*2014/11/20 09:58:34.06 *IOS HEADER VERSION 1.10 2011/10/26 2011/10/26 *FILE START TIME : UTC 2013/06/28 01:59:53.000 TIME INCREMENT : 0 0 0 0.416667E-01 0 ! (day hr min sec ms) NUMBER OF RECORDS : 24 DATA DESCRIPTION : Bottle:Rosette:Up:Stop + CTD:Up FILE TYPE : ASCII CRC : CEE0D151 NUMBER OF CHANNELS : 28 $TABLE: CHANNELS ! No Name Units Minimum Maximum !--- ---------------------------- --------------- -------------- -------------- 1 Bottle:Firing_Sequence n/a 1 24 2 Bottle_Number n/a 1 24 3 Pressure decibar 2.209 99.906 4 Temperature:Primary 'deg C (ITS90)' 8.6208 13.3088 5 Transmissivity %/metre 28 52.2 6 Fluorescence:URU:Seapoint mg/m^3 0.127 5.41 7 PAR uE/m^2/sec 0 96.34 8 PAR:Reference uE/m^2/sec 16.783 16.783 9 Salinity:T0:C0 PSS-78 28.3612 30.8683 10 Oxygen:Dissolved:SBE mL/L 1.041 7.192 11 Oxygen:Dissolved:SBE umol/kg 45.4 314.4 12 Number_of_bin_records n/a 34 121 13 Sample_Number n/a 1 9 14 Temperature:Draw 'deg C (ITS90)' 9.1 13.2 15 Salinity:Bottle PSS-78 30.5875 30.5875 16 Flag:Salinity:Bottle n/a 17 Chlorophyll:Extracted mg/m^3 0.52 6.91 18 Flag:Chlorophyll:Extracted n/a 19 Phaeo-Pigment:Extracted mg/m^3 0.54 2.24 20 Oxygen:Dissolved mL/L 1.31 6.724 21 Oxygen:Dissolved umol/kg 57.11959 293.941 22 Flag:Oxygen:Dissolved n/a 23 Nitrate_plus_Nitrite umol/L 8 28.4 24 Flag:Nitrate_plus_Nitrite n/a 25 Silicate umol/L 34.7 69.6 26 Flag:Silicate n/a 27 Phosphate umol/L 1.14 3.48 28 Flag:Phosphate n/a $END $TABLE: CHANNEL DETAIL ! No Pad Start Width Format Type Decimal_Places !--- ---- ----- ----- ------ ---- -------------- 1 -99 ' ' 3 I I 0 2 -99 ' ' 3 I I 0 3 -99 ' ' 7 F ' ' 1 4 -99 ' ' 9 F ' ' 4 5 -99 ' ' 6 F ' ' 1 6 -99 ' ' 8 F ' ' 3 7 -99 ' ' 7 F ' ' 1 8 -99 ' ' 7 F ' ' 1 9 -99 ' ' 9 F ' ' 4 10 -99 ' ' 7 F ' ' 2 11 -99 ' ' 6 F ' ' 1 12 ' ' ' ' 5 I I 0 13 -99 ' ' 5 I I 0 14 -99 ' ' 5 F R4 1 15 -99 ' ' 9 F R4 4 16 0 ' ' 3 NQ C ' ' 17 -99 ' ' 7 F R4 2 18 0 ' ' 3 NQ C ' ' 19 -99 ' ' 7 F R4 2 20 -99 ' ' 8 F R4 3 21 -99 ' ' 6 F ' ' 1 22 0 ' ' 3 NQ C ' ' 23 -99 ' ' 6 F R4 1 24 0 ' ' 3 NQ C ' ' 25 -99 ' ' 6 F R4 1 26 0 ' ' 3 NQ C ' ' 27 -99 ' ' 7 F R4 2 28 0 ' ' 3 NQ C ' ' $END $REMARKS Flag channels initialized with zeros. Non-zero values have the following significance: -------------------------------------------------------------------------------------- 1 = Sample for this measurement was collected but not analyzed. Sample lost. 2 = Acceptable Measurement 3 = Questionable Measurement (Probably Good) 4 = Poor Measurement (Probably Bad) 5 = Measurement Not Reported (Bad) 6 = Mean of replicate measurements 7 = Manual chromatographic peak measurement 8 = Irregular digital chromatographic peak integration 9 = Sample was planned for this measurement from this bottle but was not collected -------------------------------------------------------------------------------------- $END *ADMINISTRATION MISSION : 2013-13 AGENCY : IOS, Ocean Sciences Division, Sidney, B.C. COUNTRY : Canada PROJECT : SoG / JdF Water Properties Survey SCIENTIST : Chandler P. PLATFORM : Vector *LOCATION GEOGRAPHIC AREA : Strait of Georgia / Juan de Fuca Strait STATION : SI EVENT NUMBER : 1 LATITUDE : 48 39.79000 N ! (deg min) LONGITUDE : 123 30.10000 W ! (deg min) WATER DEPTH : 171 *INSTRUMENT TYPE : Sea-Bird CTD MODEL : SBE-911plus SERIAL NUMBER : 0585 $TABLE: SENSORS ! Name Abs Depth Serial No ! ----------------------------------- -------------- ---------- Temperature ' ' 4054 Conductivity ' ' 3321 'Pressure:Digiquartz with TC' ' ' 77511 Temperature:2 ' ' 4700 Conductivity:2 ' ' 1766 Fluorometer:Seapoint ' ' 2356 'Oxygen:SBE 43' ' ' 0047 'Transmissometer:WET Labs C-Star' ' ' 1185DDR Altimeter ' ' ' ' pH ' ' 0692 PAR/Irradiance:Biospherical/Licor ' ' 4601 Unavailable ' ' ' ' $END $REMARKS SOFTWARE VERSION SEASAVE V 7.22.4 $END *HISTORY $TABLE: PROGRAMS ! Name Vers Date Time Recs In Recs Out ! ------------ ------ ---------- -------- --------- --------- SBE_IOS 3.2.1 2013/12/19 13:05:22 1643 1643 CLEAN 5.1 2013/12/19 13:06:10 1643 1643 ADDSAMP 3.6 2013/12/19 13:06:41 1643 1643 BINAVE 4.1.1 2013/12/19 13:06:55 1643 24 MERGE 3.5 2014/01/07 13:27:53 24 24 CLEAN 5.1 2014/01/07 13:28:01 24 24 CALIB 11.8 2014/01/07 13:28:07 24 24 SORT 3.6 2014/01/07 13:28:19 24 24 REMOVECH 8.2 2014/01/07 13:29:01 24 24 CHGUNITS 3.1 2014/01/07 13:32:58 24 24 CHGUNITS 3.1 2014/01/07 14:03:36 24 24 REORDER 1.3 2014/01/07 14:04:08 ? ? HDREDIT2 2.6 2014/01/07 14:04:23 ? ? CHANGE_FLAGS 2.0 2014/11/20 09:58:34 24 24 $END $REMARKS -CLEAN functions: 2013/12/19 13:06:10 Reset #RECS, MIN & MAX values in header. Set event to last 4 characters of file name -The following ADDSAMP parameters were used: Sample Number Lookup File: P:\Cruise_Data_Processing\2013-13\Processing\hydro\addsamp.csv Bottle Channel Name: Bottle_Number -The following BINAVE parameters were used: Bin channel = Bottle_Number Averaging interval = 1.00 Minimum bin value = 0.000 Average value was used Interpolated values were NOT used for empty bins Channel 'NUMBER_OF_BIN_RECORDS' was added to file. -The following MERGE parameters were used: 2014/01/07 13:27:53 Merge Channel: Bottle_Number Merge Scheme Used: Add Secondary to Primary Overlap Scheme Used: Keep Primary Primary Channels to Include: ALL Secondary Channels to Include: Event_Number, Bottle:Position, Salinity:Bottle, Flag:Salinity:Bottle, Chlorophyll:Extracted, Flag:Chlorophyll:Extracted, Phaeo-Pigment:Extracted, Oxygen:Dissolved, Flag:Oxygen:Dissolved, Temperature:Draw, Nitrate_plus_Nitrite, Flag:Nitrate_plus_Nitrite, Silicate, Flag:Silicate, Phosphate, Flag:Phosphate, Ammonium, Flag:Ammonium, pH, Flag:pH, Dimethyl_Sulphide, Flag:Dimethyl_Sulphide Primary file : P:\Cruise_Data_Processing\2013-13\Processing\hydro\2013-13-0001.samavg Secondary file: P:\Cruise_Data_Processing\2013-13\Processing\hydro\2013-13-0001.mrgcln1s -SORT parameters: 2014/01/07 13:27:46 Sorted in ascending order of channel Bottle_Number -CLEAN functions: 2014/01/07 13:28:01 Reset #RECS, MIN & MAX values in header. Remove Sea-Bird comments from the header. Remove remark heading: "Comments from secondary" -CALIB parameters: 2014/01/07 13:28:07 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = P:\Cruise_Data_Processing\2013-13\Processing\doc\2013-13-recal1.ccf Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 19 Oxygen:Dissolved:SBE mL/L 10 0.0000000E+00 0.1075200E+01 -SORT parameters: 2014/01/07 13:28:19 Sorted in ascending order of channel Pressure -REMOVECH 2014/01/07 13:29:01 The following CHANNEL(S) were removed: Scan_Number Temperature:Secondary [deg C (ITS90)] Conductivity:Primary [S/m] Conductivity:Secondary [S/m] Oxygen:Voltage:SBE [volts] pH:SBE [pH Units] Altimeter [metres] Descent_Rate [m/s] Status:Pump Salinity:T1:C1 [PSS-78] Flag -CHANGE units: Temperature reference channel: Temp* Salinity reference channel: Sal* 'Oxygen:Dissolved:SBE' changed from mL/L to umol/kg -CHANGE units: Temperature reference channel: Temperature:Draw Salinity reference channel: Sal* 'Oxygen:Dissolved' changed from mL/L to umol/kg -HEADER EDITS: 2014/01/07 14:04:23 Applied edit header: P:\Cruise_Data_Processing\2013-13\Processing\doc\HYDRO\2013-13-bot-hdr.txt Channel 1: Bottle:Firing_Sequence [n/a] Name: Bottle_Number ==> Bottle:Firing_Sequence Channel 2: Bottle_Number [n/a] Name: Bottle:Position ==> Bottle_Number Channel 3: Pressure [decibar] Units: dbars ==> decibar Format: F10.3 ==> F7.1 Channel 6: Fluorescence:URU:Seapoint [mg/m^3] Name: Fluorescence:Seapoint ==> Fluorescence:URU:Seapoint Channel 7: PAR [uE/m^2/sec] Format: F11.3 ==> F7.1 Channel 10: Oxygen:Dissolved:SBE [mL/L] Format: F8.3 ==> F7.2 Channel 14: Temperature:Draw [deg C (ITS90)] Units: ==> deg C (ITS90) Format: F7.2 ==> F5.1 Channel 15: Salinity:Bottle [PSS-78] Units: ==> PSS-78 Channel 16: Flag:Salinity:Bottle [n/a] Units: ==> n/a Channel 17: Chlorophyll:Extracted [mg/m^3] Units: ==> mg/m^3 Channel 18: Flag:Chlorophyll:Extracted [n/a] Units: ==> n/a Channel 19: Phaeo-Pigment:Extracted [mg/m^3] Units: ==> mg/m^3 Channel 20: Oxygen:Dissolved [mL/L] Units: ==> mL/L Channel 22: Flag:Oxygen:Dissolved [n/a] Units: ==> n/a Channel 23: Nitrate_plus_Nitrite [umol/L] Units: ==> umol/L Channel 24: Flag:Nitrate_plus_Nitrite [n/a] Units: ==> n/a Channel 25: Silicate [umol/L] Units: ==> umol/L Channel 26: Flag:Silicate [n/a] Units: ==> n/a Channel 27: Phosphate [umol/L] Units: ==> umol/L Channel 28: Flag:Phosphate [n/a] Units: ==> n/a Channel 8: PAR:Reference [uE/m^2/sec] Format: F11.3 ==> F7.1 $END *COMMENTS Sample_Number 2: OXY: Copepod swirling in sample. Sample_Number 9: OXY: Odd curve near end. There may have been a bubble on the probe. Endpoint was overshot. Over-titrated and recalculated value. Analysis methods: ----------------- Chlorophyll samples were filtered onto 25mm GF/F filters and stored in glass scintillation vials at -20C prior to analysis. Samples were extracted in 90% acetone at -20C for 24 hours in the lab and analyzed on a Turner 10AU fluorometer calibrated with commercially pure chlorophyll a (Sigma). Fluorescence readings taken before and after acidification were used to calculate chlorophyll and phaeopigment concentrations (Holm-Hansen et al 1965). Chlorophyll samples were analyzed at IOS in room 1409. The average of two samples is reported. Variability is assessed as the CV% (std dev / mean*100). For details see worksheet “CV%” in file QF2013-13CHL*.xls. Phaeopigment data are provided for information only and no quality flags are assigned to them. Oxygen samples were analyzed at sea on an automated Winkler titration system (Brinkmann Dosimat model 665 for titrations, Dosimat model 865 for dispensing standards and a PC950 Colorimeter controlled by AutoOxy software V3.4) with modifications based on Carpenter (1965) and adhering to WOCE protocols (Culberson 1991). For details including a duplicate analysis, see document QF2013-13OXY*.xls. Salinity samples were collected in 200 mL type ll glass bottles with reusable silicone inserts supplied by Xiamen Cuten Accessories Industry Limited and screw caps supplied by Ocean Scientific International Limited. They were analyzed in a temperature-controlled lab on a Guildline 8400B Salinometer (S/N 68572) standardized with IAPSO standard seawater 15 to 21 days after collection. Full details are in file QF2013-13SAL*.xls. Nutrient samples were collected in plastic tubes and quick frozen in aluminum blocks stored in -20 freezer. One set of samples is collected and frozen immediately. Another set of samples from 400m and deeper (to be used for silicate analysis) is collected and stored at 4C in the dark. All samples are returned to IOS for analysis. They were analyzed using an Astoria analyzer following methods described in Barwell-Clarke and Whitney (1996). For raw data, precision and duplicate details see spreadsheet QF2013-13nuts*.xls. References: 1. Barwell-Clarke, J. and Whitney, F. 1996. Institute of Ocean Sciences Nutrient Methods and Analysis. Canadian Technical Report of Hydrography and Ocean Sciences, No. 182, 43 pp. 2. Carpenter, J.H. 1965. The Chesapeake Bay Institute Technique for the Winkler Dissolved Oxygen Method. Limmnol. & Oceanogr., 10: 141-143. 3. Culberson, C.H. 1991. Dissolved oxygen. WOCE Hydrographic Programme Operations and Methods (July 1991). 15pp. 4. Holm-Hansen, O., Lorenzen, C.J., Holmes, R.W., and Strickland J.D.H. 1965. Fluorometric Determination of Chlorophyll. J.du Cons. Intl. Pour l’Epl. De la Mer. 30:3-15. * For PDF versions of these papers see folder \\Cruise_Data\DOCUMENTS\Analysis Reference Papers --------------------------------------------------------------------------------- Data Processing Notes: ---------------------- Transmissivity, Fluorescence, PAR and PAR:Reference data are nominal and unedited except that some records were removed in editing temperature and salinity. For details on how the transmissivity calibration parameters were calculated see the document in folder "\cruise_data\documents\transmissivity". Based on the recommendation from SeaBird, the method for calibration of Dissolved Oxygen concentration was changed from that used for 2011 and some 2012 cruises. For more information see the SeaBird Application Note #64-2, June 2012 revision. A pH sensor was attached to the CTD, but the data are not included in the files to be placed in the IOS Data Library because no field calibration information was available at the time of processing, and there are some concerns about how the sensors perform. For details on the processing see the report: 2013-13-proc.doc. --------------------------------------------------------------------------------- *CALIBRATION $TABLE: CORRECTED CHANNELS ! Name Units Fmla Pad Coefficients ! ---------------------- ------ ---- ------ ------------ Oxygen:Dissolved:SBE mL/L 10 -99 () (0 1.0752) $END !1- 2- --3--- ---4---- --5-- ---6--- --7--- --8--- ---9---- --10-- --11- -12- -13- -14- ---15--- 16 --17-- 18 --19-- ---20-- --21- 22 --23- 24 --25- 26 --27-- 28 !Bo Bo Pressu Temperat Trans Fluores PAR PAR: Salinity Oxygen Oxyge Numb Samp Temp Salinity Fl Chloro Fl Phaeo- Oxygen: Oxyge Fl Nitra Fl Silic Fl Phosph Fl !tt tt re ure: missi cence: Refere :T0:C0 : n: er_o le_ erat :Bottle ag phyll: ag Pigmen Dissolv n: ag te_ ag ate ag ate ag !~u ~u Primary vity URU: nce Dissol Disso ~bin Numb ure: ~o Extrac ~a t: ed Disso ~o plus_ ~t ~i ~p !en mb Seapoin ved: lved: _rec er Draw tt ted ct Extrac lved lv Nitri ri ca ha !ce er t SBE SBE ords le ed ted ed te te te te !-- -- ------ -------- ----- ------- ------ ------ -------- ------ ----- ---- ---- ---- -------- -- ------ -- ------ ------- ----- -- ----- -- ----- -- ------ -- *END OF HEADER 23 23 2.2 13.2160 29.6 5.027 95.7 16.8 28.3620 7.05 308.3 43 -99-99.0 -99.0000 0 -99.00 0 -99.00 -99.000 -99.0 0 -99.0 0 -99.0 0 -99.00 0 24 24 2.2 13.2206 29.8 5.177 95.0 16.8 28.3636 7.06 308.6 121 -99-99.0 -99.0000 0 -99.00 0 -99.00 -99.000 -99.0 0 -99.0 0 -99.0 0 -99.00 0 21 21 2.2 13.2013 29.7 5.361 95.9 16.8 28.3669 7.02 307.1 37 -99-99.0 -99.0000 0 -99.00 0 -99.00 -99.000 -99.0 0 -99.0 0 -99.0 0 -99.00 0 18 18 2.2 13.2303 28.9 4.971 96.2 16.8 28.3631 7.04 307.7 36 -99-99.0 -99.0000 0 -99.00 0 -99.00 -99.000 -99.0 0 -99.0 0 -99.0 0 -99.00 0 19 19 2.2 13.2177 29.1 5.305 95.9 16.8 28.3623 7.06 308.8 37 -99-99.0 -99.0000 0 -99.00 0 -99.00 -99.000 -99.0 0 -99.0 0 -99.0 0 -99.00 0 20 20 2.2 13.1850 29.7 4.860 95.7 16.8 28.3650 7.07 309.0 39 -99-99.0 -99.0000 0 -99.00 0 -99.00 -99.000 -99.0 0 -99.0 0 -99.0 0 -99.00 0 22 22 2.2 13.2243 29.9 5.311 95.6 16.8 28.3624 7.00 305.8 37 -99-99.0 -99.0000 0 -99.00 0 -99.00 -99.000 -99.0 0 -99.0 0 -99.0 0 -99.00 0 15 15 2.2 13.2381 28.4 5.410 96.0 16.8 28.3622 7.06 308.8 36 -99-99.0 -99.0000 0 -99.00 0 -99.00 -99.000 -99.0 0 -99.0 0 -99.0 0 -99.00 0 16 16 2.2 13.2175 28.4 5.154 95.9 16.8 28.3639 7.12 311.0 35 -99-99.0 -99.0000 0 -99.00 0 -99.00 -99.000 -99.0 0 -99.0 0 -99.0 0 -99.00 0 14 14 2.2 13.2441 28.7 5.056 96.3 16.8 28.3636 7.05 308.3 34 -99-99.0 -99.0000 0 -99.00 0 -99.00 -99.000 -99.0 0 -99.0 0 -99.0 0 -99.00 0 17 17 2.2 13.2131 29.2 4.908 95.8 16.8 28.3639 7.07 309.1 35 -99-99.0 -99.0000 0 -99.00 0 -99.00 -99.000 -99.0 0 -99.0 0 -99.0 0 -99.00 0 11 11 2.2 13.2880 28.5 5.211 96.1 16.8 28.3612 7.18 313.9 37 -99-99.0 -99.0000 0 -99.00 0 -99.00 -99.000 -99.0 0 -99.0 0 -99.0 0 -99.00 0 12 12 2.2 13.2474 28.6 5.208 95.9 16.8 28.3620 7.18 313.7 36 -99-99.0 -99.0000 0 -99.00 0 -99.00 -99.000 -99.0 0 -99.0 0 -99.0 0 -99.00 0 13 13 2.2 13.2113 29.5 5.319 96.1 16.8 28.3618 7.14 312.0 36 -99-99.0 -99.0000 0 -99.00 0 -99.00 -99.000 -99.0 0 -99.0 0 -99.0 0 -99.00 0 9 9 2.2 13.3088 28.0 5.096 96.3 16.8 28.3631 7.19 314.4 38 9 13.2 -99.0000 0 6.91 0 2.24 6.724 293.9 3 8.0 0 34.7 0 1.14 0 10 10 2.2 13.3005 28.2 5.154 96.2 16.8 28.3615 7.17 313.3 38 -99-99.0 -99.0000 0 -99.00 0 -99.00 -99.000 -99.0 0 -99.0 0 -99.0 0 -99.00 0 8 8 4.8 11.7402 37.5 4.290 44.8 16.8 28.5780 5.66 247.5 121 8 11.9 -99.0000 0 -99.00 0 -99.00 5.266 230.1 0 14.4 0 38.9 0 1.56 0 7 7 9.6 11.3263 50.3 1.058 13.0 16.8 28.7510 4.81 210.3 121 7 11.3 -99.0000 0 0.96 6 0.54 4.717 206.1 0 17.6 0 41.5 0 1.78 0 6 6 20.0 10.3243 46.9 0.446 2.0 16.8 29.3429 4.27 186.3 121 6 10.5 -99.0000 0 0.52 6 0.68 4.246 185.4 0 21.3 0 45.2 0 2.02 0 5 5 30.3 10.1312 44.8 0.434 0.3 16.8 29.5325 4.17 181.9 121 5 10.2 -99.0000 0 -99.00 0 -99.00 4.114 179.6 0 22.2 0 45.5 0 2.09 0 4 4 39.4 9.8071 46.8 0.338 0.0 16.8 29.6857 4.07 177.6 121 4 9.9 -99.0000 0 -99.00 0 -99.00 4.014 175.2 0 22.9 6 45.0 6 2.19 6 3 3 49.8 9.3906 51.9 0.221 0.0 16.8 29.7631 3.97 173.3 121 3 9.7 -99.0000 0 -99.00 0 -99.00 3.839 167.5 6 24.7 0 46.2 0 2.32 0 2 2 74.7 8.7208 52.2 0.155 0.0 16.8 30.4251 2.94 128.3 121 2 9.1 30.5875 0 -99.00 0 -99.00 2.518 109.8 2 28.4 0 59.9 0 2.90 0 1 1 99.9 8.6208 47.9 0.127 0.0 16.8 30.8683 1.04 45.4 121 1 9.2 -99.0000 0 -99.00 0 -99.00 1.310 57.1 0 27.3 0 69.6 0 3.48 0