*2014/11/20 09:58:33.17 *IOS HEADER VERSION 1.10 2011/10/26 2011/10/26 *FILE START TIME : UTC 2013/06/29 09:41:49.000 TIME INCREMENT : 0 0 0 0.416667E-01 0 ! (day hr min sec ms) NUMBER OF RECORDS : 11 DATA DESCRIPTION : Bottle:Rosette:Up:Stop + CTD:Up FILE TYPE : ASCII CRC : EA88CE5B NUMBER OF CHANNELS : 28 $TABLE: CHANNELS ! No Name Units Minimum Maximum !--- ---------------------------- --------------- -------------- -------------- 1 Bottle:Firing_Sequence n/a 1 11 2 Bottle_Number n/a 1 11 3 Pressure decibar 2.416 145.005 4 Temperature:Primary 'deg C (ITS90)' 7.8158 9.7925 5 Transmissivity %/metre 13.6 49.5 6 Fluorescence:URU:Seapoint mg/m^3 0.299 0.857 7 PAR uE/m^2/sec 0 2.377 8 PAR:Reference uE/m^2/sec 13.054 13.054 9 Salinity:T0:C0 PSS-78 30.8828 32.7587 10 Oxygen:Dissolved:SBE mL/L 2.818 4.093 11 Oxygen:Dissolved:SBE umol/kg 122.7 178.5 12 Number_of_bin_records n/a 121 121 13 Sample_Number n/a 96 106 14 Temperature:Draw 'deg C (ITS90)' 8.1 9.8 15 Salinity:Bottle PSS-78 32.3288 32.3288 16 Flag:Salinity:Bottle n/a 17 Chlorophyll:Extracted mg/m^3 0.74 0.9 18 Flag:Chlorophyll:Extracted n/a 19 Phaeo-Pigment:Extracted mg/m^3 0.53 0.64 20 Oxygen:Dissolved mL/L 2.771 4.107 21 Oxygen:Dissolved umol/kg 120.6293 179.0909 22 Flag:Oxygen:Dissolved n/a 23 Nitrate_plus_Nitrite umol/L 25.4 31 24 Flag:Nitrate_plus_Nitrite n/a 25 Silicate umol/L 46.4 50.4 26 Flag:Silicate n/a 27 Phosphate umol/L 2.1 2.44 28 Flag:Phosphate n/a $END $TABLE: CHANNEL DETAIL ! No Pad Start Width Format Type Decimal_Places !--- ---- ----- ----- ------ ---- -------------- 1 -99 ' ' 3 I I 0 2 -99 ' ' 3 I I 0 3 -99 ' ' 7 F ' ' 1 4 -99 ' ' 9 F ' ' 4 5 -99 ' ' 6 F ' ' 1 6 -99 ' ' 8 F ' ' 3 7 -99 ' ' 7 F ' ' 1 8 -99 ' ' 7 F ' ' 1 9 -99 ' ' 9 F ' ' 4 10 -99 ' ' 7 F ' ' 2 11 -99 ' ' 6 F ' ' 1 12 ' ' ' ' 5 I I 0 13 -99 ' ' 5 I I 0 14 -99 ' ' 5 F R4 1 15 -99 ' ' 9 F R4 4 16 0 ' ' 3 NQ C ' ' 17 -99 ' ' 7 F R4 2 18 0 ' ' 3 NQ C ' ' 19 -99 ' ' 7 F R4 2 20 -99 ' ' 8 F R4 3 21 -99 ' ' 6 F ' ' 1 22 0 ' ' 3 NQ C ' ' 23 -99 ' ' 6 F R4 1 24 0 ' ' 3 NQ C ' ' 25 -99 ' ' 6 F R4 1 26 0 ' ' 3 NQ C ' ' 27 -99 ' ' 7 F R4 2 28 0 ' ' 3 NQ C ' ' $END $REMARKS Flag channels initialized with zeros. Non-zero values have the following significance: -------------------------------------------------------------------------------------- 1 = Sample for this measurement was collected but not analyzed. Sample lost. 2 = Acceptable Measurement 3 = Questionable Measurement (Probably Good) 4 = Poor Measurement (Probably Bad) 5 = Measurement Not Reported (Bad) 6 = Mean of replicate measurements 7 = Manual chromatographic peak measurement 8 = Irregular digital chromatographic peak integration 9 = Sample was planned for this measurement from this bottle but was not collected -------------------------------------------------------------------------------------- $END *ADMINISTRATION MISSION : 2013-13 AGENCY : IOS, Ocean Sciences Division, Sidney, B.C. COUNTRY : Canada PROJECT : SoG / JdF Water Properties Survey SCIENTIST : Chandler P. PLATFORM : Vector *LOCATION GEOGRAPHIC AREA : Strait of Georgia / Juan de Fuca Strait STATION : 62 EVENT NUMBER : 27 LATITUDE : 48 22.80000 N ! (deg min) LONGITUDE : 123 2.59000 W ! (deg min) WATER DEPTH : 146 ALTIMETER (M) : 5.15 ! custom item $REMARKS Altimeter value is distance from bottom and is calculated as the median of the deepest 2 metres of data. $END *INSTRUMENT TYPE : Sea-Bird CTD MODEL : SBE-911plus SERIAL NUMBER : 0585 $TABLE: SENSORS ! Name Abs Depth Serial No ! ----------------------------------- -------------- ---------- Temperature ' ' 4054 Conductivity ' ' 3321 'Pressure:Digiquartz with TC' ' ' 77511 Temperature:2 ' ' 4700 Conductivity:2 ' ' 1766 Fluorometer:Seapoint ' ' 2356 'Oxygen:SBE 43' ' ' 0047 'Transmissometer:WET Labs C-Star' ' ' 1185DDR Altimeter ' ' ' ' pH ' ' 0692 PAR/Irradiance:Biospherical/Licor ' ' 4601 Unavailable ' ' ' ' $END $REMARKS SOFTWARE VERSION SEASAVE V 7.22.4 $END *HISTORY $TABLE: PROGRAMS ! Name Vers Date Time Recs In Recs Out ! ------------ ------ ---------- -------- --------- --------- SBE_IOS 3.2.1 2013/12/19 13:05:26 1331 1331 CLEAN 5.1 2013/12/19 13:06:14 1331 1331 ADDSAMP 3.6 2013/12/19 13:06:45 1331 1331 BINAVE 4.1.1 2013/12/19 13:06:57 1331 11 MERGE 3.5 2014/01/07 13:27:54 11 11 CLEAN 5.1 2014/01/07 13:28:01 11 11 CALIB 11.8 2014/01/07 13:28:08 11 11 SORT 3.6 2014/01/07 13:28:19 11 11 REMOVECH 8.2 2014/01/07 13:29:02 11 11 CHGUNITS 3.1 2014/01/07 13:32:59 11 11 CHGUNITS 3.1 2014/01/07 14:03:37 11 11 REORDER 1.3 2014/01/07 14:04:09 ? ? HDREDIT2 2.6 2014/01/07 14:04:23 ? ? CHANGE_FLAGS 2.0 2014/11/20 09:58:33 11 11 $END $REMARKS -CLEAN functions: 2013/12/19 13:06:10 20 Reset #RECS, MIN & MAX values in header. Set event to last 4 characters of file name -The following ADDSAMP parameters were used: Sample Number Lookup File: P:\Cruise_Data_Processing\2013-13\Processing\hydro\addsamp.csv Bottle Channel Name: Bottle_Number -The following BINAVE parameters were used: Bin channel = Bottle_Number Averaging interval = 1.00 Minimum bin value = 0.000 Average value was used Interpolated values were NOT used for empty bins Channel 'NUMBER_OF_BIN_RECORDS' was added to file. -The following MERGE parameters were used: 2014/01/07 13:27:54 Merge Channel: Bottle_Number Merge Scheme Used: Add Secondary to Primary Overlap Scheme Used: Keep Primary Primary Channels to Include: ALL Secondary Channels to Include: Event_Number, Bottle:Position, Salinity:Bottle, Flag:Salinity:Bottle, Chlorophyll:Extracted, Flag:Chlorophyll:Extracted, Phaeo-Pigment:Extracted, Oxygen:Dissolved, Flag:Oxygen:Dissolved, Temperature:Draw, Nitrate_plus_Nitrite, Flag:Nitrate_plus_Nitrite, Silicate, Flag:Silicate, Phosphate, Flag:Phosphate, Ammonium, Flag:Ammonium, pH, Flag:pH, Dimethyl_Sulphide, Flag:Dimethyl_Sulphide Primary file : P:\Cruise_Data_Processing\2013-13\Processing\hydro\2013-13-0027.samavg Secondary file: P:\Cruise_Data_Processing\2013-13\Processing\hydro\2013-13-0027.mrgcln1s -SORT parameters: 2014/01/07 13:27:46 Sorted in ascending order of channel Bottle_Number -CLEAN functions: 2014/01/07 13:28:01 20 Reset #RECS, MIN & MAX values in header. Remove Sea-Bird comments from the header. Remove remark heading: "Comments from secondary" -CALIB parameters: 2014/01/07 13:28:08 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = P:\Cruise_Data_Processing\2013-13\Processing\doc\2013-13-recal1.ccf Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 19 Oxygen:Dissolved:SBE mL/L 10 0.0000000E+00 0.1075200E+01 -SORT parameters: 2014/01/07 13:28:19 Sorted in ascending order of channel Pressure -REMOVECH 2014/01/07 13:29:02 The following CHANNEL(S) were removed: Scan_Number Temperature:Secondary [deg C (ITS90)] Conductivity:Primary [S/m] Conductivity:Secondary [S/m] Oxygen:Voltage:SBE [volts] pH:SBE [pH Units] Altimeter [metres] Descent_Rate [m/s] Status:Pump Salinity:T1:C1 [PSS-78] Flag -CHANGE units: Temperature reference channel: Temp* Salinity reference channel: Sal* 'Oxygen:Dissolved:SBE' changed from mL/L to umol/kg -CHANGE units: Temperature reference channel: Temperature:Draw Salinity reference channel: Sal* 'Oxygen:Dissolved' changed from mL/L to umol/kg -HEADER EDITS: 2014/01/07 14:04:23 Applied edit header: P:\Cruise_Data_Processing\2013-13\Processing\doc\HYDRO\2013-13-bot-hdr.txt Channel 1: Bottle:Firing_Sequence [n/a] Name: Bottle_Number ==> Bottle:Firing_Sequence Channel 2: Bottle_Number [n/a] Name: Bottle:Position ==> Bottle_Number Channel 3: Pressure [decibar] Units: dbars ==> decibar Format: F10.3 ==> F7.1 Channel 6: Fluorescence:URU:Seapoint [mg/m^3] Name: Fluorescence:Seapoint ==> Fluorescence:URU:Seapoint Channel 7: PAR [uE/m^2/sec] Format: F11.3 ==> F7.1 Channel 10: Oxygen:Dissolved:SBE [mL/L] Format: F8.3 ==> F7.2 Channel 14: Temperature:Draw [deg C (ITS90)] Units: ==> deg C (ITS90) Format: F7.2 ==> F5.1 Channel 15: Salinity:Bottle [PSS-78] Units: ==> PSS-78 Channel 16: Flag:Salinity:Bottle [n/a] Units: ==> n/a Channel 17: Chlorophyll:Extracted [mg/m^3] Units: ==> mg/m^3 Channel 18: Flag:Chlorophyll:Extracted [n/a] Units: ==> n/a Channel 19: Phaeo-Pigment:Extracted [mg/m^3] Units: ==> mg/m^3 Channel 20: Oxygen:Dissolved [mL/L] Units: ==> mL/L Channel 22: Flag:Oxygen:Dissolved [n/a] Units: ==> n/a Channel 23: Nitrate_plus_Nitrite [umol/L] Units: ==> umol/L Channel 24: Flag:Nitrate_plus_Nitrite [n/a] Units: ==> n/a Channel 25: Silicate [umol/L] Units: ==> umol/L Channel 26: Flag:Silicate [n/a] Units: ==> n/a Channel 27: Phosphate [umol/L] Units: ==> umol/L Channel 28: Flag:Phosphate [n/a] Units: ==> n/a Channel 8: PAR:Reference [uE/m^2/sec] Format: F11.3 ==> F7.1 $END *COMMENTS Sample_Number 102: OXY-1: Bad stir bar. Titration dose rate reached only 93.2% therefore the endpoint was likely overshot. Sample_Number 103: PO4: bad dup - zooplankton in tube Analysis methods: ----------------- Chlorophyll samples were filtered onto 25mm GF/F filters and stored in glass scintillation vials at -20C prior to analysis. Samples were extracted in 90% acetone at -20C for 24 hours in the lab and analyzed on a Turner 10AU fluorometer calibrated with commercially pure chlorophyll a (Sigma). Fluorescence readings taken before and after acidification were used to calculate chlorophyll and phaeopigment concentrations (Holm-Hansen et al 1965). Chlorophyll samples were analyzed at IOS in room 1409. The average of two samples is reported. Variability is assessed as the CV% (std dev / mean*100). For details see worksheet “CV%” in file QF2013-13CHL*.xls. Phaeopigment data are provided for information only and no quality flags are assigned to them. Oxygen samples were analyzed at sea on an automated Winkler titration system (Brinkmann Dosimat model 665 for titrations, Dosimat model 865 for dispensing standards and a PC950 Colorimeter controlled by AutoOxy software V3.4) with modifications based on Carpenter (1965) and adhering to WOCE protocols (Culberson 1991). For details including a duplicate analysis, see document QF2013-13OXY*.xls. Salinity samples were collected in 200 mL type ll glass bottles with reusable silicone inserts supplied by Xiamen Cuten Accessories Industry Limited and screw caps supplied by Ocean Scientific International Limited. They were analyzed in a temperature-controlled lab on a Guildline 8400B Salinometer (S/N 68572) standardized with IAPSO standard seawater 15 to 21 days after collection. Full details are in file QF2013-13SAL*.xls. Nutrient samples were collected in plastic tubes and quick frozen in aluminum blocks stored in -20 freezer. One set of samples is collected and frozen immediately. Another set of samples from 400m and deeper (to be used for silicate analysis) is collected and stored at 4C in the dark. All samples are returned to IOS for analysis. They were analyzed using an Astoria analyzer following methods described in Barwell-Clarke and Whitney (1996). For raw data, precision and duplicate details see spreadsheet QF2013-13nuts*.xls. References: 1. Barwell-Clarke, J. and Whitney, F. 1996. Institute of Ocean Sciences Nutrient Methods and Analysis. Canadian Technical Report of Hydrography and Ocean Sciences, No. 182, 43 pp. 2. Carpenter, J.H. 1965. The Chesapeake Bay Institute Technique for the Winkler Dissolved Oxygen Method. Limmnol. & Oceanogr., 10: 141-143. 3. Culberson, C.H. 1991. Dissolved oxygen. WOCE Hydrographic Programme Operations and Methods (July 1991). 15pp. 4. Holm-Hansen, O., Lorenzen, C.J., Holmes, R.W., and Strickland J.D.H. 1965. Fluorometric Determination of Chlorophyll. J.du Cons. Intl. Pour l’Epl. De la Mer. 30:3-15. * For PDF versions of these papers see folder \\Cruise_Data\DOCUMENTS\Analysis Reference Papers --------------------------------------------------------------------------------- Data Processing Notes: ---------------------- Transmissivity, Fluorescence, PAR and PAR:Reference data are nominal and unedited except that some records were removed in editing temperature and salinity. For details on how the transmissivity calibration parameters were calculated see the document in folder "\cruise_data\documents\transmissivity". Based on the recommendation from SeaBird, the method for calibration of Dissolved Oxygen concentration was changed from that used for 2011 and some 2012 cruises. For more information see the SeaBird Application Note #64-2, June 2012 revision. A pH sensor was attached to the CTD, but the data are not included in the files to be placed in the IOS Data Library because no field calibration information was available at the time of processing, and there are some concerns about how the sensors perform. For details on the processing see the report: 2013-13-proc.doc. --------------------------------------------------------------------------------- *CALIBRATION $TABLE: CORRECTED CHANNELS ! Name Units Fmla Pad Coefficients ! ---------------------- ------ ---- ------ ------------ Oxygen:Dissolved:SBE mL/L 10 -99 () (0 1.0752) $END !1- 2- --3--- ---4---- --5-- ---6--- --7--- --8--- ---9---- --10-- --11- -12- -13- -14- ---15--- 16 --17-- 18 --19-- ---20-- --21- 22 --23- 24 --25- 26 --27-- 28 !Bo Bo Pressu Temperat Trans Fluores PAR PAR: Salinity Oxygen Oxyge Numb Samp Temp Salinity Fl Chloro Fl Phaeo- Oxygen: Oxyge Fl Nitra Fl Silic Fl Phosph Fl !tt tt re ure: missi cence: Refere :T0:C0 : n: er_o le_ erat :Bottle ag phyll: ag Pigmen Dissolv n: ag te_ ag ate ag ate ag !~u ~u Primary vity URU: nce Dissol Disso ~bin Numb ure: ~o Extrac ~a t: ed Disso ~o plus_ ~t ~i ~p !en mb Seapoin ved: lved: _rec er Draw tt ted ct Extrac lved lv Nitri ri ca ha !ce er t SBE SBE ords le ed ted ed te te te te !-- -- ------ -------- ----- ------- ------ ------ -------- ------ ----- ---- ---- ---- -------- -- ------ -- ------ ------- ----- -- ----- -- ----- -- ------ -- *END OF HEADER 11 11 2.4 9.7925 48.3 0.853 2.4 13.1 30.8828 4.09 178.5 121 106 9.8 -99.0000 0 0.90 6 0.53 4.107 179.1 0 25.4 0 46.5 0 2.10 0 10 10 4.7 9.7870 48.3 0.857 1.6 13.1 30.8837 4.08 178.0 121 105 9.8 -99.0000 0 -99.00 0 -99.00 4.104 179.0 0 25.4 0 46.4 0 2.10 0 9 9 10.3 9.5706 47.9 0.783 0.3 13.1 30.9321 3.98 173.5 121 104 9.5 -99.0000 0 0.87 6 0.64 3.973 173.2 0 25.8 0 46.9 0 2.13 0 8 8 20.3 9.5524 48.7 0.723 0.0 13.1 30.9687 3.97 173.2 121 103 9.5 -99.0000 0 0.74 6 0.59 3.970 173.1 0 25.8 6 47.0 6 2.12 2 7 7 30.5 9.5277 49.3 0.657 0.0 13.1 30.9890 3.96 172.8 121 102 9.5 -99.0000 0 -99.00 0 -99.00 3.957 172.5 36 25.8 0 46.8 0 2.14 0 6 6 39.8 9.3074 49.5 0.518 0.0 13.1 31.1516 3.82 166.5 121 101 9.3 -99.0000 0 -99.00 0 -99.00 3.793 165.4 0 26.3 0 47.2 0 2.16 0 5 5 50.6 9.2583 49.2 0.484 0.0 13.1 31.2062 3.78 164.8 121 100 9.3 -99.0000 0 -99.00 0 -99.00 3.769 164.3 0 26.3 0 47.3 0 2.16 0 4 4 74.8 9.1019 49.2 0.420 0.0 13.1 31.3528 3.68 160.3 121 99 9.1 -99.0000 0 -99.00 0 -99.00 3.679 160.4 0 26.8 6 47.5 6 2.21 6 3 3 100.4 9.0628 49.0 0.406 0.0 13.1 31.4076 3.65 158.9 121 98 9.1 -99.0000 0 -99.00 0 -99.00 3.633 158.3 6 27.0 0 47.5 0 2.19 0 2 2 125.4 8.2207 39.7 0.299 0.1 13.1 32.3209 3.09 134.5 121 97 8.3 32.3288 0 -99.00 0 -99.00 3.065 133.5 0 29.5 0 49.5 0 2.33 0 1 1 145.0 7.8158 13.6 0.341 0.1 13.1 32.7587 2.82 122.7 121 96 8.1 -99.0000 0 -99.00 0 -99.00 2.771 120.6 0 31.0 0 50.4 0 2.44 0