*2013/08/27 11:45:03.47 *IOS HEADER VERSION 1.10 2011/10/26 2011/10/26 *FILE START TIME : UTC 2013/04/04 17:03:35.000 TIME INCREMENT : 0 0 0 0.416667E-01 0 ! (day hr min sec ms) NUMBER OF RECORDS : 50 DATA DESCRIPTION : CTD FILE TYPE : ASCII CRC : CF80C37D NUMBER OF CHANNELS : 10 $TABLE: CHANNELS ! No Name Units Minimum Maximum !--- --------------------------- --------------- -------------- -------------- 1 Pressure decibar 3 52 2 Temperature:Primary 'deg C (ITS90)' 8.4075 8.6959 3 Transmissivity %/metre 31.4 54.9 4 Fluorescence:URU:Seapoint mg/m^3 0.657 3.912 5 PAR uE/m^2/sec 0 157.115 6 PAR:Reference uE/m^2/sec 18.648 18.648 7 Salinity:T0:C0 PSS-78 27.7744 29.0617 8 Oxygen:Dissolved:SBE mL/L 4.977 6.775 9 Oxygen:Dissolved:SBE umol/kg 217.289 296.0864 10 Number_of_bin_records n/a 15 78 $END $TABLE: CHANNEL DETAIL ! No Pad Start Width Format Type Decimal_Places !--- ---- ----- ----- ------ ---- -------------- 1 -99 ' ' 7 F ' ' 1 2 -99 ' ' 9 F ' ' 4 3 -99 ' ' 6 F ' ' 1 4 -99 ' ' 8 F ' ' 3 5 -99 ' ' 7 F ' ' 1 6 -99 ' ' 7 F ' ' 1 7 -99 ' ' 9 F ' ' 4 8 -99 ' ' 7 F ' ' 2 9 -99 ' ' 6 F ' ' 1 10 ' ' ' ' 5 I I 0 $END $REMARKS This file converted from Sea-Bird file: P:\Cruise_Data_Processing\2013-16\Pro $END *ADMINISTRATION MISSION : 2013-16 AGENCY : 'WVL, Marine Environment and Habitat Science,' CONTINUED : ' Vancouver, B.C.' COUNTRY : Canada PROJECT : Aquaculture Shellfish Carrying Capacity SCIENTIST : Sutherland T. PLATFORM : Vector *LOCATION GEOGRAPHIC AREA : Johnstone Strait STATION : MAL 32 EVENT NUMBER : 39 LATITUDE : 50 2.12000 N ! (deg min) LONGITUDE : 124 45.54000 W ! (deg min) WATER DEPTH : 48 ALTIMETER (M) : 1.95 ! custom item $REMARKS Altimeter value is distance from bottom and is calculated as the median of the deepest 2 metres of data. $END *INSTRUMENT TYPE : Sea-Bird CTD MODEL : SBE-911plus SERIAL NUMBER : 0585 $TABLE: SENSORS ! Name Abs Depth Serial No ! ----------------------------------- -------------- ---------- Temperature ' ' 4054 Conductivity ' ' 3321 'Pressure:Digiquartz with TC' ' ' 77511 Temperature:2 ' ' 4700 Conductivity:2 ' ' 1766 Fluorometer:Seapoint ' ' ' ' 'Oxygen:SBE 43' ' ' 1438 'Transmissometer:WET Labs C-Star' ' ' 1185DDR Altimeter ' ' ' ' pH ' ' 0692 PAR/Irradiance:Biospherical/Licor ' ' 4601 Unavailable ' ' ' ' $END $REMARKS SOFTWARE VERSION SEASAVE V 7.22.4 $END *HISTORY $TABLE: PROGRAMS ! Name Vers Date Time Recs In Recs Out ! -------- ------ ---------- -------- --------- --------- SBE_IOS 3.2 2013/08/15 16:45:23 4969 4969 CLEAN 5.1 2013/08/15 16:50:09 4969 4969 SHIFTDAT 3.4 2013/08/19 13:17:01 4969 4969 SHIFTDAT 3.4 2013/08/19 14:10:31 4969 4969 SHIFTDAT 3.4 2013/08/19 15:03:02 4969 4969 SHIFTDAT 3.4 2013/08/19 15:07:25 4969 4969 DELETE 6.3 2013/08/19 15:11:39 4969 2397 CTDEDIT 4.61 2013/08/20 15:49:59 2397 2332 CALIB 11.7 2013/08/27 10:14:30 2332 2332 FILTERS 4.3 2013/08/27 10:44:32 2332 2332 BINAVE 4.1.1 2013/08/27 11:27:35 2332 50 REMOVECH 8.1.1 2013/08/27 11:42:08 50 50 CHGUNITS 3.0 2013/08/27 11:42:37 50 50 REORDER 1.3 2013/08/27 11:43:08 ? ? HDREDIT2 2.6 2013/08/27 11:45:03 ? ? $END $REMARKS -CLEAN functions: 2013/08/15 16:49:31 20 Interpolation by Record Number, in Pressure Set event to last 4 characters of file name -The following SHIFT parameters were used. Shift Channel: Fluorescence:Seapoint # of Records to Advance (-ve for Delay): At REC# 0 Shift= 24.00 -The following SHIFT parameters were used. Shift Channel: pH:SBE # of Records to Advance (-ve for Delay): At REC# 0 Shift= 75.00 -The following SHIFT parameters were used. Shift Channel: Conductivity:Primary # of Records to Advance (-ve for Delay): At REC# 0 Shift= -0.50 Salinity was recalculated after shift -The following SHIFT parameters were used. Shift Channel: Conductivity:Secondary [S/m] # of Records to Advance (-ve for Delay): At REC# 0 Shift= -0.50 Salinity was recalculated after shift -The following DELETE parameters were used: Surface Record Removal: Last Press Min Maximum Surface Pressure (relative): 10.00 Surface Swell Pressure Tolerance: 1.00 Pressure filtered over width: 15 Swells deleted. Warning message if pressure difference of 2.00 Drop rates < 0.30m/s (calculated over 11 points) will be deleted. Drop rate applies in the range 10.00 to 42.11 dbars Sample interval (from FILE section of header) = 0.042 seconds. -CTDEDIT 2013/08/20 15:49:59 65 records were deleted in this editing session. No data values were changed. -CALIB parameters: 2013/08/27 10:14:30 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = P:\Cruise_Data_Processing\2013-16\Processing\doc\2013-16-recal1.ccf Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 18 Oxygen:Dissolved:SBE mL/L 10 0.0000000E+00 0.1070100E+01 -The following FILTER parameters were used. Median filter was used. Filter width = 11 The following channel(s) were filtered. Fluorescence:Seapoint -The following BINAVE parameters were used: Bin channel = Pressure Averaging interval = 1.00 Minimum bin value = 0.000 Bin value was used Interpolated values were NOT used for empty bins Channel 'NUMBER_OF_BIN_RECORDS' was added to file. -REMOVECH 2013/08/27 11:42:08 The following CHANNEL(S) were removed: Scan_Number Temperature:Secondary [deg C (ITS90)] Conductivity:Primary [S/m] Conductivity:Secondary [S/m] Oxygen:Voltage:SBE [volts] pH:SBE [pH Units] Altimeter [metres] Descent_Rate [m/s] Status:Pump Salinity:T1:C1 [PSS-78] Flag -CHANGE units: 'Oxygen:Dissolved:SBE [mL/L]' changed from mL/L to umol/kg -HEADER EDITS: 2013/08/27 11:45:03 Applied edit header: P:\Cruise_Data_Processing\2013-16\Processing\doc\2013-16-HDR.TXT Channel 1: Pressure [decibar] Units: dbars ==> decibar Format: F10.3 ==> F7.1 Channel 4: Fluorescence:URU:Seapoint [mg/m^3] Name: Fluorescence:Seapoint ==> Fluorescence:URU:Seapoint Channel 5: PAR [uE/m^2/sec] Format: F11.3 ==> F7.1 Channel 8: Oxygen:Dissolved:SBE [mL/L] Format: F8.3 ==> F7.2 Channel 6: PAR:Reference [uE/m^2/sec] Format: F11.3 ==> F7.1 $END *COMMENTS SBE HEADER Sea-Bird SBE 9 Data File: FileName = E:\CTD data\2013-16\2013-16-0039.hex Software Version Seasave V 7.22.4 Temperature SN = 4054 Conductivity SN = 3321 Number of Bytes Per Scan = 40 Number of Voltage Words = 5 Number of Scans Averaged by the Deck Unit = 1 System UpLoad Time = Apr 04 2013 10:04:25 NMEA Latitude = 50 02.12 N NMEA Longitude = 124 45.54 W NMEA UTC (Time) = Apr 04 2013 17:03:35 Store Lat/Lon Data = Append to Every Scan SBE 11plus V 5.1e number of scans to average = 1 pressure baud rate = 9600 NMEA baud rate = 4800 surface PAR voltage added to scan A/D offset = 0 Latitude/Longitude added to scan GPIB address = 1 advance primary conductivity 0.073 seconds advance secondary conductivity 0.073 seconds S> Ship: Vector Station: Mal 32 Depth: 48 System UTC = Apr 04 2013 17:04:25 # nquan = 19 # nvalues = 4969 # units = specified # name 0 = scan: Scan Count # name 1 = prDM: Pressure, Digiquartz [db] # name 2 = t090C: Temperature [ITS-90, deg C] # name 3 = t190C: Temperature, 2 [ITS-90, deg C] # name 4 = c0S/m: Conductivity [S/m] # name 5 = c1S/m: Conductivity, 2 [S/m] # name 6 = CStarTr0: Beam Transmission, WET Labs C-Star [%] # name 7 = flSP: Fluorescence, Seapoint # name 8 = sbeox0V: Oxygen raw, SBE 43 [V] # name 9 = par: PAR/Irradiance, Biospherical/Licor # name 10 = spar: SPAR/Surface Irradiance # name 11 = ph: pH # name 12 = altM: Altimeter [m] # name 13 = dz/dtM: Descent Rate [m/s] # name 14 = pumps: Pump Status # name 15 = sal00: Salinity, Practical [PSU] # name 16 = sal11: Salinity, Practical, 2 [PSU] # name 17 = sbeox0ML/L: Oxygen, SBE 43 [ml/l], WS = 2 # name 18 = flag: flag # span 0 = 1, 4969 # span 1 = 1.883, 52.107 # span 2 = 8.3932, 8.7154 # span 3 = 8.3933, 8.7215 # span 4 = 2.987988, 3.102207 # span 5 = 2.988769, 3.102169 # span 6 = 74.4114, 86.3370 # span 7 = 5.7387e-01, 4.4933e+00 # span 8 = 2.0293, 2.6569 # span 9 = 1.0000e-12, 5.9732e+02 # span 10 = 1.6783e+01, 2.9837e+02 # span 11 = 8.752, 9.015 # span 12 = 1.68, 53.09 # span 13 = -0.732, 0.647 # span 14 = 0, 1 # span 15 = 27.7158, 29.0633 # span 16 = 27.7289, 29.0625 # span 17 = 4.64064, 6.57451 # span 18 = 0.0000e+00, 0.0000e+00 # interval = seconds: 0.0416667 # start_time = Apr 04 2013 17:03:35 [NMEA time, header] # bad_flag = -9.990e-29 # # # # # 4054 # 05-Apr-11 # 1 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.000 # 4.38616647e-003 # 6.44021277e-004 # 2.29653646e-005 # 2.07703526e-006 # 1000.000 # 1.00000000 # 0.0000 # # # # # # 3321 # 30-Mar-11 # 1 # # 0.0000 # 2000.0000 # 0 # # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.0 # -9.57000000e-008 # # # -9.95145189e+000 # 1.44572859e+000 # 5.86560922e-004 # 3.53926320e-005 # -9.57000000e-008 # 3.2500e-006 # # 0.00000000e+000 # # 1.00000000 # 0.00000 # # # # # # 77511 # 22-Apr-11 # -3.951550e+004 # -4.415130e-001 # 1.282560e-002 # 3.560600e-002 # 0.000000e+000 # 3.030045e+001 # -4.415690e-004 # 4.342710e-006 # 1.736800e-009 # 0.99989923 # -1.74061 # 0.000000e+000 # 1.288270e-002 # -8.164490e+000 # # # # # # 4700 # 01-Apr-11 # 1 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.000 # 4.34734833e-003 # 6.38029851e-004 # 2.09607631e-005 # 1.76044142e-006 # 1000.000 # 1.00000000 # 0.0000 # # # # # # 1766 # 29-Mar-11 # 1 # # 0.0000 # 2000.0000 # 0 # # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.0 # -9.57000000e-008 # # # -4.12820479e+000 # 4.88252028e-001 # -6.06897281e-004 # 5.34819999e-005 # -9.57000000e-008 # 3.2500e-006 # # 0.00000000e+000 # # 1.00000000 # 0.00000 # # # # # # # # # 2 # 0.000 # # # # # # # # # 1438 # 02-Apr-11p # 1 # # # 0.0000 # 0.0000e+000 # 0.0000 # 0.00e+000 # 0.0000 # 0.0 # # # # 4.5380e-001 # -0.5130 # -1.7303e-003 # 7.3264e-005 # -1.4010e-006 # 2.5826e+000 # 1.92630e-004 # -4.64800e-002 # 3.6000e-002 # 1.3800 #

-3.3000e-002

#

5.0000e+003

#

1.4500e+003

# # # # # # # 1185DDR # Jan 31-2013 # 19.6127 # -1.1179 # 0.000 # # # # # # # # 15.000 # 0.000 # # # # # # # # # 0692 # 29 Dec 2010 # 4.6518 # 2.5397 # # # # # # 4601 # Mar 2011 # 1.00000000 # 0.00000000 # 4219409282.69999980 # 1.00000000 # -0.34320000 # # # # # # # # # 16504 # 16-MAR-2011 # 1527.28000000 # 1.00000000 # # # # datcnv_date = Aug 14 2013 14:58:57, 7.22.5 [datcnv_vars = 15] # datcnv_in = P:\Cruise_Data_Processing\2013-16\RAW\CTD\2013-16-0039.hex P:\Crui se_Data_Processing\2013-16\Processing\doc\2013-16-ctd.XMLCON # datcnv_skipover = 0 # datcnv_ox_hysteresis_correction = no # wildedit_date = Aug 14 2013 15:29:33, 7.22.5 # wildedit_in = P:\Cruise_Data_Processing\2013-16\Processing\convert\2013-16-003 9.cnv # wildedit_pass1_nstd = 2.0 # wildedit_pass2_nstd = 5.0 # wildedit_pass2_mindelta = 0.000e+000 # wildedit_npoint = 50 # wildedit_vars = prDM t090C t190C c0S/m c1S/m # wildedit_excl_bad_scans = yes # alignctd_date = Aug 15 2013 16:09:34, 7.22.5 # alignctd_in = P:\Cruise_Data_Processing\2013-16\Processing\wildedit\2013-16-00 39.cnv # alignctd_adv = sbeox0V 4.500 # celltm_date = Aug 15 2013 16:24:08, 7.22.5 # celltm_in = P:\Cruise_Data_Processing\2013-16\Processing\align\2013-16-0039.cn v # celltm_alpha = 0.0200, 0.0300 # celltm_tau = 9.0000, 9.0000 # celltm_temp_sensor_use_for_cond = primary, secondary # Derive_date = Aug 15 2013 16:27:39, 7.22.5 [derive_vars = 3] # Derive_in = P:\Cruise_Data_Processing\2013-16\Processing\celltm\2013-16-0039.c nv P:\Cruise_Data_Processing\2013-16\Processing\doc\2013-16-ctd.XMLCON # derive_time_window_docdt = seconds: 2 # derive_ox_tau_correction = yes # file_type = ascii END* CTDEDIT was used to remove a few records from near the top and bottom of the cast. --------------------------------------------------------------------------------- Data Processing Notes: ---------------------- Transmissivity, Fluorescence, PAR and PAR:Reference data are nominal and unedited except that some records were removed in editing temperature and salinity. For details on how the transmissivity calibration parameters were calculated see the document in folder "\cruise_data\documents\transmissivity". Based on the recommendation from SeaBird, the method for calibration of Dissolved Oxygen concentration was changed from that used for 2011 and some 2012 cruises. For more information see the SeaBird Application Note #64-2, June 2012 revision. The Oxygen:Dissolved:SBE data are considered, very roughly, to be: ±1.0 mL/L from 0 to 35db ±0.3 mL/L from 35 to 150db ±0.08 mL/L below 150db The comparison of CTD salinity with bottle samples did not produce useful results. The two CTD salinity channels are in reasonable agreement with each other, and the temperature and conductivity sensors have only been used for 2 other cruises since their last factory calibration. A pH sensor was attached to the CTD, but the data are not included in the files to be placed in the IOS Data Library because no field calibration information was available at the time of processing, and there are some concerns about how the sensors perform. For details on the processing see the report: 2013-16-proc.doc. --------------------------------------------------------------------------------- *CALIBRATION $TABLE: CORRECTED CHANNELS ! Name Units Fmla Pad Coefficients ! ---------------------- ------ ---- ------ ------------ Oxygen:Dissolved:SBE mL/L 10 -99 () (0 1.0701) $END !--1--- ---2---- --3-- ---4--- --5--- --6--- ---7---- --8--- --9-- -10- !Pressu Temperat Trans Fluores PAR PAR: Salinity Oxygen Oxyge Numb !re ure: missi cence: Refere :T0:C0 : n: er_o ! Primary vity URU: nce Dissol Disso ~bin ! Seapoin ved: lved: _rec ! t SBE SBE ords !------ -------- ----- ------- ------ ------ -------- ------ ----- ---- *END OF HEADER 3.0 8.6959 31.4 3.912 157.1 18.6 27.7744 6.78 296.1 15 4.0 8.6022 35.6 3.786 105.0 18.6 28.0005 6.02 263.2 44 5.0 8.4749 39.0 2.735 71.3 18.6 28.2983 5.82 254.3 39 6.0 8.4413 42.2 2.206 48.4 18.6 28.3971 5.71 249.6 40 7.0 8.4311 44.5 1.824 34.3 18.6 28.4970 5.65 246.8 41 8.0 8.4274 46.5 1.537 25.3 18.6 28.5434 5.62 245.5 41 9.0 8.4111 47.6 1.553 19.4 18.6 28.5509 5.59 244.3 39 10.0 8.4075 48.6 1.295 15.3 18.6 28.5840 5.58 243.6 38 11.0 8.4396 48.6 1.402 12.2 18.6 28.6093 5.55 242.6 39 12.0 8.4449 48.6 1.358 9.9 18.6 28.6142 5.53 241.4 39 13.0 8.4326 49.3 1.353 8.1 18.6 28.6200 5.50 240.0 39 14.0 8.4168 49.6 1.295 6.5 18.6 28.6334 5.48 239.5 39 15.0 8.4182 50.5 1.261 5.3 18.6 28.6480 5.49 239.7 40 16.0 8.4419 49.8 1.271 4.4 18.6 28.6588 5.50 240.2 38 17.0 8.4580 49.3 1.295 3.6 18.6 28.6666 5.49 239.5 39 18.0 8.4896 48.5 1.286 3.0 18.6 28.6944 5.45 237.9 39 19.0 8.5021 49.6 1.355 2.5 18.6 28.7196 5.41 236.3 39 20.0 8.5153 49.8 1.237 2.0 18.6 28.7563 5.40 235.8 40 21.0 8.5163 49.9 1.193 1.6 18.6 28.7630 5.37 234.5 39 22.0 8.5180 50.2 1.285 1.4 18.6 28.7785 5.35 233.8 40 23.0 8.5229 50.3 1.181 1.1 18.6 28.8016 5.35 233.8 39 24.0 8.5229 50.5 1.159 0.9 18.6 28.8071 5.34 233.1 39 25.0 8.5272 50.7 1.140 0.8 18.6 28.8165 5.33 232.8 40 26.0 8.5285 51.0 1.140 0.6 18.6 28.8247 5.30 231.4 39 27.0 8.5299 50.7 1.093 0.5 18.6 28.8409 5.28 230.6 40 28.0 8.5282 51.3 1.085 0.4 18.6 28.8628 5.27 230.3 37 29.0 8.5270 51.5 1.035 0.4 18.6 28.8719 5.26 229.8 40 30.0 8.5263 51.4 1.048 0.3 18.6 28.8786 5.25 229.2 39 31.0 8.5265 51.4 1.063 0.3 18.6 28.8844 5.23 228.2 40 32.0 8.5247 51.9 1.067 0.2 18.6 28.9023 5.22 228.1 40 33.0 8.5245 52.1 0.929 0.2 18.6 28.9121 5.23 228.3 40 34.0 8.5246 51.9 0.938 0.1 18.6 28.9122 5.22 228.1 41 35.0 8.5250 52.2 0.888 0.1 18.6 28.9190 5.21 227.4 41 36.0 8.5249 52.2 0.902 0.1 18.6 28.9272 5.17 226.0 41 37.0 8.5215 52.7 0.886 0.1 18.6 28.9486 5.16 225.4 41 38.0 8.5194 52.8 0.841 0.1 18.6 28.9570 5.15 224.8 41 39.0 8.5161 53.1 0.832 0.1 18.6 28.9673 5.14 224.6 43 40.0 8.5135 53.3 0.809 0.0 18.6 28.9743 5.14 224.4 51 41.0 8.5131 53.5 0.825 0.0 18.6 28.9757 5.13 224.2 65 42.0 8.5125 53.4 0.819 0.0 18.6 28.9778 5.13 223.8 69 43.0 8.5112 53.4 0.845 0.0 18.6 28.9803 5.12 223.3 70 44.0 8.5092 53.6 0.776 0.0 18.6 28.9848 5.09 222.2 70 45.0 8.5016 53.7 0.797 0.0 18.6 29.0023 5.08 221.6 70 46.0 8.4973 53.8 0.780 0.0 18.6 29.0132 5.06 220.9 69 47.0 8.4964 53.9 0.752 0.0 18.6 29.0172 5.05 220.4 74 48.0 8.4912 54.2 0.755 0.0 18.6 29.0305 5.03 219.7 75 49.0 8.4884 54.3 0.711 0.0 18.6 29.0365 5.01 218.6 77 50.0 8.4792 54.7 0.697 0.0 18.6 29.0564 4.98 217.3 72 51.0 8.4774 54.9 0.682 0.0 18.6 29.0616 4.98 217.6 78 52.0 8.4776 54.5 0.657 0.0 18.6 29.0617 4.99 218.0 39