*2013/12/16 15:38:53.67 *IOS HEADER VERSION 1.10 2011/10/26 2011/10/26 *FILE START TIME : UTC 2012/10/10 14:09:21.000 TIME INCREMENT : 0 0 0 0.416667E-01 0 ! (day hr min sec ms) NUMBER OF RECORDS : 72 DATA DESCRIPTION : CTD FILE TYPE : ASCII CRC : 650E7B9B NUMBER OF CHANNELS : 7 $TABLE: CHANNELS ! No Name Units Minimum Maximum !--- -------------------------- --------------- -------------- -------------- 1 Pressure decibar 6.046 76.757 2 Temperature:Secondary 'deg C (ITS90)' 7.4672 9.7932 3 Fluorescence:URU:Wetlabs mg/m^3 0.521 1.238 4 Salinity:T1:C1 PSS-78 31.5392 33.4655 5 Oxygen:Dissolved:SBE mL/L 1.812 4.643 6 Oxygen:Dissolved:SBE umol/kg 78.83192 202.3511 7 Number_of_bin_records n/a 10 54 $END $TABLE: CHANNEL DETAIL ! No Pad Start Width Format Type Decimal_Places !--- ---- ----- ----- ------ ---- -------------- 1 -99 ' ' 7 F ' ' 1 2 -99 ' ' 9 F ' ' 4 3 -99 ' ' 8 F ' ' 3 4 -99 ' ' 9 F ' ' 4 5 -99 ' ' 7 F ' ' 2 6 -99 ' ' 6 F ' ' 1 7 ' ' ' ' 5 I I 0 $END $REMARKS This file converted from Sea-Bird file: P:\Cruise_Data_Processing\2012-67\Pro $END *ADMINISTRATION MISSION : 2012-67 AGENCY : PBS, Salmon And Freshwater Ecosystems, Nanaimo, B.C. COUNTRY : Canada PROJECT : High Seas Salmon SCIENTIST : Morris J. PLATFORM : W.E. Ricker *LOCATION GEOGRAPHIC AREA : BC Coast STATION : JF 05 EVENT NUMBER : 1 LATITUDE : 48 31.28000 N ! (deg min) LONGITUDE : 124 29.31000 W ! (deg min) WATER DEPTH : 86 *INSTRUMENT TYPE : Sea-Bird CTD MODEL : SBE-911plus SERIAL NUMBER : 0443 $REMARKS SOFTWARE VERSION SEASAVE V 7.21D $END *HISTORY $TABLE: PROGRAMS ! Name Vers Date Time Recs In Recs Out ! ------------------------ ------ ---------- -------- --------- --------- SBE_IOS 3.1.2 2013/03/30 16:33:08 3447 3447 CLEAN 5.1 2013/03/30 16:40:30 3447 3447 SHIFTDAT 3.4 2013/04/02 09:21:16 3447 3447 SHIFTDAT 3.4 2013/04/02 11:02:52 3447 3447 SHIFTDAT 3.4 2013/04/02 11:09:04 3447 3447 SHIFTDAT 3.4 2013/04/02 13:33:04 3447 3447 REVERSE 2.0 2013/04/02 13:37:50 3447 3447 DELETE 6.3 2013/04/02 13:50:07 3447 2598 CTDEDIT 4.61 2013/04/08 15:47:00 2598 2512 CALIB 11.7 2013/04/12 14:13:15 2512 2512 FILTERS 4.3 2013/04/12 14:24:29 2512 2512 BINAVE 4.1.1 2013/04/12 14:27:08 2512 72 REMOVECH 8.1.1 2013/04/12 14:56:35 72 72 CHGUNITS 3.0 2013/04/12 14:57:06 72 72 REORDER 1.3 2013/04/12 15:11:05 ? ? HDREDIT2 2.6 2013/04/12 15:13:39 ? ? CHANGE_CTD_CHANNEL_NAMES 1.0 2013/12/16 15:38:53 72 72 $END $REMARKS -CLEAN functions: 2013/03/30 16:40:30 Interpolation by Record Number, in Pressure Set event to last 4 characters of file name -The following SHIFT parameters were used. Shift Channel: Fluorescence:Wetlabs:ECO-AFL [mg/m^3] # of Records to Advance (-ve for Delay): At REC# 0 Shift= 6.00 -The following SHIFT parameters were used. Shift Channel: Conductivity:Primary [S/m] # of Records to Advance (-ve for Delay): At REC# 0 Shift= -0.50 Salinity was recalculated after shift -The following SHIFT parameters were used. Shift Channel: Conductivity:Secondary [S/m] # of Records to Advance (-ve for Delay): At REC# 0 Shift= -0.80 Salinity was recalculated after shift -The following SHIFT parameters were used. Shift Channel: pH:SBE [pH Units] # of Records to Advance (-ve for Delay): At REC# 0 Shift= 48.00 -The following DELETE parameters were used: Surface Record Removal: Last Press Min Maximum Surface Pressure (relative): 10.00 Surface Swell Pressure Tolerance: 1.00 Pressure filtered over width: 15 Swells deleted. Warning message if pressure difference of 2.00 Drop rates < 0.30m/s (calculated over 11 points) will be deleted. Drop rate applies in the range 10.00 to 67.32 dbars Sample interval (from FILE section of header) = 0.042 seconds. -CTDEDIT 2013/04/08 15:47:00 86 records were deleted in this editing session. 116 changes in channel Salinity:T1:C1 -CALIB parameters: 2013/04/12 14:13:15 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = P:\Cruise_Data_Processing\2012-67\Processing\doc\2012-67-recal1.ccf Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 14 Oxygen:Dissolved:SBE mL/L 10 0.4800000E-01 0.1000000E+01 -The following FILTER parameters were used. Median filter was used. Filter width = 11 The following channel(s) were filtered. Fluorescence:Wetlabs:ECO-AFL Fluorescence:Seapoint -The following BINAVE parameters were used: Bin channel = Pressure Averaging interval = 1.00 Minimum bin value = 0.000 Average value was used Interpolated values were NOT used for empty bins Channel 'NUMBER_OF_BIN_RECORDS' was added to file. -REMOVECH 2013/04/12 14:56:35 The following CHANNEL(S) were removed: Scan_Number Temperature:Primary [deg C (ITS90)] Conductivity:Primary [S/m] Conductivity:Secondary [S/m] Oxygen:Voltage:SBE [volts] pH:SBE [pH Units] Descent_Rate [m/s] Status:Pump Salinity:T0:C0 [PSS-78] Flag -CHANGE units: 'Oxygen:Dissolved:SBE [mL/L]' changed from mL/L to umol/kg -HEADER EDITS: 2013/04/12 15:13:39 Applied edit header: P:\Cruise_Data_Processing\2012-67\Processing\doc\2012-67-HDR.TXT Channel 1: Pressure [decibar] Units: dbars ==> decibar Format: F10.3 ==> F7.1 Channel 3: Fluorescence:URU:Wetlabs [mg/m^3] Name: Fluorescence:Wetlabs:ECO-AFL ==> Fluorescence:URU:Wetlabs Channel 5: Oxygen:Dissolved:SBE [mL/L] Format: F8.3 ==> F7.2 Channel 4: Salinity:Practical:T1:C1 [PSS-78] Name: Salinity:T1:C1 ==> Salinity:Practical:T1:C1 $END *COMMENTS SBE HEADER Sea-Bird SBE 9 Data File: FileName = C:\Data\2012-67\2012-67.001.hex Software Version Seasave V 7.21d Temperature SN = 2106 Conductivity SN = 1764 Number of Bytes Per Scan = 37 Number of Voltage Words = 4 Number of Scans Averaged by the Deck Unit = 1 System UpLoad Time = Oct 10 2012 07:10:31 NMEA Latitude = 48 31.28 N NMEA Longitude = 124 29.31 W NMEA UTC (Time) = Oct 10 2012 14:09:21 Store Lat/Lon Data = Append to Every Scan SBE 11plus V 5.1e number of scans to average = 1 pressure baud rate = 9600 NMEA baud rate = 4800 Latitude/Longitude added to scan GPIB address = 1 advance primary conductivity 0.073 seconds advance secondary conductivity 0.073 seconds S> Ricker 2012-67 Station: JF 05 Depth(m): 86 System UTC = Oct 10 2012 06:10:31 # nquan = 15 # nvalues = 3447 # units = specified # name 0 = scan: Scan Count # name 1 = prDM: Pressure, Digiquartz [db] # name 2 = t090C: Temperature [ITS-90, deg C] # name 3 = t190C: Temperature, 2 [ITS-90, deg C] # name 4 = c0S/m: Conductivity [S/m] # name 5 = c1S/m: Conductivity, 2 [S/m] # name 6 = sbeox0V: Oxygen raw, SBE 43 [V] # name 7 = flECO-AFL: Fluorescence, WET Labs ECO-AFL/FL [mg/m^3] # name 8 = ph: pH # name 9 = dz/dtM: Descent Rate [m/s] # name 10 = pumps: Pump Status # name 11 = sal00: Salinity, Practical [PSU] # name 12 = sal11: Salinity, Practical, 2 [PSU] # name 13 = sbeox0ML/L: Oxygen, SBE 43 [ml/l], WS = 2 # name 14 = flag: flag # span 0 = 1, 3447 # span 1 = 4.477, 77.315 # span 2 = 7.4611, 9.7988 # span 3 = 7.4603, 9.7958 # span 4 = 3.433427, 3.458053 # span 5 = 3.433496, 3.458014 # span 6 = 1.0149, 1.9236 # span 7 = 0.2862, 7.3973 # span 8 = 7.658, 7.906 # span 9 = -1.217, 1.241 # span 10 = 0, 1 # span 11 = 31.5359, 33.4671 # span 12 = 31.5177, 33.4688 # span 13 = 1.75331, 4.60336 # span 14 = 0.0000e+00, 0.0000e+00 # interval = seconds: 0.0416667 # start_time = Oct 10 2012 14:09:21 [NMEA time, header] # bad_flag = -9.990e-29 # # # # # 2106 # 01-Apr-11 # 1 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.000 # 4.14706003e-003 # 6.31100076e-004 # 2.13431760e-005 # 2.18854475e-006 # 1000.000 # 1.00000000 # 0.0000 # # # # # # 1764 # 29-Mar-11 # 1 # # 0.0000 # 2000.0000 # 0 # # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.0 # -9.57000000e-008 # # # -4.15464915e+000 # 4.87579437e-001 # -6.56660246e-004 # 5.55755549e-005 # -9.57000000e-008 # 3.2500e-006 # # 0.00000000e+000 # # 1.00000000 # 0.00000 # # # # # # 63507 # 12-Apr-11 # -4.435468e+004 # -1.845750e-001 # 1.192740e-002 # 3.979900e-002 # 0.000000e+000 # 2.993572e+001 # -3.336200e-004 # 3.759160e-006 # 1.565300e-009 # 0.99986626 # 5.62145 # 0.000000e+000 # 1.283280e-002 # -9.295010e+000 # # # # # # 2710 # 01-Apr-11 # 1 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.000 # 4.36717391e-003 # 6.46683268e-004 # 2.34981097e-005 # 2.22352352e-006 # 1000.000 # 1.00000000 # 0.0000 # # # # # # 2128 # 29-Mar-11 # 1 # # 0.0000 # 2000.0000 # 0 # # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.0 # -9.57000000e-008 # # # -1.01926507e+001 # 1.46093888e+000 # -2.51557628e-003 # 2.74924248e-004 # -9.57000000e-008 # 3.2500e-006 # # 0.00000000e+000 # # 1.00000000 # 0.00000 # # # # # # # # # # # # # # # # # # 0851 # 29-May-2012 # 4.5412 # 2.4967 # # # # # # # # # 0997 # 23-Apr-11p # 1 # # # 0.0000 # 0.0000e+000 # 0.0000 # 0.00e+000 # 0.0000 # 0.0 # # # # 4.8010e-001 # -0.4816 # 1.4264e-003 # 2.8936e-005 # -9.0212e-007 # 2.5826e+000 # 1.92630e-004 # -4.64800e-002 # 3.6000e-002 # 1.5600 #

-3.3000e-002

#

5.0000e+003

#

1.4500e+003

# # # # # # # 2216 # June 2012 # 1.30000000e+001 # # 0.0427 # # # # datcnv_date = Mar 30 2013 14:04:16, 7.21d [datcnv_vars = 11] # datcnv_in = P:\Cruise_Data_Processing\2012-67\RAW\CTD\2012-67-0001.hex P:\Crui se_Data_Processing\2012-67\Processing\doc\2012-67-ctd.xmlcon # datcnv_skipover = 0 # datcnv_ox_hysteresis_correction = yes # wildedit_date = Mar 30 2013 14:15:06, 7.21d # wildedit_in = P:\Cruise_Data_Processing\2012-67\Processing\convert\2012-67-000 1.cnv # wildedit_pass1_nstd = 2.0 # wildedit_pass2_nstd = 5.0 # wildedit_pass2_mindelta = 0.000e+000 # wildedit_npoint = 50 # wildedit_vars = prDM t090C t190C c0S/m c1S/m # wildedit_excl_bad_scans = yes # alignctd_date = Mar 30 2013 14:53:54, 7.21d # alignctd_in = P:\Cruise_Data_Processing\2012-67\Processing\wildedit\2012-67-00 01.cnv # alignctd_adv = sbeox0V 4.000 # celltm_date = Mar 30 2013 15:44:35, 7.21d # celltm_in = P:\Cruise_Data_Processing\2012-67\Processing\align\2012-67-0001.cn v # celltm_alpha = 0.0300, 0.0300 # celltm_tau = 9.0000, 9.0000 # celltm_temp_sensor_use_for_cond = primary, secondary # Derive_date = Mar 30 2013 15:48:07, 7.21d [derive_vars = 3] # Derive_in = P:\Cruise_Data_Processing\2012-67\Processing\celltm\2012-67-0001.c nv P:\Cruise_Data_Processing\2012-67\Processing\doc\2012-67-ctd.xmlcon # derive_time_window_docdt = seconds: 2 # derive_ox_tau_correction = yes # file_type = ascii END* CTDEDIT was used to remove some surface records and records corrupted by shed wakes; salinity was cleaned. Data Processing Notes: ---------------------- Transmissivity and fluorescence are nominal and unedited except that some records were removed in editing temperature and salinity. Dissolved Oxygen data were recalibrated by adjusting the values of SOC and OFFSET in the configuration file, based on the results of cruise 2012-01, because there was no calibration sampling during this cruise. Since it is likely that some drift had occurred since February 2012, these data must be considered less reliable than usual. A further correction was based on cruise 2012-49 during which negative DO values were found in anoxic water. Salinity is considered +/-0.002 based primarily on a post-cruise calibration. A pH sensor was attached to the CTD, but the data are not included in the files to be placed in the IOS Data Library because no field calibration information was available at the time of processing, and there are some concerns about how the sensors perform. For details on the processing see processing report: 2012-67-proc.doc. *CALIBRATION $TABLE: CORRECTED CHANNELS ! Name Units Fmla Pad Coefficients ! ---------------------- ------ ---- ------ ------------ Oxygen:Dissolved:SBE mL/L 10 -99 () (0.48E-01 1) $END !--1--- ---2---- ---3--- ---4---- --5--- --6-- -7-- !Pressu Temperat Fluores Salinity Oxygen Oxyge Numb !re ure: cence: :T1:C1 : n: er_o ! Secondar URU: Dissol Disso ~bin ! y Wetlabs ved: lved: _rec ! SBE SBE ords !------ -------- ------- -------- ------ ----- ---- *END OF HEADER 6.0 9.7144 0.918 31.5392 4.53 197.4 41 7.0 9.7150 1.030 31.5395 4.52 197.0 45 8.0 9.7158 1.029 31.5393 4.51 196.4 54 9.0 9.7163 1.105 31.5392 4.51 196.5 47 10.0 9.7175 1.057 31.5394 4.51 196.5 36 11.0 9.7181 0.897 31.5416 4.51 196.8 42 12.0 9.7180 0.982 31.5425 4.50 195.9 48 13.0 9.7180 1.070 31.5461 4.45 194.1 49 14.0 9.7192 1.036 31.5476 4.45 194.1 38 15.0 9.7238 0.913 31.5588 4.46 194.2 37 16.0 9.7302 1.010 31.5665 4.42 192.9 32 17.0 9.7429 0.934 31.5799 4.40 191.9 33 18.0 9.7616 0.900 31.5926 4.45 193.8 34 19.0 9.7836 0.914 31.5989 4.52 196.8 34 20.0 9.7932 0.883 31.6022 4.58 199.8 35 21.0 9.7851 0.957 31.6035 4.64 202.0 38 22.0 9.7682 0.916 31.6077 4.64 202.4 46 23.0 9.7443 0.931 31.6092 4.61 201.0 34 24.0 9.7239 0.943 31.6127 4.57 199.3 31 25.0 9.6919 1.238 31.6149 4.54 197.9 32 26.0 9.6733 0.851 31.6133 4.51 196.6 34 27.0 9.6313 0.834 31.6204 4.45 193.8 30 28.0 9.6088 0.883 31.6222 4.37 190.3 30 29.1 9.5806 0.762 31.6365 4.27 186.0 34 30.0 9.5709 0.850 31.6463 4.22 183.9 39 31.0 9.5628 0.787 31.6610 4.21 183.6 34 32.0 9.5524 0.911 31.6834 4.22 183.7 30 33.0 9.5464 0.791 31.6949 4.23 184.2 31 34.0 9.5427 0.758 31.7083 4.24 184.9 34 35.0 9.5403 0.809 31.7243 4.26 185.5 34 36.0 9.5357 1.015 31.7376 4.27 186.0 34 37.0 9.5319 1.058 31.7518 4.27 186.2 32 38.0 9.5310 0.873 31.7583 4.28 186.3 32 39.0 9.5261 0.859 31.7707 4.28 186.5 31 40.0 9.5273 0.858 31.7753 4.28 186.6 37 41.0 9.5251 0.898 31.7793 4.27 186.1 39 42.0 9.5205 0.826 31.7870 4.27 186.0 34 43.0 9.5077 0.857 31.7989 4.26 185.8 32 44.0 9.5016 0.815 31.8063 4.24 184.9 33 45.0 9.4661 0.960 31.8350 4.20 183.0 36 46.0 9.4082 1.051 31.8797 4.15 180.6 34 47.0 9.3601 0.836 31.9153 4.09 178.2 31 48.0 9.3218 0.802 31.9475 4.03 175.5 36 49.0 9.2663 0.887 31.9940 3.97 172.8 38 50.0 9.2492 1.003 32.0075 3.94 171.4 29 51.0 9.1345 0.774 32.0944 3.87 168.6 28 52.2 9.0861 0.852 32.1411 3.72 162.1 18 53.0 8.9947 0.767 32.2116 3.62 157.5 36 54.0 8.9074 0.841 32.2801 3.51 152.9 33 55.0 8.8575 0.716 32.3201 3.41 148.3 34 56.0 8.6851 0.833 32.4532 3.26 141.9 40 57.0 8.5753 0.825 32.5447 3.12 136.0 37 58.0 8.4711 0.681 32.6253 3.04 132.4 31 59.0 8.4233 0.521 32.6622 2.97 129.3 26 60.0 8.2369 0.555 32.8199 2.86 124.4 28 61.0 8.2240 0.548 32.8344 2.69 117.3 34 62.0 8.1114 0.588 32.9315 2.51 109.1 38 63.0 7.9994 0.662 33.0232 2.35 102.1 38 64.0 7.7682 0.599 33.2188 2.19 95.5 36 65.0 7.6147 0.641 33.3477 2.01 87.6 33 66.0 7.5662 0.566 33.3846 1.92 83.4 36 67.0 7.5440 0.651 33.4018 1.89 82.2 35 68.0 7.5174 0.572 33.4231 1.87 81.2 32 69.0 7.4995 0.611 33.4372 1.84 80.1 32 70.0 7.4892 0.713 33.4459 1.83 79.8 29 71.0 7.4871 0.669 33.4481 1.82 79.2 32 72.0 7.4853 0.698 33.4493 1.81 79.0 34 73.0 7.4828 0.682 33.4511 1.82 79.0 35 74.0 7.4788 0.842 33.4550 1.82 79.0 35 75.0 7.4752 0.636 33.4589 1.81 78.9 37 76.0 7.4699 0.680 33.4632 1.81 78.8 41 76.8 7.4672 0.633 33.4655 1.81 78.9 10