*2014/04/24 14:15:45.93 *IOS HEADER VERSION 1.10 2011/10/26 2011/10/26 *FILE START TIME : UTC 2013/07/12 18:12:11.000 TIME INCREMENT : 0 0 0 0.416667E-01 0 ! (day hr min sec ms) NUMBER OF RECORDS : 104 DATA DESCRIPTION : CTD FILE TYPE : ASCII CRC : 2DB0C796 NUMBER OF CHANNELS : 8 $TABLE: CHANNELS ! No Name Units Minimum Maximum !--- -------------------------- --------------- -------------- -------------- 1 Pressure decibar 3 106 2 Temperature:Primary 'deg C (ITS90)' 6.7249 10.4467 3 Fluorescence:URU:Wetlabs mg/m^3 0.271 2.264 4 pH:SBE:Nominal n/a 8.589 8.847 5 Salinity:T0:C0 PSS-78 31.2172 33.6952 6 Oxygen:Dissolved:SBE mL/L 1.798 4.916 7 Oxygen:Dissolved:SBE umol/kg 78.20114 214.336 8 Number_of_bin_records n/a 18 31 $END $TABLE: CHANNEL DETAIL ! No Pad Start Width Format Type Decimal_Places !--- ---- ----- ----- ------ ---- -------------- 1 -99 ' ' 7 F ' ' 1 2 -99 ' ' 9 F ' ' 4 3 -99 ' ' 8 F ' ' 3 4 -99 ' ' 8 F ' ' 3 5 -99 ' ' 9 F ' ' 4 6 -99 ' ' 7 F ' ' 2 7 -99 ' ' 6 F ' ' 1 8 ' ' ' ' 5 I I 0 $END $REMARKS This file converted from Sea-Bird file: P:\Cruise_Data_Processing\2013-43\Pro $END *ADMINISTRATION MISSION : 2013-43 AGENCY : 'PBS, Marine Ecosystems and Aquaculture Division,' CONTINUED : ' Nanaimo, B.C.' COUNTRY : Canada PROJECT : Salmon Marine Interactions SCIENTIST : Neville C. PLATFORM : W.E. Ricker *LOCATION GEOGRAPHIC AREA : Strait of Georgia STATION : JF03 EVENT NUMBER : 172 LATITUDE : 48 23.26000 N ! (deg min) LONGITUDE : 124 5.08000 W ! (deg min) WATER DEPTH : 110 *INSTRUMENT TYPE : Sea-Bird CTD MODEL : SBE-911plus SERIAL NUMBER : 506 $TABLE: SENSORS ! Name Abs Depth Serial No ! --------------------------------- -------------- ---------- Temperature ' ' 2106 Conductivity ' ' 1764 'Pressure:Digiquartz with TC' ' ' 0506 Temperature:2 ' ' 2663 Conductivity:2 ' ' 2424 'Oxygen:SBE 43' ' ' 1438 'Fluorometer:WET Labs ECO-AFL/FL' ' ' 2215 pH ' ' 0851 $END $REMARKS SOFTWARE VERSION SEASAVE V 7.22.4 $END *HISTORY $TABLE: PROGRAMS ! Name Vers Date Time Recs In Recs Out ! -------- ------ ---------- -------- --------- --------- SBE_IOS 3.3 2014/04/16 10:49:11 6797 6797 CLEAN 5.1 2014/04/16 10:54:31 6797 6797 MERGEHDR 1.2 2014/04/16 14:30:38 6797 6797 SHIFTDAT 3.4 2014/04/16 16:43:51 6797 6797 SHIFTDAT 3.4 2014/04/16 17:27:54 6797 6797 SHIFTDAT 3.4 2014/04/17 09:41:31 6797 6797 DELETE 6.3 2014/04/17 10:06:59 6797 2551 CTDEDIT 5.0.4 2014/04/21 15:32:28 2551 2498 CALIB 11.8 2014/04/23 16:40:43 2498 2498 FILTERS 4.3 2014/04/23 17:27:45 2498 2498 BINAVE 4.1.1 2014/04/23 17:28:54 2498 104 REMOVECH 8.2 2014/04/23 17:30:24 104 104 CHGUNITS 3.1 2014/04/23 17:44:48 104 104 REORDER 1.3 2014/04/23 17:45:02 ? ? HDREDIT2 2.6 2014/04/24 14:15:45 ? ? $END $REMARKS -CLEAN functions: 2014/04/16 10:52:53 20 Interpolation by Record Number, in Pressure Set event to last 4 characters of file name -The following SHIFT parameters were used. Shift Channel: Fluorescence:URU:Wetlabs:ECO-AFL # of Records to Advance (-ve for Delay): At REC# 0 Shift= 12.00 -The following SHIFT parameters were used. Shift Channel: Conductivity:Primary # of Records to Advance (-ve for Delay): At REC# 0 Shift= -0.60 Salinity was recalculated after shift -The following SHIFT parameters were used. Shift Channel: Conductivity:Secondary # of Records to Advance (-ve for Delay): At REC# 0 Shift= -1.30 Salinity was recalculated after shift -The following DELETE parameters were used: Surface Record Removal: Last Press Min Maximum Surface Pressure (relative): 10.00 Surface Swell Pressure Tolerance: 1.00 Pressure filtered over width: 15 Swells deleted. Warning message if pressure difference of 2.00 Drop rates < 0.30m/s (calculated over 11 points) will be deleted. Drop rate applies in the range 10.00 to 96.76 dbars Sample interval (from FILE section of header) = 0.042 seconds. -CTDEDIT v5.0.4 2014/04/21 15:32:28 53 records were deleted in this editing session. 38 changes in channel Salinity:T0:C0 -CALIB parameters: 2014/04/23 16:40:43 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = P:\Cruise_Data_Processing\2013-43\Processing\doc\2013-43-recal1.CCF Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 13 Oxygen:Dissolved:SBE mL/L 10 0.4180000E-01 0.1070600E+01 -The following FILTER parameters were used. Median filter was used. Filter width = 11 The following channel(s) were filtered. Fluorescence:URU:Wetlabs:ECO-AFL -The following BINAVE parameters were used: Bin channel = Pressure Averaging interval = 1.00 Minimum bin value = 0.000 Bin value was used Interpolated values were NOT used for empty bins Channel 'NUMBER_OF_BIN_RECORDS' was added to file. -REMOVECH 2014/04/23 17:30:24 The following CHANNEL(S) were removed: Scan_Number Temperature:Secondary [deg C (ITS90)] Conductivity:Primary [S/m] Conductivity:Secondary [S/m] Oxygen:Voltage:SBE [volts] Status:Pump Salinity:T1:C1 [PSS-78] Descent_Rate [m/s] Flag -CHANGE units: Temperature reference channel: Temperature* Salinity reference channel: Salinity:* 'Oxygen:Dissolved:SBE [mL/L]' changed from mL/L to umol/kg -HEADER EDITS: 2014/04/24 14:15:45 Applied edit header: P:\Cruise_Data_Processing\2013-43\Processing\doc\2013-43-HDR.TXT Channel 1: Pressure [decibar] Format: F10.3 ==> F7.1 Channel 6: Oxygen:Dissolved:SBE [mL/L] Format: F8.3 ==> F7.2 Channel 4: pH:SBE:Nominal [n/a] Name: pH:SBE ==> pH:SBE:Nominal Units: pH Units ==> n/a Channel 3: Fluorescence:URU:Wetlabs [mg/m^3] Name: Fluorescence:URU:Wetlabs:ECO-AFL ==> Fluorescence:URU:Wetlabs $END *COMMENTS SBE HEADER Sea-Bird SBE 9 Data File: FileName = C:\Data\2013-43\2013-43-0172.hex Software Version Seasave V 7.22.4 Temperature SN = 2106 Conductivity SN = 1764 Number of Bytes Per Scan = 30 Number of Voltage Words = 4 Number of Scans Averaged by the Deck Unit = 1 System UpLoad Time = Jul 12 2013 11:12:11 SBE 11plus V 5.1e number of scans to average = 1 pressure baud rate = 9600 NMEA baud rate = 4800 GPIB address = 1 advance primary conductivity 0.073 seconds advance secondary conductivity 0.073 seconds S> Ricker 2013-43 Station: JF03 Depth(m): 112m System UTC = Jul 12 2013 18:12:11 # nquan = 15 # nvalues = 6797 # units = specified # name 0 = scan: Scan Count # name 1 = prDM: Pressure, Digiquartz [db] # name 2 = t090C: Temperature [ITS-90, deg C] # name 3 = t190C: Temperature, 2 [ITS-90, deg C] # name 4 = c0S/m: Conductivity [S/m] # name 5 = c1S/m: Conductivity, 2 [S/m] # name 6 = flECO-AFL: Fluorescence, WET Labs ECO-AFL/FL [mg/m^3] # name 7 = sbeox0V: Oxygen raw, SBE 43 [V] # name 8 = ph: pH # name 9 = pumps: Pump Status # name 10 = sal00: Salinity, Practical [PSU] # name 11 = sal11: Salinity, Practical, 2 [PSU] # name 12 = sbeox0ML/L: Oxygen, SBE 43 [ml/l], WS = 1 # name 13 = dz/dtM: Descent Rate [m/s], WS = 1 # name 14 = flag: flag # span 0 = 1, 6797 # span 1 = 2.045, 106.760 # span 2 = 6.7132, 10.4576 # span 3 = 6.6283, 10.3686 # span 4 = 3.389679, 3.476138 # span 5 = 3.389990, 3.476339 # span 6 = 0.1901, 3.8568 # span 7 = 1.0351, 2.1075 # span 8 = 8.574, 8.855 # span 9 = 0, 1 # span 10 = 31.2112, 33.7045 # span 11 = 31.2883, 33.7905 # span 12 = 1.61991, 4.58894 # span 13 = -1.198, 1.251 # span 14 = 0.0000e+00, 0.0000e+00 # interval = seconds: 0.0416667 # start_time = Jul 12 2013 18:12:11 [System UTC, header] # bad_flag = -9.990e-29 # # # # # 2106 # 01-Apr-11 # 1 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.000 # 4.14706003e-003 # 6.31100076e-004 # 2.13431760e-005 # 2.18854475e-006 # 1000.000 # 1.00000000 # 0.0000 # # # # # # 1764 # 29-Mar-11 # 1 # # 0.0000 # 2000.0000 # 0 # # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.0 # -9.57000000e-008 # # # -4.15464915e+000 # 4.87579437e-001 # -6.56660246e-004 # 5.55755549e-005 # -9.57000000e-008 # 3.2500e-006 # # 0.00000000e+000 # # 1.00000000 # 0.00000 # # # # # # 0506 # 15-Apr-11 # -4.957807e+004 # -1.280011e+000 # 1.485710e-002 # 4.021200e-002 # 0.000000e+000 # 3.037224e+001 # -6.696188e-004 # 3.897170e-006 # 3.287590e-009 # 0.99998000 # -1.50650 # 0.000000e+000 # 1.280810e-002 # -9.210198e+000 # # # # # # 2663 # 01-Apr-11 # 1 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.000 # 4.37922733e-003 # 6.52156445e-004 # 2.50583016e-005 # 2.45150025e-006 # 1000.000 # 1.00000000 # 0.0000 # # # # # # 2424 # 29-Mar-11 # 1 # # 0.0000 # 2000.0000 # 0 # # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.0 # -9.57000000e-008 # # # -1.00422903e+001 # 1.46672240e+000 # 9.13089396e-004 # 5.03120339e-005 # -9.57000000e-008 # 3.2500e-006 # # 0.00000000e+000 # # 1.00000000 # 0.00000 # # # # # # # # # # # # 1438 # 02-Apr-11p # 1 # # # 0.0000 # 0.0000e+000 # 0.0000 # 0.00e+000 # 0.0000 # 0.0 # # # # 4.5380e-001 # -0.5130 # -1.7303e-003 # 7.3264e-005 # -1.4010e-006 # 2.5826e+000 # 1.92630e-004 # -4.64800e-002 # 3.6000e-002 # 1.3800 #

-3.3000e-002

#

5.0000e+003

#

1.4500e+003

# # # # # # # 2215 # June-19-2013 # 1.30000000e+001 # # 0.0159 # # # # # # 0851 # 29-May-12 # 4.5412 # 2.4967 # # # # # # # # # # # # # datcnv_date = Apr 16 2014 09:07:40, 7.22.5 [datcnv_vars = 10] # datcnv_in = P:\Cruise_Data_Processing\2013-43\RAW\CTD\2013-43_Leg3_12-20JUL\20 13-43-0172.hex P:\Cruise_Data_Processing\2013-43\Processing\doc\2013-43-ctd-post.xmlcon # datcnv_skipover = 0 # datcnv_ox_hysteresis_correction = yes # wildedit_date = Apr 16 2014 09:10:44, 7.22.5 # wildedit_in = P:\Cruise_Data_Processing\2013-43\Processing\convert\2013-43-017 2.cnv # wildedit_pass1_nstd = 2.0 # wildedit_pass2_nstd = 5.0 # wildedit_pass2_mindelta = 0.000e+000 # wildedit_npoint = 50 # wildedit_vars = prDM t090C t190C c0S/m c1S/m # wildedit_excl_bad_scans = yes # alignctd_date = Apr 16 2014 10:02:21, 7.22.5 # alignctd_in = P:\Cruise_Data_Processing\2013-43\Processing\wildedit\2013-43-01 72.cnv # alignctd_adv = sbeox0V 4.500 # celltm_date = Apr 16 2014 10:42:37, 7.22.5 # celltm_in = P:\Cruise_Data_Processing\2013-43\Processing\align\2013-43-0172.cn v # celltm_alpha = 0.0300, 0.0300 # celltm_tau = 7.0000, 7.0000 # celltm_temp_sensor_use_for_cond = primary, secondary # Derive_date = Apr 16 2014 10:43:57, 7.22.5 [derive_vars = 4] # Derive_in = P:\Cruise_Data_Processing\2013-43\Processing\celltm\2013-43-0172.c nv P:\Cruise_Data_Processing\2013-43\Processing\doc\2013-43-ctd-post.xmlcon # derive_time_window_docdt = seconds: 1 # derive_ox_tau_correction = yes # derive_time_window_dzdt = seconds: 1 # file_type = ascii END* Remarks from CTDEDIT: CTDEDIT was used to remove some records near the top and bottom of the cast; salinity was cleaned lightly. Data Processing Notes: ---------------------- Fluorescence data are nominal and unedited except that some records were removed in editing temperature and salinity. The salinity calibration samples were lost. There are large differences between the 2 salinity and temperature channels. Post-cruise conductivity sensor calibrations showed no significant drift in those sensors, but there was no post-cruise information available for the temperature sensors at the time of initial processing. The secondary temperature sensor malfunctioned during an earlier cruise, so the primary temperature and salinity were selected for archiving. Salinity was not recalibrated, but recalibration will be applied later if the factory report on the primary temperature sensor indicates it is necessary. There was no calibration sampling for dissolved oxygen, but the results of a comparison with titrated samples during cruise 2013-16 was used to recalibrate the Dissolve Oxygen concentration. WARNING: The pH:SBE:Nominal data should be used with caution; no field calibration data were available at the time of processing. Calibration is required for each cast to get absolute values, although general trends within a cast are likely real. For details on the processing see processing report: 2013-43-proc.doc. *CALIBRATION $TABLE: CORRECTED CHANNELS ! Name Units Fmla Pad Coefficients ! ---------------------- ------ ---- ------ ------------ Oxygen:Dissolved:SBE mL/L 10 -99 () (0.418E-01 1.0706) $END !--1--- ---2---- ---3--- ---4--- ---5---- --6--- --7-- -8-- !Pressu Temperat Fluores pH:SBE: Salinity Oxygen Oxyge Numb !re ure: cence: Nominal :T0:C0 : n: er_o ! Primary URU: Dissol Disso ~bin ! Wetlabs ved: lved: _rec ! SBE SBE ords !------ -------- ------- ------- -------- ------ ----- ---- *END OF HEADER 3.0 10.4467 1.726 8.846 31.2172 4.92 214.3 18 4.0 10.4305 1.976 8.846 31.2191 4.88 213.0 30 5.0 10.4125 2.146 8.846 31.2208 4.79 208.9 31 6.0 10.3801 2.264 8.847 31.2275 4.75 206.9 29 7.0 10.2238 2.234 8.847 31.2995 4.75 207.1 25 8.0 10.2038 2.254 8.842 31.3086 4.72 206.0 26 9.0 10.2055 2.241 8.836 31.3069 4.68 203.9 25 10.0 10.1718 2.188 8.834 31.3258 4.62 201.4 24 11.0 10.1524 2.193 8.831 31.3392 4.59 200.3 26 12.0 10.0946 1.862 8.828 31.3826 4.59 200.1 25 13.0 10.0659 1.891 8.823 31.4086 4.58 199.9 23 14.0 10.0632 1.773 8.817 31.4100 4.58 199.6 20 15.0 10.0614 1.815 8.814 31.4108 4.56 198.7 24 16.0 10.0610 1.786 8.814 31.4125 4.52 197.0 26 17.0 10.0548 1.754 8.813 31.4186 4.46 194.3 27 18.0 10.0323 1.746 8.813 31.4328 4.38 191.1 25 19.0 9.9760 1.682 8.810 31.4391 4.32 188.1 24 20.0 9.9240 1.614 8.808 31.4462 4.26 185.6 24 21.0 9.8532 1.576 8.803 31.4520 4.25 185.2 23 22.0 9.7848 1.485 8.799 31.4664 4.25 185.0 20 23.0 9.7560 1.449 8.794 31.4717 4.23 184.2 24 24.0 9.7529 1.405 8.790 31.4722 4.19 182.8 27 25.0 9.7403 1.379 8.788 31.4786 4.17 181.6 26 26.0 9.7085 1.297 8.787 31.4826 4.14 180.7 21 27.0 9.6958 1.299 8.783 31.4849 4.09 178.5 23 28.0 9.6869 1.312 8.783 31.4880 4.04 176.0 23 29.0 9.6555 1.247 8.781 31.5017 3.98 173.6 26 30.0 9.5889 1.217 8.780 31.5354 3.94 171.9 26 31.0 9.5186 1.148 8.777 31.5786 3.91 170.4 24 32.0 9.4532 1.105 8.772 31.6205 3.88 169.3 24 33.0 9.4230 1.183 8.769 31.6393 3.86 168.1 26 34.0 9.3849 1.104 8.766 31.6627 3.83 167.1 26 35.0 9.3482 1.047 8.764 31.6870 3.81 166.2 24 36.0 9.3182 1.071 8.762 31.7073 3.79 165.2 23 37.0 9.3086 1.058 8.761 31.7138 3.78 164.6 22 38.0 9.2721 1.030 8.759 31.7379 3.77 164.4 26 39.0 9.2568 1.031 8.757 31.7476 3.76 163.7 27 40.0 9.2541 1.017 8.754 31.7494 3.73 162.5 25 41.0 9.2486 1.001 8.753 31.7531 3.70 161.3 24 42.0 9.2341 1.060 8.753 31.7623 3.64 158.7 25 43.0 9.2129 0.989 8.751 31.7748 3.58 155.9 24 44.0 9.1704 0.932 8.750 31.8006 3.54 154.5 23 45.0 9.0955 0.830 8.749 31.8490 3.54 154.4 24 46.0 9.0263 0.854 8.747 31.8997 3.54 154.4 22 47.0 9.0181 0.875 8.743 31.9063 3.52 153.5 25 48.0 9.0084 0.875 8.739 31.9154 3.45 150.5 26 49.0 8.9936 0.865 8.736 31.9274 3.34 145.5 25 50.0 8.9342 0.889 8.735 31.9744 3.23 140.5 22 51.0 8.8098 0.707 8.735 32.0592 3.13 136.3 25 52.0 8.6443 0.697 8.732 32.1821 3.05 132.8 23 53.0 8.5472 0.647 8.729 32.2586 3.00 130.8 20 54.0 8.4064 0.617 8.723 32.3652 2.99 130.3 21 55.0 8.3021 0.580 8.715 32.4463 2.99 130.1 25 56.0 8.2819 0.587 8.707 32.4611 2.98 129.8 25 57.0 8.2810 0.592 8.700 32.4623 2.99 130.1 27 58.0 8.2778 0.588 8.694 32.4664 2.98 129.8 23 59.0 8.2778 0.605 8.690 32.4675 2.98 129.7 21 60.0 8.2776 0.623 8.688 32.4689 2.98 129.5 23 61.0 8.2764 0.582 8.687 32.4710 2.97 129.2 24 62.0 8.2693 0.611 8.686 32.4771 2.97 129.3 23 63.0 8.2650 0.602 8.686 32.4805 2.96 128.9 26 64.0 8.2690 0.574 8.686 32.4774 2.96 128.8 24 65.0 8.2656 0.578 8.685 32.4803 2.95 128.3 21 66.0 8.2599 0.567 8.685 32.4854 2.95 128.4 23 67.0 8.2513 0.590 8.685 32.4921 2.93 127.6 23 68.0 8.2506 0.589 8.684 32.4929 2.90 126.4 24 69.0 8.2426 0.630 8.683 32.5012 2.85 123.9 21 70.0 8.2134 0.640 8.683 32.5263 2.76 120.2 24 71.0 8.1519 0.596 8.683 32.5756 2.69 117.0 21 72.0 8.0541 0.544 8.683 32.6491 2.64 115.1 26 73.0 7.9199 0.509 8.682 32.7533 2.61 113.5 23 74.0 7.8279 0.474 8.678 32.8205 2.53 110.2 23 75.0 7.8137 0.445 8.675 32.8286 2.42 105.5 23 76.0 7.7776 0.405 8.669 32.8556 2.34 101.9 22 77.0 7.5719 0.363 8.665 33.0182 2.30 100.1 21 78.0 7.4237 0.352 8.662 33.1342 2.27 99.0 25 79.0 7.3265 0.316 8.652 33.2101 2.25 98.1 27 80.0 7.2873 0.301 8.646 33.2412 2.24 97.3 23 81.0 7.2634 0.312 8.641 33.2607 2.21 96.3 23 82.0 7.2420 0.284 8.637 33.2789 2.20 95.7 23 83.0 7.2257 0.307 8.632 33.2919 2.18 94.9 21 84.0 7.1982 0.300 8.629 33.3142 2.16 94.2 24 85.0 7.1785 0.282 8.627 33.3299 2.14 93.2 22 86.0 7.1643 0.309 8.624 33.3414 2.11 92.0 22 87.0 7.1374 0.306 8.624 33.3637 2.08 90.7 23 88.0 7.1036 0.289 8.621 33.3911 2.05 89.0 23 89.0 7.0814 0.279 8.620 33.4089 2.00 87.0 24 90.0 7.0145 0.292 8.618 33.4623 1.95 84.8 23 91.0 6.9726 0.271 8.615 33.4962 1.90 82.7 22 92.0 6.9299 0.282 8.613 33.5303 1.87 81.5 22 93.0 6.8347 0.324 8.611 33.6068 1.85 80.6 22 94.0 6.7992 0.340 8.608 33.6348 1.84 79.9 20 95.0 6.7755 0.339 8.603 33.6537 1.83 79.8 22 96.0 6.7598 0.360 8.601 33.6663 1.83 79.7 24 97.0 6.7482 0.367 8.598 33.6754 1.83 79.5 26 98.0 6.7500 0.334 8.597 33.6744 1.82 79.2 25 99.0 6.7397 0.369 8.595 33.6826 1.81 78.9 23 100.0 6.7380 0.391 8.594 33.6842 1.81 78.9 21 101.0 6.7371 0.393 8.594 33.6853 1.82 79.0 22 102.0 6.7280 0.411 8.592 33.6922 1.81 78.6 22 103.0 6.7305 0.431 8.592 33.6904 1.81 78.6 23 104.0 6.7326 0.402 8.590 33.6892 1.80 78.4 24 105.0 6.7310 0.403 8.589 33.6905 1.80 78.3 26 106.0 6.7249 0.440 8.589 33.6952 1.80 78.2 24