*2014/11/20 09:58:23.37 *IOS HEADER VERSION 1.10 2011/10/26 2011/10/26 *FILE START TIME : UTC 2013/02/13 12:05:41.000 TIME INCREMENT : 0 0 0 0.416667E-01 0 ! (day hr min sec ms) NUMBER OF RECORDS : 2 DATA DESCRIPTION : Bottle:Rosette:Up:Stop + CTD:Up FILE TYPE : ASCII CRC : A6F87FE6 NUMBER OF CHANNELS : 17 $TABLE: CHANNELS ! No Name Units Minimum Maximum !--- --------------------------- --------------- -------------- -------------- 1 Bottle:Firing_Sequence n/a 1 2 2 Bottle_Number n/a 1 2 3 Pressure decibar 2.768 4.637 4 Temperature:Primary 'deg C (ITS90)' 5.4007 5.4011 5 Transmissivity %/metre 60.7 60.8 6 Fluorescence:URU:Seapoint mg/m^3 0.56 0.57 7 Salinity:T0:C0 PSS-78 32.6178 32.6186 8 Oxygen:Dissolved:SBE mL/L 7.176 7.182 9 Oxygen:Dissolved:SBE umol/kg 312.3 312.6 10 Number_of_bin_records n/a 121 121 11 Sample_Number n/a 311 312 12 Temperature:Draw 'deg C (ITS90)' 5.8 5.8 13 Salinity:Bottle PSS-78 32.6191 32.6201 14 Flag:Salinity:Bottle n/a 15 Oxygen:Dissolved mL/L 7.153 7.17 16 Oxygen:Dissolved umol/kg 311.3307 312.0705 17 Flag:Oxygen:Dissolved n/a $END $TABLE: CHANNEL DETAIL ! No Pad Start Width Format Type Decimal_Places !--- ---- ----- ----- ------ ---- -------------- 1 -99 ' ' 3 I I 0 2 -99 ' ' 3 I I 0 3 -99 ' ' 7 F ' ' 1 4 -99 ' ' 9 F ' ' 4 5 -99 ' ' 6 F ' ' 1 6 -99 ' ' 8 F ' ' 3 7 -99 ' ' 9 F ' ' 4 8 -99 ' ' 7 F ' ' 2 9 -99 ' ' 6 F ' ' 1 10 ' ' ' ' 5 I I 0 11 -99 ' ' 5 I I 0 12 -99 ' ' 5 F R4 1 13 -99 ' ' 9 F R4 4 14 0 ' ' 3 NQ C ' ' 15 -99 ' ' 8 F R4 3 16 -99 ' ' 6 F ' ' 1 17 0 ' ' 3 NQ C ' ' $END $REMARKS Flag channels initialized with zeros. Non-zero values have the following significance: -------------------------------------------------------------------------------------- 1 = Sample for this measurement was collected but not analyzed. Sample lost. 2 = Acceptable Measurement 3 = Questionable Measurement (Probably Good) 4 = Poor Measurement (Probably Bad) 5 = Measurement Not Reported (Bad) 6 = Mean of replicate measurements 7 = Manual chromatographic peak measurement 8 = Irregular digital chromatographic peak integration 9 = Sample was planned for this measurement from this bottle but was not collected -------------------------------------------------------------------------------------- $END *ADMINISTRATION MISSION : 2013-01 AGENCY : IOS, Ocean Sciences Division, Sidney, B.C. COUNTRY : Canada PROJECT : Line P SCIENTIST : Robert M. PLATFORM : John P. Tully *LOCATION GEOGRAPHIC AREA : North-East Pacific STATION : PA-006 EVENT NUMBER : 56 LATITUDE : 50 2.29000 N ! (deg min) LONGITUDE : 144 55.81000 W ! (deg min) WATER DEPTH : 4211 *INSTRUMENT TYPE : Sea-Bird CTD MODEL : SBE-911plus SERIAL NUMBER : 0585 LOCATION : Mid-ship ! custom item $TABLE: SENSORS ! Name Abs Depth Serial No ! ----------------------------------- -------------- ---------- Temperature ' ' 4054 Conductivity ' ' 3321 'Pressure:Digiquartz with TC' ' ' 77511 Temperature:2 ' ' 4700 Conductivity:2 ' ' 1766 Fluorometer:Seapoint ' ' ' ' PAR/Irradiance:Biospherical/Licor ' ' 4601 'Oxygen:SBE 43' ' ' 1438 'Transmissometer:WET Labs C-Star' ' ' 1396 Altimeter ' ' 1204 Fluorometer:Seapoint:2 ' ' 2228 $END $REMARKS SOFTWARE VERSION SEASAVE V 7.22.4 $END *HISTORY $TABLE: PROGRAMS ! Name Vers Date Time Recs In Recs Out ! ------------------------ ------ ---------- -------- --------- --------- SBE_IOS 3.2 2013/04/30 13:01:14 242 242 CLEAN 5.1 2013/04/30 13:01:37 ? ? ADDSAMP 3.5 2013/04/30 15:56:02 242 242 BINAVE 4.1.1 2013/04/30 15:56:40 242 2 MERGE 3.5 2013/05/02 09:42:25 2 2 CLEAN 5.1 2013/05/02 09:42:30 2 2 CALIB 11.7 2013/05/30 08:33:58 2 2 SORT 3.6 2013/05/30 10:20:58 2 2 REMOVECH 8.1.1 2013/05/30 11:41:42 2 2 CHGUNITS 3.0 2013/05/30 11:43:28 2 2 CHGUNITS 3.0 2013/05/30 11:44:27 2 2 REORDER 1.3 2013/05/30 11:45:18 ? ? HDREDIT2 2.6 2013/07/09 15:53:36 ? ? HDREDIT2 2.6 2013/12/13 13:26:39 ? ? CHANGE_CTD_CHANNEL_NAMES 1.0 2014/01/06 14:09:32 2 2 CHANGE_FLAGS 2.0 2014/11/20 09:58:23 2 2 $END $REMARKS -CLEAN functions: 2013/04/30 13:01:24 20 Set event to last 4 characters of file name -The following ADDSAMP parameters were used: Sample Number Lookup File: P:\Cruise_Data_Processing\2013-01\Processing\hydro\addsamp.csv Bottle Channel Name: Bottle_Number -The following BINAVE parameters were used: Bin channel = Bottle_Number Averaging interval = 1.00 Minimum bin value = 0.000 Average value was used Interpolated values were NOT used for empty bins Channel 'NUMBER_OF_BIN_RECORDS' was added to file. -The following MERGE parameters were used: 2013/05/02 09:42:25 Merge Channel: Bottle_Number Merge Scheme Used: Add Secondary to Primary Overlap Scheme Used: Keep Primary Primary Channels to Include: ALL Secondary Channels to Include: Event_Number, Bottle:Position, Salinity:Bottle, Flag:Salinity:Bottle, Chlorophyll:Extracted, Flag:Chlorophyll:Extracted, Phaeo-Pigment:Extracted, Oxygen:Dissolved, Flag:Oxygen:Dissolved, Temperature:Draw, Nitrate_plus_Nitrite, Flag:Nitrate_plus_Nitrite, Silicate, Flag:Silicate, Phosphate, Flag:Phosphate, Ammonium, Flag:Ammonium, pH, Flag:pH, Dimethyl_Sulphide, Flag:Dimethyl_Sulphide Primary file : P:\Cruise_Data_Processing\2013-01\Processing\hydro\2013-01-0056.samavg Secondary file: P:\Cruise_Data_Processing\2013-01\Processing\hydro\2013-01-0056.mrgcln1s -SORT parameters: 2013/05/02 09:42:14 Sorted in ascending order of channel Bottle_Number -CLEAN functions: 2013/05/02 09:42:29 20 Reset #RECS, MIN & MAX values in header. Remove Sea-Bird comments from the header. Remove remark heading: "Comments from secondary" -CALIB parameters: 2013/05/30 08:33:58 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = P:\Cruise_Data_Processing\2013-01\Processing\doc\2013-01-recal1.ccf Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 18 Oxygen:Dissolved:SBE mL/L 10 0.1890000E-01 0.1066400E+01 -SORT parameters: 2013/05/30 10:20:58 Sorted in ascending order of channel Pressure -REMOVECH 2013/05/30 11:41:42 The following CHANNEL(S) were removed: Scan_Number Temperature:Secondary [deg C (ITS90)] Conductivity:Primary [S/m] Conductivity:Secondary [S/m] Fluorescence:Seapoint [mg/m^3] Oxygen:Voltage:SBE [volts] PAR [uE/m^2/sec] Altimeter [metres] Status:Pump Descent_Rate [m/s] Salinity:T1:C1 [PSS-78] Flag -CHANGE units: 'Oxygen:Dissolved:SBE' changed from mL/L to umol/kg -CHANGE units: 'Oxygen:Dissolved' changed from mL/L to umol/kg -HEADER EDITS: 2013/07/09 15:53:36 Applied edit header: P:\Cruise_Data_Processing\2013-01\Processing\doc\HYDRO\2013-01-bot-hdr.txt Channel 1: Bottle:Firing_Sequence [n/a] Name: Bottle_Number ==> Bottle:Firing_Sequence Channel 2: Bottle_Number [n/a] Name: Bottle:Position ==> Bottle_Number Channel 3: Pressure [decibar] Units: dbars ==> decibar Format: F10.3 ==> F7.1 Channel 6: Fluorescence:URU:Seapoint [mg/m^3] Name: Fluorescence:Seapoint:2 ==> Fluorescence:URU:Seapoint Channel 7: Salinity:Practical:T0:C0 [PSS-78] Name: Salinity:T0:C0 ==> Salinity:Practical:T0:C0 Channel 8: Oxygen:Dissolved:SBE [mL/L] Format: F8.3 ==> F7.2 Channel 13: Salinity:Bottle [PSS-78] Units: ==> PSS-78 Channel 14: Flag:Salinity:Bottle [n/a] Units: ==> n/a Channel 15: Oxygen:Dissolved [mL/L] Units: ==> mL/L Channel 17: Flag:Oxygen:Dissolved [n/a] Units: ==> n/a -HEADER EDITS: 2013/12/13 13:26:39 Channel 12: Temperature:Draw [deg C (ITS90)] Units: ==> deg C (ITS90) Format: F7.2 ==> F5.1 $END *COMMENTS Sample_Number 311: OXY: Replicate outliers. Analysis methods: ----------------- Chlorophyll samples were filtered onto 25mm GF/F filters and stored in glass scintillation vials at -20C prior to analysis. Samples were extracted in 90% acetone at -20C for 24 hours and analyzed on a Turner 10AU fluorometer which is calibrated annually with commercially pure chlorophyll a (Sigma). Fluorescence readings taken before and after acidification were used to calculate chlorophyll and phaeopigment concentrations (Holm-Hansen et al 1965). Chlorophyll samples were analyzed at IOS in a controlled temperature lab. The average of two samples is reported. Variability is assessed as the CV% (std dev / mean*100). For details see worksheet “Precision” in file QF2013-01CHL*.xls. Phaeopigment data are provided for information only and no quality flags are assigned to them. Oxygen samples were analyzed at sea on an automated Winkler titration system (Brinkmann Dosimat model 665 for titrations, Dosimat model 865 for dispensing standards and a PC950 Colorimeter controlled by AutoOxy software V3.4) with modifications based on Carpenter (1965) and adhering to WOCE protocols (Culberson 1991). For details including a duplicate analysis, see document QF2013-01OXY*.xls. Salinity samples were collected in 200 mL type ll glass bottles with disposable plastic inserts and screw caps supplied by Ocean Scientific International Limited. They were analyzed in a temperature-controlled lab on a Guildline 8400B Salinometer (S/N 68572) standardized with IAPSO standard seawater within 2 to 21 days after collection. Full details including a duplicate analysis are in file QF2013-01SAL*.xls. Nutrient samples were collected in plastic tubes and quick frozen in aluminum blocks stored in -20 freezer. One set of samples from 400m and deeper (to be used for silicate analysis) was collected and stored at 4C in the dark. All samples were returned to IOS for analysis. THey were analyzed using an Astoria analyzer following methods described in Barwell-Clarke and Whitney (1996). For raw data, precision and duplicate details see worksheet QF2013-01nuts*.xls. The minimum detectable level for DMS is 0.10 nM, so “0” values should be interpreted as <0.10. For details on the collection and analysis of the DMS data see file 2013-01 DMS Report.doc and for data see DMS summary (2013-01 data)*.xls. References: 1. Barwell-Clarke, J. and Whitney, F. 1996. Institute of Ocean Sciences Nutrient Methods and Analysis. Canadian Technical Report of Hydrography and Ocean Sciences, No. 182, 43 pp. 2. Carpenter, J.H. 1965. The Chesapeake Bay Institute Technique for the Winkler Dissolved Oxygen Method. Limmnol. & Oceanogr., 10: 141-143. 3. Culberson, C.H. 1991. Dissolved oxygen. WOCE Hydrographic Programme Operations and Methods (July 1991). 15pp. 4. Holm-Hansen, O., Lorenzen, C.J., Holmes, R.W., and Strickland J.D.H. 1965. Fluorometric Determination of Chlorophyll. J.du Cons. Intl. Pour l’Epl. De la Mer. 30:3-15. * For PDF versions of these papers see folder \\Cruise_Data\DOCUMENTS\Analysis Reference Papers Data Processing Notes: ---------------------- Transmissivity, fluorescence and PAR data are nominal and unedited except that some records were removed in editing temperature and salinity. For details on how the transmissivity calibration parameters were calculated see the document in folder "\cruise_data\documents\transmissivity". SBE DO calibration was done using the method described in the SeaBird Application NOte #64-2 with a modification allowing a small offset. For further processing details see the processing report 2013-01-proc.doc. *CALIBRATION $TABLE: CORRECTED CHANNELS ! Name Units Fmla Pad Coefficients ! ---------------------- ------ ---- ------ ------------ Oxygen:Dissolved:SBE mL/L 10 -99 () (0.189E-01 1.0664) $END !1- 2- --3--- ---4---- --5-- ---6--- ---7---- --8--- --9-- -10- -11- -12- ---13--- 14 ---15-- --16- 17 !Bo Bo Pressu Temperat Trans Fluores Salinity Oxygen Oxyge Numb Samp Temp Salinity Fl Oxygen: Oxyge Fl !tt tt re ure: missi cence: :T0:C0 : n: er_o le_ erat :Bottle ag Dissolv n: ag !~u ~u Primary vity URU: Dissol Disso ~bin Numb ure: ~o ed Disso ~o !en mb Seapoin ved: lved: _rec er Draw tt lved lv !ce er t SBE SBE ords le ed !-- -- ------ -------- ----- ------- -------- ------ ----- ---- ---- ---- -------- -- ------- ----- -- *END OF HEADER 2 2 2.8 5.4011 60.7 0.560 32.6178 7.18 312.6 121 312 5.8 32.6191 0 7.153 311.3 6 1 1 4.6 5.4007 60.8 0.570 32.6186 7.18 312.3 121 311 5.8 32.6201 0 7.170 312.1 36