.4935 1.085 8.767 31.5892 3.79 165.0 30 31.0 9.4658 0.984 8.766 31.5972 3.75 163.4 24 32.0 9.3930 0.867 8.766 31.6243 3.74 163.0 22 33.0 9.3561 0.849 8.762 31.6405 3.73 162.4 25 34.0 9.3287 0.790 8.758 31.6528 3.71 161.5 31 35.0 9.3169 0.796 8.755 31.6596 3.67 159.9 29 36.0 9.2946 0.759 8.753 31.6728 3.66 159.4 24 37.0 9.2705 0.703 8.750 31.6824 3.69 160.8 22 38.0 9.2324 0.642 8.749 31.6936 3.73 162.3 23 39.0 9.2396 0.687 8.747 31.7047 3.72 161.9 25 40.0 9.2550 0.756 8.745 31.7353 3.65 159.0 32 41.0 9.2523 0.797 8.747 31.7411 3.57 155.6 31 42.0 9.1852 0.653 8.748 31.7475 3.56 155.2 25 43.0 9.1417 0.569 8.746 31.7548 3.56 155.0 23 44.0 9.1368 0.585 8.741 31.7570 3.56 155.0 22 45.0 9.1327 0.577 8.739 31.7599 3.55 154.6 23 46.0 9.1307 0.571 8.736 31.7608 3.54 154.3 26 47.0 9.1257 0.559 8.735 31.7647 3.54 154.2 26 48.0 9.1187 0.566 8.734 31.7704 3.54 154.1 32 49.0 9.1157 0.543 8.734 31.7715 3.50 152.7 29 50.0 9.1098 0.546 8.734 31.7748 3.46 150.9 22 51.0 9.0996 0.530 8.734 31.7797 3.43 149.3 21 52.0 9.0625 0.507 8.733 31.8058 3.41 148.6 25 53.0 8.9930 0.499 8.730 31.8627 3.41 148.6 28 54.0 8.9412 0.534 8.729 31.9182 3.40 148.1 24 55.0 8.9385 0.578 8.726 31.9425 3.38 147.2 23 56.0 8.9254 0.579 8.724 31.9530 3.37 146.6 20 57.0 8.8881 0.531 8.723 31.9737 3.36 146.4 20 58.0 8.8770 0.545 8.722 31.9786 3.36 146.3 29 59.0 8.8656 0.538 8.722 31.9878 3.36 146.3 25 60.0 8.8549 0.509 8.721 31.9959 3.36 146.4 25 61.0 8.8485 0.571 8.719 32.0090 3.35 145.9 25 62.0 8.8461 0.575 8.718 32.0195 3.35 146.1 24 63.0 8.8470 0.593 8.717 32.0202 3.34 145.5 23 64.0 8.8448 0.593 8.717 32.0243 3.33 145.1 23 65.0 8.8407 0.605 8.717 32.0294 3.32 144.7 20 66.0 8.8219 0.612 8.717 32.0465 3.32 144.6 28 67.0 8.8070 0.630 8.717 32.0612 3.32 144.5 12 68.0 8.7963 0.642 8.717 32.0719 3.30 143.9 27 69.0 8.7921 0.636 8.716 32.0764 3.29 143.1 20 70.0 8.7806 0.617 8.715 32.0876 3.28 142.8 23 71.0 8.7522 0.603 8.714 32.1047 3.27 142.4 25 72.0 8.7363 0.600 8.712 32.1151 3.27 142.2 28 73.0 8.7317 0.614 8.711 32.1213 3.26 142.0 28 74.0 8.7098 0.625 8.712 32.1465 3.25 141.6 25 75.0 8.7067 0.628 8.710 32.1509 3.24 141.1 25 76.0 8.6966 0.632 8.710 32.1621 3.23 140.6 30 77.0 8.6739 0.633 8.708 32.1877 3.23 140.5 28 78.0 8.6555 0.686 8.708 32.2098 3.21 139.9 30 79.0 8.6300 0.695 8.708 32.2222 3.19 138.9 43 80.0 8.6097 0.659 8.704 32.2328 3.17 138.3 64 81.0 8.5772 0.664 8.703 32.2617 3.17 137.9 36 82.0 8.5700 0.595 8.701 32.2705 3.17 138.1 16