*2017/01/19 12:06:18.87 *IOS HEADER VERSION 2.0 2016/04/28 2016/06/13 IVF16 *FILE START TIME : UTC 2013/06/12 22:07:51.000 TIME INCREMENT : 0 0 0 0.416667E-01 0 ! (day hr min sec ms) NUMBER OF RECORDS : 24 DATA DESCRIPTION : Bottle:Rosette:Up:Stop + CTD:Up FILE TYPE : ASCII CRC : C83F9612 NUMBER OF CHANNELS : 23 $TABLE: CHANNELS ! No Name Units Minimum Maximum !--- --------------------------- --------------- -------------- -------------- 1 Bottle:Firing_Sequence n/a 1 24 2 Bottle_Number n/a 1 24 3 Pressure decibar 5.122 3687.682 4 Temperature:Primary 'deg C (ITS90)' 1.5737 10.1141 5 Transmissivity %/metre 52.5 65.7 6 Fluorescence:URU:Seapoint mg/m^3 0.726 2.24 7 Salinity:T0:C0 PSS-78 32.3876 34.6675 8 Oxygen:Dissolved:SBE mL/L 0.264 6.856 9 Oxygen:Dissolved:SBE umol/kg 11.5 298.6 10 Number_of_bin_records n/a 65 121 11 Sample_Number n/a 332 355 12 Temperature:Draw 'deg C (ITS90)' 2.2 10 13 Salinity:Bottle PSS-78 32.3918 34.6655 14 Flag:Salinity:Bottle n/a 15 Oxygen:Dissolved mL/L 0.264 6.842 16 Oxygen:Dissolved umol/kg 11.47258 297.9571 17 Flag:Oxygen:Dissolved n/a 18 Nitrate_plus_Nitrite umol/L 7.4 46.1 19 Flag:Nitrate_plus_Nitrite n/a 20 Silicate umol/L 13.3 177 21 Flag:Silicate n/a 22 Phosphate umol/L 0.96 3.26 23 Flag:Phosphate n/a $END $TABLE: CHANNEL DETAIL ! No Pad Start Width Format Type Decimal_Places !--- ---- ----- ----- ------ ---- -------------- 1 -99 ' ' 3 I I 0 2 -99 ' ' 3 I I 0 3 -99 ' ' 7 F ' ' 1 4 -99 ' ' 9 F ' ' 4 5 -99 ' ' 6 F ' ' 1 6 -99 ' ' 8 F ' ' 3 7 -99 ' ' 9 F ' ' 4 8 -99 ' ' 7 F ' ' 2 9 -99 ' ' 6 F ' ' 1 10 ' ' ' ' 5 I I 0 11 -99 ' ' 5 I I 0 12 -99 ' ' 5 F R4 1 13 -99 ' ' 9 F R4 4 14 0 ' ' 3 NQ C ' ' 15 -99 ' ' 8 F R4 3 16 -99 ' ' 6 F ' ' 1 17 0 ' ' 3 NQ C ' ' 18 -99 ' ' 6 F R4 1 19 0 ' ' 3 NQ C ' ' 20 -99 ' ' 6 F R4 1 21 0 ' ' 3 NQ C ' ' 22 -99 ' ' 7 F R4 2 23 0 ' ' 3 NQ C ' ' $END $REMARKS Flag channels initialized with zeros. Non-zero values have the following significance: -------------------------------------------------------------------------------------- 1 = Sample for this measurement was collected but not analyzed. Sample lost. 2 = Acceptable Measurement 3 = Questionable Measurement (Probably Good) 4 = Poor Measurement (Probably Bad) 5 = Measurement Not Reported (Bad) 6 = Mean of replicate measurements 7 = Manual chromatographic peak measurement 8 = Irregular digital chromatographic peak integration 9 = Sample was planned for this measurement from this bottle but was not collected -------------------------------------------------------------------------------------- $END *ADMINISTRATION MISSION : 2013-17 AGENCY : IOS, Ocean Sciences Division, Sidney, B.C. COUNTRY : Canada PROJECT : Line P SCIENTIST : Robert M. PLATFORM : John P. Tully *LOCATION GEOGRAPHIC AREA : North-East Pacific STATION : P16 EVENT NUMBER : 49 LATITUDE : 49 17.00000 N ! (deg min) LONGITUDE : 134 39.95000 W ! (deg min) WATER DEPTH : 3633 ALTIMETER (M) : 8.18 ! custom item $REMARKS Altimeter value is distance from bottom and is calculated as the median of the deepest 2 metres of data. $END *INSTRUMENT TYPE : Sea-Bird CTD MODEL : SBE-911plus SERIAL NUMBER : 0443 LOCATION : Mid-ship ! custom item $TABLE: SENSORS ! Name Abs Depth Serial No ! ----------------------------------- -------------- ---------- Temperature ' ' 2023 Conductivity ' ' 2280 'Pressure:Digiquartz with TC' ' ' 0443 Temperature:2 ' ' 2668 Conductivity:2 ' ' 2754 Fluorometer:Seapoint ' ' 2228 'Oxygen:SBE 43' ' ' 0997 'Transmissometer:WET Labs C-Star' ' ' 1396 Altimeter ' ' 1204 PAR/Irradiance:Biospherical/Licor ' ' 4601 $END $REMARKS SOFTWARE VERSION SEASAVE V 7.22.4 $END *HISTORY $TABLE: PROGRAMS ! Name Vers Date Time Recs In Recs Out ! ------------ ------ ---------- -------- --------- --------- SBE_IOS 3.2 2013/08/30 14:30:11 2848 2848 CLEAN 5.1 2013/08/30 14:30:48 2848 2848 ADDSAMP 3.5 2013/11/07 15:38:53 2848 2848 BINAVE 4.1.1 2013/12/10 08:54:59 2848 24 MERGE 3.5 2013/12/10 08:55:28 24 24 CLEAN 5.1 2013/12/10 08:55:37 24 24 CALIB 11.8 2013/12/10 08:56:24 24 24 SORT 3.6 2013/12/10 08:57:40 24 24 REMOVECH 8.2 2013/12/10 08:58:31 24 24 CHGUNITS 3.1 2013/12/10 09:02:54 24 24 CHGUNITS 3.1 2013/12/10 09:03:21 24 24 REORDER 1.3 2013/12/10 09:03:52 ? ? HDREDIT2 2.6 2013/12/17 14:42:39 ? ? CHANGE_FLAGS 2.0 2014/11/20 09:58:28 24 24 HDREDIT2 3.0.2 2016/07/14 15:09:20 ? ? CLEAN 5.2.1 2017/01/19 12:06:18 24 24 $END $REMARKS -CLEAN functions: 2013/08/30 14:30:34 20 Reset #RECS, MIN & MAX values in header. Set event to last 4 characters of file name -The following ADDSAMP parameters were used: Sample Number Lookup File: P:\Cruise_Data_Processing\2013-17\Processing\HYDRO\addsamp.csv Bottle Channel Name: Bottle_Number -The following BINAVE parameters were used: Bin channel = Bottle_Number Averaging interval = 1.00 Minimum bin value = 0.000 Average value was used Interpolated values were NOT used for empty bins Channel 'NUMBER_OF_BIN_RECORDS' was added to file. -The following MERGE parameters were used: 2013/12/10 08:55:28 Merge Channel: Bottle_Number Merge Scheme Used: Add Secondary to Primary Overlap Scheme Used: Keep Primary Primary Channels to Include: ALL Secondary Channels to Include: Event_Number, Bottle:Position, Salinity:Bottle, Flag:Salinity:Bottle, Chlorophyll:Extracted, Flag:Chlorophyll:Extracted, Phaeo-Pigment:Extracted, Oxygen:Dissolved, Flag:Oxygen:Dissolved, Temperature:Draw, Nitrate_plus_Nitrite, Flag:Nitrate_plus_Nitrite, Silicate, Flag:Silicate, Phosphate, Flag:Phosphate, Ammonium, Flag:Ammonium, pH, Flag:pH, Dimethyl_Sulphide, Flag:Dimethyl_Sulphide Primary file : P:\Cruise_Data_Processing\2013-17\Processing\hydro\2013-17-0049.samavg Secondary file: P:\Cruise_Data_Processing\2013-17\Processing\hydro\2013-17-0049.mrgcln1s -SORT parameters: 2013/12/04 09:00:56 Sorted in ascending order of channel Bottle_Number -CLEAN functions: 2013/12/10 08:55:36 20 Reset #RECS, MIN & MAX values in header. Remove Sea-Bird comments from the header. Remove remark heading: "Comments from secondary" -CALIB parameters: 2013/12/10 08:56:24 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = P:\Cruise_Data_Processing\2013-17\Processing\doc\2013-17-recal1.ccf Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 17 Oxygen:Dissolved:SBE mL/L 10 0.0000000E+00 0.1054000E+01 -SORT parameters: 2013/12/10 08:57:40 Sorted in ascending order of channel Pressure* -REMOVECH 2013/12/10 08:58:31 The following CHANNEL(S) were removed: Scan_Number Temperature:Secondary [deg C (ITS90)] Conductivity:Primary [S/m] Conductivity:Secondary [S/m] Oxygen:Voltage:SBE [volts] PAR [uE/m^2/sec] Altimeter [metres] Descent_Rate [m/s] Status:Pump Salinity:T1:C1 [PSS-78] Flag -CHANGE units: Temperature reference channel: Temperature:Primary Salinity reference channel: Salinity:T0:C0 'Oxygen:Dissolved:SBE' changed from mL/L to umol/kg -CHANGE units: Temperature reference channel: Temperature:Draw Salinity reference channel: Salinity:T0:C0 'Oxygen:Dissolved' changed from mL/L to umol/kg -HEADER EDITS: 2013/12/17 14:42:39 Applied edit header: P:\Cruise_Data_Processing\2013-17\Processing\doc\HYDRO\2013-17-bot-hdr.txt Channel 1: Bottle:Firing_Sequence [n/a] Name: Bottle_Number ==> Bottle:Firing_Sequence Channel 2: Bottle_Number [n/a] Name: Bottle:Position ==> Bottle_Number Channel 3: Pressure [decibar] Units: dbars ==> decibar Format: F10.3 ==> F7.1 Channel 6: Fluorescence:URU:Seapoint [mg/m^3] Name: Fluorescence:Seapoint ==> Fluorescence:URU:Seapoint Channel 8: Oxygen:Dissolved:SBE [mL/L] Format: F8.3 ==> F7.2 Channel 12: Temperature:Draw [deg C (ITS90)] Units: ==> deg C (ITS90) Format: F7.2 ==> F5.1 Channel 13: Salinity:Bottle [PSS-78] Units: ==> PSS-78 Channel 14: Flag:Salinity:Bottle [n/a] Units: ==> n/a Channel 15: Oxygen:Dissolved [mL/L] Units: ==> mL/L Channel 17: Flag:Oxygen:Dissolved [n/a] Units: ==> n/a Channel 18: Nitrate_plus_Nitrite [umol/L] Units: ==> umol/L Channel 19: Flag:Nitrate_plus_Nitrite [n/a] Units: ==> n/a Channel 20: Silicate [umol/L] Units: ==> umol/L Channel 21: Flag:Silicate [n/a] Units: ==> n/a Channel 22: Phosphate [umol/L] Units: ==> umol/L Channel 23: Flag:Phosphate [n/a] Units: ==> n/a -HEADER EDITS: 2016/07/14 15:09:20 Applied edit header: P:\Cruise_Data_Processing\2013-FL\2013-HDR-FL.TXT -CLEAN functions: 2017/01/19 12:06:17 20 Change character data from " " to "0" in channels Flag* $END *COMMENTS Sample_Number 337: OXY: Duplicate value not reported. Value was clearly erroneous due to problems during analysis. See notes. Sample_Number 342: OXY: Bottom cap did not close. Sample_Number 348: OXY: Bubble on lens. Sample_Number 351: OXY: Duplicate value not reported. Value was clearly erroneous due to problems during analysis. See notes. Analysis methods: ----------------- Chlorophyll samples were filtered onto 25mm GF/F filters and stored in glass scintillation vials at -80C prior to analysis. Samples were extracted in 90% acetone at -20C for 24 hours and analyzed on a Turner 10AU fluorometer which is calibrated annually with commercially pure chlorophyll a (Sigma). Fluorescence readings taken before and after acidification were used to calculate chlorophyll and phaeopigment concentrations (Holm-Hansen et al 1965). Chlorophyll samples were analyzed on board ship in June or in July-August at IOS in a controlled temperature lab. A number of samples were analyzed on a different fluorometer (plankton lab) and values seem to be slightly lower than those analyzed on WP fluorometer. These are flagged. The average of two samples is reported. Variability is assessed as the CV% (std dev / mean*100). For details see worksheet “CV%” in file QF2013-17CHL*.xlsx where * with the most recent date is the most recent update. Flags and comments apply to chlorophyll values only. No flags or comments are assigned for Phaeopigment values. Oxygen samples were analyzed at sea on an automated Winkler titration system (Brinkmann Dosimat model 665 for titrations, Dosimat model 865 for dispensing standards and a PC950 Colorimeter controlled by AutoOxy software V3.4) with modifications based on Carpenter (1965) and adhering to WOCE protocols (Culberson 1991). For details including a duplicate analysis, see document QF2013-17OXY*.xls. Salinity samples were collected in 200 mL type ll glass bottles with reusable silicone inserts supplied by Xiamen Cuten Accessories Industry Limited and screw caps supplied by Ocean Scientific International Limited. They were analyzed in a temperature-controlled lab on a Guildline 8400B Salinometer (S/N 68572) standardized with IAPSO standard seawater 22 to 40 days after collection. Full details including a duplicate analysis are in file QF2013-17SAL*.xls. Nutrient samples were collected in plastic tubes and quick frozen in aluminum blocks stored in -20 freezer. One set of samples was collected and frozen immediately. Another set of samples from 400m and deeper (to be used for silicate analysis) was collected and stored at 4C in the dark. All samples were returned to IOS for analysis. They were analyzed using an Astoria analyzer following methods described in Barwell-Clarke and Whitney (1996). For raw data, precision and duplicate details see file QF2013-17nuts*.xls. References: 1. Barwell-Clarke, J. and Whitney, F. 1996. Institute of Ocean Sciences Nutrient Methods and Analysis. Canadian Technical Report of Hydrography and Ocean Sciences, No. 182, 43 pp. 2. Carpenter, J.H. 1965. The Chesapeake Bay Institute Technique for the Winkler Dissolved Oxygen Method. Limmnol. & Oceanogr., 10: 141-143. 3. Culberson, C.H. 1991. Dissolved oxygen. WOCE Hydrographic Programme Operations and Methods (July 1991). 15pp. 4. Holm-Hansen, O., Lorenzen, C.J., Holmes, R.W., and Strickland J.D.H. 1965. Fluorometric Determination of Chlorophyll. J.du Cons. Intl. Pour l’Epl. De la Mer. 30:3-15. * For PDF versions of these papers see folder \\Cruise_Data\DOCUMENTS\Analysis Reference Papers --------------------------------------------------------------------------------- Data Processing Notes: ---------------------- Transmissivity, Fluorescence and PAR data are nominal and unedited except that some records were removed in editing temperature and salinity. For details on how the transmissivity calibration parameters were calculated see the document in folder "\cruise_data\documents\transmissivity". The CTD salinity was lower than bottle salinity by an average of ~0.0017. The Dissolved:Oxygen:SBE data are considered of lower quality than usual which is likely due to noisy secondary temperature and/or problems in the secondary plumbing. Problems were less severe during bottle stops except for casts #18, 19 and 22 from which the SBE DO channel was removed. For details on the processing see the report: 2013-17-proc.doc. --------------------------------------------------------------------------------- WARNING: SeaPoint Fluorometer #2228 malfunctioned during the latter half of 2013. There were large values at great depth that got steadily higher through the year until it was removed from service. The data have been left in the file so researchers can see the shape of the profile. Comparison with extracted chlorophyll is recommended. *CALIBRATION $TABLE: CORRECTED CHANNELS ! Name Units Fmla Pad Coefficients ! ---------------------- ------ ---- ------ ------------ Oxygen:Dissolved:SBE mL/L 10 -99 () (0 1.054) $END !1- 2- --3--- ---4---- --5-- ---6--- ---7---- --8--- --9-- -10- -11- -12- ---13--- 14 ---15-- --16- 17 --18- 19 --20- 21 --22-- 23 !Bo Bo Pressu Temperat Trans Fluores Salinity Oxygen Oxyge Numb Samp Temp Salinity Fl Oxygen: Oxyge Fl Nitra Fl Silic Fl Phosph Fl !tt tt re ure: missi cence: :T0:C0 : n: er_o le_ erat :Bottle ag Dissolv n: ag te_ ag ate ag ate ag !~u ~u Primary vity URU: Dissol Disso ~bin Numb ure: ~o ed Disso ~o plus_ ~t ~i ~p !en mb Seapoin ved: lved: _rec er Draw tt lved lv Nitri ri ca ha !ce er t SBE SBE ords le ed te te te te !-- -- ------ -------- ----- ------- -------- ------ ----- ---- ---- ---- -------- -- ------- ----- -- ----- -- ----- -- ------ -- *END OF HEADER 24 24 5.1 10.1128 52.5 1.867 32.3880 6.69 291.4 121 355 10.0 32.3918 0 6.693 291.5 0 7.4 0 13.4 0 0.96 0 23 23 10.5 10.1141 52.7 2.109 32.3880 6.70 291.9 121 354 10.0 -99.0000 0 6.682 291.1 0 7.4 0 13.3 0 0.97 0 22 22 25.3 10.0890 52.8 2.240 32.3876 6.69 291.5 121 353 9.9 -99.0000 0 6.682 291.0 0 7.4 0 13.3 0 0.96 0 21 21 49.3 8.5008 58.4 1.836 32.4085 6.86 298.6 121 352 8.7 -99.0000 0 6.842 298.0 0 8.6 6 14.4 6 1.06 6 20 20 74.9 7.0883 63.6 0.945 32.4981 6.71 292.0 121 351 7.5 -99.0000 0 6.714 292.3 2 12.3 0 17.0 0 1.23 0 19 19 99.9 6.8004 64.2 0.860 32.6530 6.22 270.8 121 350 7.3 -99.0000 0 6.208 270.2 0 15.7 0 21.5 0 1.41 0 18 18 125.8 6.6507 64.5 0.846 32.9503 5.43 236.1 121 349 7.2 -99.0000 0 5.411 235.5 0 19.9 0 27.9 0 1.64 0 17 17 150.0 6.4188 64.6 0.842 33.4673 4.29 186.7 121 348 6.9 -99.0000 0 4.304 187.2 3 25.6 0 37.1 0 1.92 0 16 16 175.1 6.4833 64.5 0.838 33.7393 3.43 149.2 121 347 7.0 -99.0000 0 3.441 149.7 6 29.3 0 43.9 0 2.12 0 15 15 200.9 6.2340 64.6 0.839 33.8545 2.97 129.1 121 346 6.7 -99.0000 0 2.964 128.9 0 32.0 0 50.6 0 2.28 0 14 14 249.8 5.5567 64.6 0.850 33.8897 2.42 105.3 121 345 6.3 -99.0000 0 2.433 105.8 0 35.3 0 60.7 0 2.50 0 13 13 299.9 5.2310 64.9 0.849 33.8957 2.20 95.8 121 344 6.0 -99.0000 0 2.209 96.1 6 37.0 0 65.9 0 2.61 0 12 12 401.2 4.5510 65.2 0.858 33.9772 1.42 61.6 121 343 5.5 -99.0000 0 1.434 62.3 0 40.8 0 82.7 0 2.87 0 11 11 601.3 3.9456 65.5 0.857 34.1314 0.70 30.5 121 342-99.0 -99.0000 9 -99.000 -99.0 9 -99.0 9 -99.0 9 -99.00 9 10 10 799.8 3.4846 65.4 0.857 34.2595 0.36 15.8 121 341 4.3 -99.0000 0 0.369 16.0 0 45.3 0 125.4 0 3.22 0 9 9 1000.4 3.1117 65.4 0.855 34.3561 0.26 11.5 121 340 3.8 34.3563 6 0.264 11.5 0 45.9 0 139.4 0 3.26 0 8 8 1250.5 2.7386 65.5 0.856 34.4352 0.29 12.8 121 339 3.5 34.4372 0 0.288 12.5 0 46.1 0 152.5 0 3.26 0 7 7 1499.6 2.3996 65.5 0.839 34.4986 0.52 22.6 121 338 3.1 34.5004 0 0.537 23.3 0 45.7 6 162.6 6 3.21 6 6 6 1999.2 1.9547 65.7 0.808 34.5866 1.30 56.6 121 337 2.6 34.5873 6 1.293 56.2 2 43.5 0 172.8 0 3.05 0 5 5 2500.1 1.7489 65.7 0.784 34.6270 1.88 81.8 121 336 2.4 34.6291 0 1.869 81.2 0 42.0 0 174.8 0 2.93 0 4 4 3000.1 1.6172 65.7 0.747 34.6511 2.39 103.9 121 335 2.2 34.6526 6 2.373 103.1 0 40.6 0 174.7 0 2.82 0 2 2 3498.4 1.5742 65.4 0.726 34.6644 2.69 117.0 65 333 2.2 -99.0000 0 2.673 116.1 0 39.7 0 176.1 0 2.76 0 3 3 3500.0 1.5744 65.5 0.726 34.6645 2.69 116.9 121 334 2.4 34.6655 0 2.685 116.6 0 39.7 0 176.0 0 2.75 0 1 1 3687.7 1.5737 64.6 0.738 34.6675 2.76 119.9 121 332 2.3 -99.0000 0 2.741 119.1 0 39.8 0 177.0 0 2.75 0