*2013/12/16 15:38:35.92 *IOS HEADER VERSION 1.10 2011/10/26 2011/10/26 *FILE START TIME : UTC 2012/08/09 16:54:45.000 TIME INCREMENT : 0 0 0 0.416667E-01 0 ! (day hr min sec ms) NUMBER OF RECORDS : 104 DATA DESCRIPTION : CTD FILE TYPE : ASCII CRC : 72720E51 NUMBER OF CHANNELS : 7 $TABLE: CHANNELS ! No Name Units Minimum Maximum !--- -------------------------- --------------- -------------- -------------- 1 Pressure decibar 4.412 106.675 2 Temperature:Primary 'deg C (ITS90)' 6.5975 13.9853 3 Fluorescence:URU:Wetlabs mg/m^3 0.42E-01 3.092 4 Salinity:T0:C0 PSS-78 31.9629 33.8427 5 Oxygen:Dissolved:SBE mL/L 1.403 7.185 6 Oxygen:Dissolved:SBE umol/kg 61.01333 313.288 7 Number_of_bin_records n/a 5 44 $END $TABLE: CHANNEL DETAIL ! No Pad Start Width Format Type Decimal_Places !--- ---- ----- ----- ------ ---- -------------- 1 -99 ' ' 7 F ' ' 1 2 -99 ' ' 9 F ' ' 4 3 -99 ' ' 8 F ' ' 3 4 -99 ' ' 9 F ' ' 4 5 -99 ' ' 7 F ' ' 2 6 -99 ' ' 6 F ' ' 1 7 ' ' ' ' 5 I I 0 $END $REMARKS This file converted from Sea-Bird file: P:\Cruise_Data_Processing\2012-54\Pro $END *ADMINISTRATION MISSION : 2012-54 AGENCY : 'PBS, Marine Ecosystems and Aquaculture Division,' CONTINUED : ' Nanaimo, B.C.' COUNTRY : Canada PROJECT : Conservation Biology Herring Trawl Survey SCIENTIST : Boldt J. PLATFORM : W.E. Ricker *LOCATION GEOGRAPHIC AREA : WCVI STATION : 6 EVENT NUMBER : 11 LATITUDE : 48 34.92000 N ! (deg min) LONGITUDE : 125 17.66000 W ! (deg min) WATER DEPTH : 120 *INSTRUMENT TYPE : Sea-Bird CTD MODEL : SBE-911plus SERIAL NUMBER : 0443 $REMARKS SOFTWARE VERSION SEASAVE V 7.21D $END *HISTORY $TABLE: PROGRAMS ! Name Vers Date Time Recs In Recs Out ! ------------------------ ------ ---------- -------- --------- --------- SBE_IOS 3.1.2 2012/11/03 14:49:14 8460 8460 CLEAN 5.0.4 2012/11/03 14:49:45 8460 8460 SHIFTDAT 3.4 2012/11/03 15:19:37 8460 8460 SHIFTDAT 3.4 2012/11/03 15:30:33 8460 8460 SHIFTDAT 3.4 2012/11/03 15:30:55 8460 8460 SHIFTDAT 3.4 2012/11/03 15:31:19 8460 8460 DELETE 6.3 2012/11/03 15:36:29 8460 2935 CTDEDIT 4.61 2012/11/03 16:56:50 2935 2860 CALIB 11.7 2012/11/05 07:59:10 2860 2860 FILTERS 4.3 2012/11/05 07:59:23 2860 2860 BINAVE 4.1.1 2012/11/05 07:59:31 2860 104 REMOVECH 8.1.1 2012/11/05 08:08:33 104 104 CHGUNITS 3.0 2012/11/05 08:09:21 104 104 REORDER 1.3 2012/11/05 08:09:49 ? ? HDREDIT2 2.5.1 2012/11/05 08:11:24 ? ? CHANGE_CTD_CHANNEL_NAMES 1.0 2013/12/16 15:38:35 104 104 $END $REMARKS -CLEAN functions: 2012/11/03 14:49:35 20 Interpolation by Record Number, in Pressure Set event to last 4 characters of file name -The following SHIFT parameters were used. Shift Channel: Fluorescence:Wetlabs:ECO-AFL # of Records to Advance (-ve for Delay): At REC# 0 Shift= 12.00 -The following SHIFT parameters were used. Shift Channel: Conductivity:Primary # of Records to Advance (-ve for Delay): At REC# 0 Shift= -0.50 Salinity was recalculated after shift -The following SHIFT parameters were used. Shift Channel: Conductivity:Secondary # of Records to Advance (-ve for Delay): At REC# 0 Shift= -0.50 Salinity was recalculated after shift -The following SHIFT parameters were used. Shift Channel: pH:SBE # of Records to Advance (-ve for Delay): At REC# 0 Shift= 48.00 -The following DELETE parameters were used: Surface Record Removal: Last Press Min Maximum Surface Pressure (relative): 10.00 Surface Swell Pressure Tolerance: 1.00 Pressure filtered over width: 15 Swells deleted. Warning message if pressure difference of 2.00 Drop rates < 0.30m/s (calculated over 11 points) will be deleted. Drop rate applies in the range 10.00 to 97.02 dbars Sample interval (from FILE section of header) = 0.042 seconds. -CTDEDIT 2012/11/03 16:56:50 75 records were deleted in this editing session. 57 changes in channel Salinity:T0:C0 -CALIB parameters: 2012/11/05 07:59:10 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = P:\Cruise_Data_Processing\2012-54\Processing\doc\2012-54-recal1.CCF Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 14 Oxygen:Dissolved:SBE mL/L 10 0.4800000E-01 0.1000000E+01 -The following FILTER parameters were used. Median filter was used. Filter width = 11 The following channel(s) were filtered. Fluorescence:Wetlabs:ECO-AFL Fluorescence:Seapoint -The following BINAVE parameters were used: Bin channel = Pressure Averaging interval = 1.00 Minimum bin value = 0.000 Average value was used Interpolated values were NOT used for empty bins Channel 'NUMBER_OF_BIN_RECORDS' was added to file. -REMOVECH 2012/11/05 08:08:33 The following CHANNEL(S) were removed: Scan_Number Temperature:Secondary [deg C (ITS90)] Conductivity:Primary [S/m] Conductivity:Secondary [S/m] Oxygen:Voltage:SBE [volts] pH:SBE [pH Units] Descent_Rate [m/s] Status:Pump Salinity:T1:C1 [PSS-78] Flag -CHANGE units: 'Oxygen:Dissolved:SBE [mL/L]' changed from mL/L to umol/kg -HEADER EDITS: 2012/11/05 08:11:24 Applied edit header: P:\Cruise_Data_Processing\2012-54\Processing\doc\2012-54-HDR.TXT Channel 1: Pressure [decibar] Units: dbars ==> decibar Format: F10.3 ==> F7.1 Channel 3: Fluorescence:URU:Wetlabs [mg/m^3] Name: Fluorescence:Wetlabs:ECO-AFL ==> Fluorescence:URU:Wetlabs Channel 5: Oxygen:Dissolved:SBE [mL/L] Format: F8.3 ==> F7.2 Channel 4: Salinity:Practical:T0:C0 [PSS-78] Name: Salinity:T0:C0 ==> Salinity:Practical:T0:C0 $END *COMMENTS SBE HEADER Sea-Bird SBE 9 Data File: FileName = C:\Data\2012- Herring August Trawl\2012-54-011.hex Software Version Seasave V 7.21d Temperature SN = 2106 Conductivity SN = 1764 Number of Bytes Per Scan = 37 Number of Voltage Words = 4 Number of Scans Averaged by the Deck Unit = 1 System UpLoad Time = Aug 09 2012 16:58:02 NMEA Latitude = 48 34.92 N NMEA Longitude = 125 17.66 W NMEA UTC (Time) = Aug 09 2012 16:54:45 Store Lat/Lon Data = Append to Every Scan SBE 11plus V 5.1e number of scans to average = 1 pressure baud rate = 9600 NMEA baud rate = 4800 Latitude/Longitude added to scan GPIB address = 1 advance primary conductivity 0.073 seconds advance secondary conductivity 0.073 seconds S> Ricker 2012-51 Station: 6 Depth(m): 120 System UTC = Aug 09 2012 15:58:02 # nquan = 15 # nvalues = 8460 # units = specified # name 0 = scan: Scan Count # name 1 = prDM: Pressure, Digiquartz [db] # name 2 = t090C: Temperature [ITS-90, deg C] # name 3 = t190C: Temperature, 2 [ITS-90, deg C] # name 4 = c0S/m: Conductivity [S/m] # name 5 = c1S/m: Conductivity, 2 [S/m] # name 6 = flECO-AFL: Fluorescence, WET Labs ECO-AFL/FL [mg/m^3] # name 7 = sbeox0V: Oxygen raw, SBE 43 [V] # name 8 = ph: pH # name 9 = dz/dtM: Descent Rate [m/s] # name 10 = pumps: Pump Status # name 11 = sal00: Salinity, Practical [PSU] # name 12 = sal11: Salinity, Practical, 2 [PSU] # name 13 = sbeox0ML/L: Oxygen, SBE 43 [ml/l], WS = 2 # name 14 = flag: flag # span 0 = 1, 8460 # span 1 = 3.849, 107.024 # span 2 = 6.5961, 14.0261 # span 3 = 6.5965, 14.0122 # span 4 = 3.391948, 3.868681 # span 5 = 3.392082, 3.868914 # span 6 = -0.0313, 3.6671 # span 7 = 0.8828, 2.9524 # span 8 = 8.327, 8.947 # span 9 = -1.322, 1.365 # span 10 = 0, 1 # span 11 = 31.8983, 33.8438 # span 12 = 31.8734, 33.8449 # span 13 = 1.34967, 7.26226 # span 14 = 0.0000e+00, 0.0000e+00 # interval = seconds: 0.0416667 # start_time = Aug 09 2012 16:54:45 [NMEA time, header] # bad_flag = -9.990e-29 # # # # # 2106 # 01-Apr-11 # 1 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.000 # 4.14706003e-003 # 6.31100076e-004 # 2.13431760e-005 # 2.18854475e-006 # 1000.000 # 1.00000000 # 0.0000 # # # # # # 1764 # 29-Mar-11 # 1 # # 0.0000 # 2000.0000 # 0 # # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.0 # -9.57000000e-008 # # # -4.15464915e+000 # 4.87579437e-001 # -6.56660246e-004 # 5.55755549e-005 # -9.57000000e-008 # 3.2500e-006 # # 0.00000000e+000 # # 1.00000000 # 0.00000 # # # # # # 63507 # 12-Apr-11 # -4.435468e+004 # -1.845750e-001 # 1.192740e-002 # 3.979900e-002 # 0.000000e+000 # 2.993572e+001 # -3.336200e-004 # 3.759160e-006 # 1.565300e-009 # 0.99986626 # 5.62145 # 0.000000e+000 # 1.283280e-002 # -9.295010e+000 # # # # # # 2710 # 01-Apr-11 # 1 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.000 # 4.36717391e-003 # 6.46683268e-004 # 2.34981097e-005 # 2.22352352e-006 # 1000.000 # 1.00000000 # 0.0000 # # # # # # 2128 # 29-Mar-11 # 1 # # 0.0000 # 2000.0000 # 0 # # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.0 # -9.57000000e-008 # # # -1.01926507e+001 # 1.46093888e+000 # -2.51557628e-003 # 2.74924248e-004 # -9.57000000e-008 # 3.2500e-006 # # 0.00000000e+000 # # 1.00000000 # 0.00000 # # # # # # # # # # # # # # # # # # 0852 # 21-april-2012 # 4.6009 # 2.5060 # # # # # # # # # 0997 # 23-Apr-11p # 1 # # # 0.0000 # 0.0000e+000 # 0.0000 # 0.00e+000 # 0.0000 # 0.0 # # # # 4.8010e-001 # -0.4816 # 1.4264e-003 # 2.8936e-005 # -9.0212e-007 # 2.5826e+000 # 1.92630e-004 # -4.64800e-002 # 3.6000e-002 # 1.5600 #

-3.3000e-002

#

5.0000e+003

#

1.4500e+003

# # # # # # # 2216 # June 2012 # 1.30000000e+001 # # 0.0427 # # # # datcnv_date = Nov 03 2012 14:12:57, 7.21d [datcnv_vars = 11] # datcnv_in = P:\Cruise_Data_Processing\2012-54\RAW\CTD\2012-54-0011.hex P:\Crui se_Data_Processing\2012-54\Processing\doc\2012-54-ctd-new.xmlcon # datcnv_skipover = 0 # datcnv_ox_hysteresis_correction = no # wildedit_date = Nov 03 2012 14:14:11, 7.21d # wildedit_in = P:\Cruise_Data_Processing\2012-54\Processing\convert\2012-54-001 1.cnv # wildedit_pass1_nstd = 2.0 # wildedit_pass2_nstd = 5.0 # wildedit_pass2_mindelta = 0.000e+000 # wildedit_npoint = 50 # wildedit_vars = prDM t090C t190C c0S/m c1S/m # wildedit_excl_bad_scans = yes # alignctd_date = Nov 03 2012 14:34:16, 7.21d # alignctd_in = P:\Cruise_Data_Processing\2012-54\Processing\wildedit\2012-54-00 11.cnv # alignctd_adv = sbeox0V 4.000 # celltm_date = Nov 03 2012 14:39:20, 7.21d # celltm_in = P:\Cruise_Data_Processing\2012-54\Processing\align\2012-54-0011.cn v # celltm_alpha = 0.0300, 0.0300 # celltm_tau = 9.0000, 9.0000 # celltm_temp_sensor_use_for_cond = primary, secondary # Derive_date = Nov 03 2012 14:40:37, 7.21d [derive_vars = 3] # Derive_in = P:\Cruise_Data_Processing\2012-54\Processing\celltm\2012-54-0011.c nv P:\Cruise_Data_Processing\2012-54\Processing\doc\2012-54-ctd-new.xmlcon # derive_time_window_docdt = seconds: 2 # derive_ox_tau_correction = yes # file_type = ascii END* CTDEDIT was used to remove some surface records and records corrupted by shed wakes; salinity was cleaned lightly. Data Processing Notes: ---------------------------------------------------------------------- Fluorescence data are nominal and unedited, except that some records were removed in editing temperature and salinity. There was no calibration sampling for dissolved oxygen, but the results of cruise 2012-01 were used to derive DO concentration. A small correction was later added based on negative DO values found during 2012-49 in the anoxic layer of Saanich Inlet. There was no calibration sampling for salinity, but the results of cruise 2012-01 in February 2012 suggest calibration drift is <0.001. The SBE pH sensor data has been removed from this file since there was no field calibration information available and there are concerns about how the sensor performs. For details on processing see processing report: 2012-54-proc.doc. ---------------------------------------------------------------------- *CALIBRATION $TABLE: CORRECTED CHANNELS ! Name Units Fmla Pad Coefficients ! ---------------------- ------ ---- ------ ------------ Oxygen:Dissolved:SBE mL/L 10 -99 () (0.48E-01 1) $END !--1--- ---2---- ---3--- ---4---- --5--- --6-- -7-- !Pressu Temperat Fluores Salinity Oxygen Oxyge Numb !re ure: cence: :T0:C0 : n: er_o ! Primary URU: Dissol Disso ~bin ! Wetlabs ved: lved: _rec ! SBE SBE ords !------ -------- ------- -------- ------ ----- ---- *END OF HEADER 4.4 13.9853 2.512 31.9653 7.18 313.3 5 4.8 13.9663 2.758 31.9649 7.12 310.3 10 6.0 13.8770 3.044 31.9649 6.79 296.2 28 7.0 13.6073 3.092 31.9629 6.57 286.3 34 8.0 12.8667 3.043 31.9727 6.44 280.8 33 9.0 12.5802 2.761 31.9739 6.34 276.6 32 10.0 12.2571 2.446 31.9927 6.30 274.5 31 11.0 12.1518 2.254 31.9942 6.22 271.1 30 12.0 12.0460 2.095 32.0099 6.07 264.6 29 13.0 11.9842 1.803 32.0294 5.87 255.7 30 14.0 11.8196 1.616 32.0438 5.61 244.5 30 15.0 11.4297 1.457 32.0518 5.30 230.8 29 16.0 11.2163 1.363 32.0733 5.06 220.5 28 17.0 10.6166 1.255 32.1389 4.98 216.9 27 18.0 10.3241 1.185 32.1979 4.82 210.0 26 19.0 10.3211 1.175 32.1989 4.57 198.9 28 20.0 10.0947 1.122 32.2526 4.40 191.8 25 21.0 9.8171 1.009 32.3624 4.34 188.9 24 22.0 9.6954 0.909 32.4163 4.29 186.8 30 23.0 9.6490 0.854 32.4393 4.21 183.2 31 24.0 9.6276 0.812 32.4495 4.03 175.7 25 25.0 9.5948 0.798 32.4621 3.85 167.8 25 26.0 9.4261 0.722 32.5162 3.68 160.5 25 27.0 9.1258 0.688 32.5947 3.54 154.3 25 28.0 8.9622 0.657 32.6528 3.44 149.7 25 29.0 8.7138 0.585 32.7261 3.38 147.3 26 30.0 8.4839 0.608 32.7931 3.33 144.8 27 31.0 8.3732 0.608 32.8262 3.25 141.5 29 32.0 8.2636 0.569 32.8873 3.16 137.6 25 33.0 8.1698 0.496 32.9428 3.13 136.2 22 34.0 8.1368 0.465 32.9838 3.20 139.4 24 35.0 8.0566 0.444 33.0142 3.37 146.8 28 36.0 7.9066 0.340 33.0246 3.46 150.4 34 37.0 7.8006 0.285 33.0221 3.41 148.6 29 38.0 7.7830 0.280 33.0467 3.51 152.6 25 39.0 7.7528 0.284 33.0848 3.62 157.5 21 40.0 7.6496 0.241 33.1117 3.68 160.0 24 41.0 7.5864 0.215 33.1386 3.70 161.1 21 42.0 7.5574 0.194 33.1702 3.68 160.4 25 43.1 7.5293 0.175 33.1836 3.68 160.0 32 44.0 7.5253 0.183 33.1936 3.65 159.0 38 45.0 7.5072 0.181 33.1989 3.49 151.8 23 46.0 7.4649 0.153 33.2207 3.28 142.7 23 47.0 7.4147 0.160 33.2813 3.04 132.4 23 48.0 7.3893 0.165 33.3278 2.78 121.0 29 49.0 7.4170 0.185 33.3660 2.62 114.2 29 50.0 7.4214 0.213 33.4039 2.55 110.8 31 51.0 7.3844 0.189 33.4327 2.45 106.5 33 52.0 7.3619 0.177 33.4425 2.35 102.4 26 53.0 7.3259 0.147 33.4598 2.32 100.8 23 54.0 7.2853 0.148 33.4846 2.31 100.4 24 55.0 7.2665 0.156 33.5013 2.31 100.5 30 56.0 7.2593 0.157 33.5069 2.32 100.8 33 57.0 7.2551 0.146 33.5105 2.34 101.6 30 58.0 7.2521 0.140 33.5142 2.34 101.8 28 59.0 7.2438 0.142 33.5212 2.34 101.9 29 60.0 7.2316 0.116 33.5287 2.33 101.3 27 61.0 7.2116 0.137 33.5382 2.31 100.5 27 62.0 7.2006 0.113 33.5429 2.29 99.8 27 63.0 7.1941 0.117 33.5449 2.28 99.1 28 64.0 7.1832 0.131 33.5489 2.27 98.6 32 65.0 7.1697 0.111 33.5549 2.24 97.3 32 66.0 7.1612 0.109 33.5589 2.21 96.0 26 67.0 7.1416 0.106 33.5684 2.18 94.9 21 68.0 7.1195 0.101 33.5798 2.16 93.9 24 69.0 7.0963 0.122 33.5916 2.14 93.1 26 70.0 7.0760 0.117 33.6017 2.13 92.6 32 71.0 7.0667 0.113 33.6061 2.11 91.9 32 72.0 7.0592 0.093 33.6098 2.08 90.4 30 73.0 7.0488 0.107 33.6151 2.04 88.5 26 74.0 7.0245 0.121 33.6274 1.99 86.4 23 75.0 6.9865 0.106 33.6465 1.95 84.7 24 76.0 6.9500 0.090 33.6639 1.92 83.4 25 77.0 6.9096 0.077 33.6864 1.90 82.7 30 78.0 6.8922 0.084 33.6974 1.88 81.8 44 79.0 6.8800 0.092 33.7035 1.85 80.3 39 80.0 6.8633 0.076 33.7128 1.82 79.2 25 81.0 6.8416 0.066 33.7244 1.81 78.6 21 82.0 6.8372 0.093 33.7267 1.79 77.8 20 83.0 6.8321 0.075 33.7294 1.77 76.8 23 84.0 6.8115 0.066 33.7401 1.75 76.0 28 85.0 6.7909 0.089 33.7498 1.72 74.8 37 86.0 6.7728 0.079 33.7593 1.68 73.2 35 87.0 6.7461 0.084 33.7733 1.65 71.9 30 88.0 6.7156 0.080 33.7844 1.64 71.2 27 89.0 6.7066 0.075 33.7878 1.62 70.7 27 90.0 6.7026 0.085 33.7888 1.61 70.2 29 91.0 6.6991 0.061 33.7906 1.59 69.2 29 92.0 6.6908 0.075 33.7941 1.56 67.8 27 93.0 6.6755 0.060 33.8019 1.53 66.6 25 94.0 6.6501 0.057 33.8161 1.52 66.0 28 95.0 6.6381 0.062 33.8218 1.50 65.5 27 96.0 6.6349 0.055 33.8234 1.50 65.2 26 97.0 6.6292 0.072 33.8262 1.49 64.9 25 98.0 6.6273 0.055 33.8272 1.49 64.7 27 99.0 6.6249 0.063 33.8285 1.48 64.4 28 100.0 6.6230 0.069 33.8296 1.48 64.3 26 101.0 6.6219 0.068 33.8301 1.47 64.0 25 102.0 6.6201 0.058 33.8311 1.47 64.1 27 103.0 6.6193 0.053 33.8315 1.47 63.7 31 104.0 6.6178 0.042 33.8323 1.44 62.7 30 105.0 6.6077 0.058 33.8376 1.43 62.2 29 106.0 6.5978 0.064 33.8424 1.43 62.0 33 106.7 6.5975 0.067 33.8427 1.40 61.0 28