*2013/12/16 15:38:53.70 *IOS HEADER VERSION 1.10 2011/10/26 2011/10/26 *FILE START TIME : UTC 2012/10/10 16:02:36.000 TIME INCREMENT : 0 0 0 0.416667E-01 0 ! (day hr min sec ms) NUMBER OF RECORDS : 88 DATA DESCRIPTION : CTD FILE TYPE : ASCII CRC : 52993EBD NUMBER OF CHANNELS : 7 $TABLE: CHANNELS ! No Name Units Minimum Maximum !--- -------------------------- --------------- -------------- -------------- 1 Pressure decibar 4.195 90.947 2 Temperature:Secondary 'deg C (ITS90)' 7.7358 9.8361 3 Fluorescence:URU:Wetlabs mg/m^3 0.171 1.019 4 Salinity:T1:C1 PSS-78 31.3266 33.2248 5 Oxygen:Dissolved:SBE mL/L 3.1 4.706 6 Oxygen:Dissolved:SBE umol/kg 134.9959 205.1423 7 Number_of_bin_records n/a 9 46 $END $TABLE: CHANNEL DETAIL ! No Pad Start Width Format Type Decimal_Places !--- ---- ----- ----- ------ ---- -------------- 1 -99 ' ' 7 F ' ' 1 2 -99 ' ' 9 F ' ' 4 3 -99 ' ' 8 F ' ' 3 4 -99 ' ' 9 F ' ' 4 5 -99 ' ' 7 F ' ' 2 6 -99 ' ' 6 F ' ' 1 7 ' ' ' ' 5 I I 0 $END $REMARKS This file converted from Sea-Bird file: P:\Cruise_Data_Processing\2012-67\Pro $END *ADMINISTRATION MISSION : 2012-67 AGENCY : PBS, Salmon And Freshwater Ecosystems, Nanaimo, B.C. COUNTRY : Canada PROJECT : High Seas Salmon SCIENTIST : Morris J. PLATFORM : W.E. Ricker *LOCATION GEOGRAPHIC AREA : BC Coast STATION : JF 06 EVENT NUMBER : 4 LATITUDE : 48 33.35000 N ! (deg min) LONGITUDE : 124 42.30000 W ! (deg min) WATER DEPTH : 101 *INSTRUMENT TYPE : Sea-Bird CTD MODEL : SBE-911plus SERIAL NUMBER : 0443 $REMARKS SOFTWARE VERSION SEASAVE V 7.21D $END *HISTORY $TABLE: PROGRAMS ! Name Vers Date Time Recs In Recs Out ! ------------------------ ------ ---------- -------- --------- --------- SBE_IOS 3.1.2 2013/03/30 16:33:09 6451 6451 CLEAN 5.1 2013/03/30 16:40:32 6451 6451 SHIFTDAT 3.4 2013/04/02 09:21:17 6451 6451 SHIFTDAT 3.4 2013/04/02 11:02:53 6451 6451 SHIFTDAT 3.4 2013/04/02 11:09:06 6451 6451 SHIFTDAT 3.4 2013/04/02 13:33:06 6451 6451 DELETE 6.3 2013/04/02 13:44:50 6451 3029 CTDEDIT 4.61 2013/04/08 15:49:29 3029 3010 CALIB 11.7 2013/04/12 14:13:16 3010 3010 FILTERS 4.3 2013/04/12 14:24:30 3010 3010 BINAVE 4.1.1 2013/04/12 14:27:09 3010 88 REMOVECH 8.1.1 2013/04/12 14:56:35 88 88 CHGUNITS 3.0 2013/04/12 14:57:06 88 88 REORDER 1.3 2013/04/12 15:11:06 ? ? HDREDIT2 2.6 2013/04/12 15:13:39 ? ? CHANGE_CTD_CHANNEL_NAMES 1.0 2013/12/16 15:38:53 88 88 $END $REMARKS -CLEAN functions: 2013/03/30 16:40:30 20 Interpolation by Record Number, in Pressure Set event to last 4 characters of file name -The following SHIFT parameters were used. Shift Channel: Fluorescence:Wetlabs:ECO-AFL [mg/m^3] # of Records to Advance (-ve for Delay): At REC# 0 Shift= 6.00 -The following SHIFT parameters were used. Shift Channel: Conductivity:Primary [S/m] # of Records to Advance (-ve for Delay): At REC# 0 Shift= -0.50 Salinity was recalculated after shift -The following SHIFT parameters were used. Shift Channel: Conductivity:Secondary [S/m] # of Records to Advance (-ve for Delay): At REC# 0 Shift= -0.80 Salinity was recalculated after shift -The following SHIFT parameters were used. Shift Channel: pH:SBE [pH Units] # of Records to Advance (-ve for Delay): At REC# 0 Shift= 48.00 -The following DELETE parameters were used: Surface Record Removal: Last Press Min Maximum Surface Pressure (relative): 10.00 Surface Swell Pressure Tolerance: 1.00 Pressure filtered over width: 15 Swells deleted. Warning message if pressure difference of 2.00 Drop rates < 0.30m/s (calculated over 11 points) will be deleted. Drop rate applies in the range 10.00 to 81.52 dbars Sample interval (from FILE section of header) = 0.042 seconds. -CTDEDIT 2013/04/08 15:49:29 19 records were deleted in this editing session. 22 changes in channel Salinity:T1:C1 -CALIB parameters: 2013/04/12 14:13:16 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = P:\Cruise_Data_Processing\2012-67\Processing\doc\2012-67-recal1.ccf Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 14 Oxygen:Dissolved:SBE mL/L 10 0.4800000E-01 0.1000000E+01 -The following FILTER parameters were used. Median filter was used. Filter width = 11 The following channel(s) were filtered. Fluorescence:Wetlabs:ECO-AFL Fluorescence:Seapoint -The following BINAVE parameters were used: Bin channel = Pressure Averaging interval = 1.00 Minimum bin value = 0.000 Average value was used Interpolated values were NOT used for empty bins Channel 'NUMBER_OF_BIN_RECORDS' was added to file. -REMOVECH 2013/04/12 14:56:35 The following CHANNEL(S) were removed: Scan_Number Temperature:Primary [deg C (ITS90)] Conductivity:Primary [S/m] Conductivity:Secondary [S/m] Oxygen:Voltage:SBE [volts] pH:SBE [pH Units] Descent_Rate [m/s] Status:Pump Salinity:T0:C0 [PSS-78] Flag -CHANGE units: 'Oxygen:Dissolved:SBE [mL/L]' changed from mL/L to umol/kg -HEADER EDITS: 2013/04/12 15:13:39 Applied edit header: P:\Cruise_Data_Processing\2012-67\Processing\doc\2012-67-HDR.TXT Channel 1: Pressure [decibar] Units: dbars ==> decibar Format: F10.3 ==> F7.1 Channel 3: Fluorescence:URU:Wetlabs [mg/m^3] Name: Fluorescence:Wetlabs:ECO-AFL ==> Fluorescence:URU:Wetlabs Channel 5: Oxygen:Dissolved:SBE [mL/L] Format: F8.3 ==> F7.2 Channel 4: Salinity:Practical:T1:C1 [PSS-78] Name: Salinity:T1:C1 ==> Salinity:Practical:T1:C1 $END *COMMENTS SBE HEADER Sea-Bird SBE 9 Data File: FileName = C:\Data\2012-67\2012-67.004.hex Software Version Seasave V 7.21d Temperature SN = 2106 Conductivity SN = 1764 Number of Bytes Per Scan = 37 Number of Voltage Words = 4 Number of Scans Averaged by the Deck Unit = 1 System UpLoad Time = Oct 10 2012 09:03:08 NMEA Latitude = 48 33.35 N NMEA Longitude = 124 42.30 W NMEA UTC (Time) = Oct 10 2012 16:02:36 Store Lat/Lon Data = Append to Every Scan SBE 11plus V 5.1e number of scans to average = 1 pressure baud rate = 9600 NMEA baud rate = 4800 Latitude/Longitude added to scan GPIB address = 1 advance primary conductivity 0.073 seconds advance secondary conductivity 0.073 seconds S> Ricker 2012-67 Station: JF 06 Depth(m): 101 System UTC = Oct 10 2012 08:03:08 # nquan = 15 # nvalues = 6451 # units = specified # name 0 = scan: Scan Count # name 1 = prDM: Pressure, Digiquartz [db] # name 2 = t090C: Temperature [ITS-90, deg C] # name 3 = t190C: Temperature, 2 [ITS-90, deg C] # name 4 = c0S/m: Conductivity [S/m] # name 5 = c1S/m: Conductivity, 2 [S/m] # name 6 = sbeox0V: Oxygen raw, SBE 43 [V] # name 7 = flECO-AFL: Fluorescence, WET Labs ECO-AFL/FL [mg/m^3] # name 8 = ph: pH # name 9 = dz/dtM: Descent Rate [m/s] # name 10 = pumps: Pump Status # name 11 = sal00: Salinity, Practical [PSU] # name 12 = sal11: Salinity, Practical, 2 [PSU] # name 13 = sbeox0ML/L: Oxygen, SBE 43 [ml/l], WS = 2 # name 14 = flag: flag # span 0 = 1, 6451 # span 1 = 2.793, 91.523 # span 2 = 7.7308, 9.8380 # span 3 = 7.7309, 9.8417 # span 4 = 3.416241, 3.448955 # span 5 = 3.415946, 3.449120 # span 6 = 1.4248, 1.9561 # span 7 = 0.0798, 4.6195 # span 8 = 7.780, 7.955 # span 9 = -1.329, 1.299 # span 10 = 0, 1 # span 11 = 31.3169, 33.2474 # span 12 = 31.3183, 33.2473 # span 13 = 3.04411, 4.67014 # span 14 = 0.0000e+00, 0.0000e+00 # interval = seconds: 0.0416667 # start_time = Oct 10 2012 16:02:36 [NMEA time, header] # bad_flag = -9.990e-29 # # # # # 2106 # 01-Apr-11 # 1 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.000 # 4.14706003e-003 # 6.31100076e-004 # 2.13431760e-005 # 2.18854475e-006 # 1000.000 # 1.00000000 # 0.0000 # # # # # # 1764 # 29-Mar-11 # 1 # # 0.0000 # 2000.0000 # 0 # # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.0 # -9.57000000e-008 # # # -4.15464915e+000 # 4.87579437e-001 # -6.56660246e-004 # 5.55755549e-005 # -9.57000000e-008 # 3.2500e-006 # # 0.00000000e+000 # # 1.00000000 # 0.00000 # # # # # # 63507 # 12-Apr-11 # -4.435468e+004 # -1.845750e-001 # 1.192740e-002 # 3.979900e-002 # 0.000000e+000 # 2.993572e+001 # -3.336200e-004 # 3.759160e-006 # 1.565300e-009 # 0.99986626 # 5.62145 # 0.000000e+000 # 1.283280e-002 # -9.295010e+000 # # # # # # 2710 # 01-Apr-11 # 1 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.000 # 4.36717391e-003 # 6.46683268e-004 # 2.34981097e-005 # 2.22352352e-006 # 1000.000 # 1.00000000 # 0.0000 # # # # # # 2128 # 29-Mar-11 # 1 # # 0.0000 # 2000.0000 # 0 # # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.0 # -9.57000000e-008 # # # -1.01926507e+001 # 1.46093888e+000 # -2.51557628e-003 # 2.74924248e-004 # -9.57000000e-008 # 3.2500e-006 # # 0.00000000e+000 # # 1.00000000 # 0.00000 # # # # # # # # # # # # # # # # # # 0851 # 29-May-2012 # 4.5412 # 2.4967 # # # # # # # # # 0997 # 23-Apr-11p # 1 # # # 0.0000 # 0.0000e+000 # 0.0000 # 0.00e+000 # 0.0000 # 0.0 # # # # 4.8010e-001 # -0.4816 # 1.4264e-003 # 2.8936e-005 # -9.0212e-007 # 2.5826e+000 # 1.92630e-004 # -4.64800e-002 # 3.6000e-002 # 1.5600 #

-3.3000e-002

#

5.0000e+003

#

1.4500e+003

# # # # # # # 2216 # June 2012 # 1.30000000e+001 # # 0.0427 # # # # datcnv_date = Mar 30 2013 14:04:17, 7.21d [datcnv_vars = 11] # datcnv_in = P:\Cruise_Data_Processing\2012-67\RAW\CTD\2012-67-0004.hex P:\Crui se_Data_Processing\2012-67\Processing\doc\2012-67-ctd.xmlcon # datcnv_skipover = 0 # datcnv_ox_hysteresis_correction = yes # wildedit_date = Mar 30 2013 14:15:06, 7.21d # wildedit_in = P:\Cruise_Data_Processing\2012-67\Processing\convert\2012-67-000 4.cnv # wildedit_pass1_nstd = 2.0 # wildedit_pass2_nstd = 5.0 # wildedit_pass2_mindelta = 0.000e+000 # wildedit_npoint = 50 # wildedit_vars = prDM t090C t190C c0S/m c1S/m # wildedit_excl_bad_scans = yes # alignctd_date = Mar 30 2013 14:53:54, 7.21d # alignctd_in = P:\Cruise_Data_Processing\2012-67\Processing\wildedit\2012-67-00 04.cnv # alignctd_adv = sbeox0V 4.000 # celltm_date = Mar 30 2013 15:44:35, 7.21d # celltm_in = P:\Cruise_Data_Processing\2012-67\Processing\align\2012-67-0004.cn v # celltm_alpha = 0.0300, 0.0300 # celltm_tau = 9.0000, 9.0000 # celltm_temp_sensor_use_for_cond = primary, secondary # Derive_date = Mar 30 2013 15:48:08, 7.21d [derive_vars = 3] # Derive_in = P:\Cruise_Data_Processing\2012-67\Processing\celltm\2012-67-0004.c nv P:\Cruise_Data_Processing\2012-67\Processing\doc\2012-67-ctd.xmlcon # derive_time_window_docdt = seconds: 2 # derive_ox_tau_correction = yes # file_type = ascii END* CTDEDIT was used to remove some near-surface records; salinity was cleaned. Data Processing Notes: ---------------------- Transmissivity and fluorescence are nominal and unedited except that some records were removed in editing temperature and salinity. Dissolved Oxygen data were recalibrated by adjusting the values of SOC and OFFSET in the configuration file, based on the results of cruise 2012-01, because there was no calibration sampling during this cruise. Since it is likely that some drift had occurred since February 2012, these data must be considered less reliable than usual. A further correction was based on cruise 2012-49 during which negative DO values were found in anoxic water. Salinity is considered +/-0.002 based primarily on a post-cruise calibration. A pH sensor was attached to the CTD, but the data are not included in the files to be placed in the IOS Data Library because no field calibration information was available at the time of processing, and there are some concerns about how the sensors perform. For details on the processing see processing report: 2012-67-proc.doc. *CALIBRATION $TABLE: CORRECTED CHANNELS ! Name Units Fmla Pad Coefficients ! ---------------------- ------ ---- ------ ------------ Oxygen:Dissolved:SBE mL/L 10 -99 () (0.48E-01 1) $END !--1--- ---2---- ---3--- ---4---- --5--- --6-- -7-- !Pressu Temperat Fluores Salinity Oxygen Oxyge Numb !re ure: cence: :T1:C1 : n: er_o ! Secondar URU: Dissol Disso ~bin ! y Wetlabs ved: lved: _rec ! SBE SBE ords !------ -------- ------- -------- ------ ----- ---- *END OF HEADER 4.2 9.8224 0.880 31.3282 4.71 205.1 13 4.8 9.8205 0.927 31.3268 4.71 205.1 9 6.0 9.8197 1.007 31.3266 4.70 204.9 35 7.0 9.8210 1.019 31.3268 4.70 204.9 34 8.0 9.8153 0.917 31.3369 4.70 204.9 34 9.0 9.8107 0.766 31.3463 4.70 205.1 41 10.0 9.8164 0.901 31.3500 4.70 205.1 33 11.0 9.8206 0.812 31.3524 4.69 204.5 31 12.0 9.8252 0.802 31.3551 4.70 204.7 34 13.0 9.8286 0.775 31.3576 4.70 204.8 36 14.0 9.8300 0.756 31.3595 4.69 204.6 37 15.0 9.8325 0.738 31.3612 4.68 204.2 41 16.0 9.8361 0.720 31.3635 4.63 201.9 33 17.0 9.8347 0.738 31.3677 4.56 198.9 29 18.0 9.8162 0.686 31.3782 4.48 195.4 33 19.0 9.7940 0.799 31.3903 4.38 191.1 36 20.0 9.7713 0.702 31.4005 4.28 186.5 32 21.0 9.7218 0.827 31.4161 4.13 179.9 40 22.0 9.6610 0.785 31.4410 3.93 171.3 41 23.0 9.5231 0.713 31.5133 3.85 167.8 34 24.0 9.4330 0.692 31.5869 3.87 168.6 31 25.0 9.4222 0.657 31.6337 3.90 170.1 36 26.0 9.4287 0.643 31.6682 3.92 170.7 36 27.0 9.4251 0.826 31.6834 3.91 170.4 30 28.0 9.4197 0.683 31.6921 3.91 170.4 33 29.0 9.4030 0.705 31.7174 3.91 170.4 39 30.0 9.3978 0.679 31.7249 3.89 169.5 37 31.0 9.3865 0.715 31.7302 3.85 167.9 35 32.0 9.3747 0.736 31.7390 3.78 164.7 35 33.0 9.3240 0.651 31.7730 3.75 163.4 32 34.0 9.2936 0.595 31.7932 3.74 163.0 32 35.0 9.2814 0.546 31.8057 3.73 162.5 32 36.0 9.2742 0.567 31.8115 3.70 161.4 40 37.0 9.2603 0.542 31.8206 3.68 160.5 36 38.0 9.2459 0.577 31.8315 3.67 159.9 31 39.0 9.2346 0.556 31.8435 3.66 159.3 37 40.0 9.2219 0.553 31.8547 3.62 157.7 37 41.0 9.2108 0.576 31.8632 3.57 155.7 29 42.0 9.1777 0.622 31.8889 3.54 154.1 29 43.0 9.1442 0.475 31.9247 3.48 151.8 34 44.0 9.0817 0.402 31.9811 3.48 151.5 37 45.0 9.0419 0.483 32.0397 3.44 150.0 41 46.0 9.0076 0.447 32.0726 3.39 147.5 44 47.0 8.9837 0.434 32.0883 3.33 144.9 30 48.0 8.9411 0.494 32.1177 3.30 143.9 28 49.0 8.9234 0.497 32.1319 3.28 143.0 33 50.0 8.9018 0.466 32.1530 3.26 142.0 33 51.0 8.8713 0.502 32.1860 3.24 140.9 32 52.0 8.8469 0.459 32.2125 3.22 140.2 27 53.0 8.8106 0.394 32.2557 3.21 139.9 30 54.0 8.7987 0.403 32.2709 3.21 139.9 39 55.0 8.7947 0.390 32.2799 3.21 140.0 46 56.0 8.7922 0.379 32.2856 3.21 139.8 29 57.0 8.7912 0.348 32.2890 3.21 139.8 29 58.0 8.7917 0.346 32.2896 3.21 139.9 39 59.0 8.7919 0.365 32.2899 3.22 140.1 35 60.0 8.7922 0.337 32.2911 3.21 139.9 26 61.0 8.7920 0.374 32.2927 3.21 139.8 29 62.0 8.7899 0.416 32.2963 3.21 139.6 44 62.9 8.7852 0.329 32.3037 3.19 139.0 44 64.0 8.7616 0.403 32.3331 3.17 138.1 29 65.0 8.7581 0.388 32.3370 3.16 137.4 25 66.0 8.7371 0.349 32.3597 3.15 137.1 28 67.0 8.7222 0.343 32.3756 3.14 136.7 33 68.0 8.7066 0.398 32.3943 3.14 136.6 45 69.0 8.7026 0.372 32.3998 3.13 136.3 41 70.0 8.7022 0.415 32.4008 3.13 136.2 34 71.0 8.6945 0.401 32.4127 3.12 135.7 33 72.0 8.6743 0.395 32.4392 3.10 135.0 35 73.0 8.6454 0.388 32.4756 3.12 135.9 33 74.0 8.6014 0.355 32.5278 3.24 141.2 30 75.0 8.5288 0.410 32.6057 3.37 146.6 30 76.0 8.4686 0.495 32.6701 3.40 148.0 30 77.0 8.4529 0.502 32.6864 3.42 148.9 36 78.0 8.4560 0.494 32.6838 3.50 152.6 37 79.0 8.4231 0.477 32.7177 3.61 157.1 37 80.0 8.3880 0.559 32.7411 3.66 159.4 38 81.0 8.3745 0.609 32.7480 3.73 162.6 42 82.0 8.3518 0.542 32.7557 4.00 174.4 33 83.0 8.2417 0.590 32.8065 4.30 187.4 27 84.0 8.1257 0.615 32.8623 4.51 196.2 28 85.0 8.0026 0.630 32.9006 4.53 197.0 35 86.0 7.8512 0.508 32.9310 4.42 192.3 36 87.0 7.8151 0.397 32.9749 4.30 187.2 35 88.0 7.7498 0.312 33.0310 4.10 178.5 37 89.0 7.7639 0.267 33.0885 3.92 170.5 37 90.0 7.7430 0.226 33.1679 3.76 163.5 35 90.9 7.7358 0.171 33.2248 3.71 161.6 34