*2013/12/16 15:38:33.67 *IOS HEADER VERSION 1.10 2011/10/26 2011/10/26 *FILE START TIME : UTC 2012/07/15 21:28:36.000 TIME INCREMENT : 0 0 0 0.416667E-01 0 ! (day hr min sec ms) NUMBER OF RECORDS : 83 DATA DESCRIPTION : CTD FILE TYPE : ASCII CRC : E911711A NUMBER OF CHANNELS : 7 $TABLE: CHANNELS ! No Name Units Minimum Maximum !--- -------------------------- --------------- -------------- -------------- 1 Pressure decibar 4.149 85.733 2 Temperature:Primary 'deg C (ITS90)' 8.7265 9.9108 3 Fluorescence:URU:Wetlabs mg/m^3 0.294 0.693 4 Salinity:T0:C0 PSS-78 29.5648 30.8494 5 Oxygen:Dissolved:SBE mL/L 4.907 5.381 6 Oxygen:Dissolved:SBE umol/kg 213.9634 234.8823 7 Number_of_bin_records n/a 19 42 $END $TABLE: CHANNEL DETAIL ! No Pad Start Width Format Type Decimal_Places !--- ---- ----- ----- ------ ---- -------------- 1 -99 ' ' 7 F ' ' 1 2 -99 ' ' 9 F ' ' 4 3 -99 ' ' 8 F ' ' 3 4 -99 ' ' 9 F ' ' 4 5 -99 ' ' 7 F ' ' 2 6 -99 ' ' 6 F ' ' 1 7 ' ' ' ' 5 I I 0 $END $REMARKS This file converted from Sea-Bird file: P:\Cruise_Data_Processing\2012-50\Pro $END *ADMINISTRATION MISSION : 2012-50 AGENCY : PBS, Salmon And Freshwater Ecosystems, Nanaimo, B.C. COUNTRY : Canada PROJECT : High Seas Salmon SCIENTIST : Thiess M. PLATFORM : W.E. Ricker *LOCATION GEOGRAPHIC AREA : WCVI / QCSound / QCStrait STATION : JS06 EVENT NUMBER : 409 LATITUDE : 50 26.70000 N ! (deg min) LONGITUDE : 125 59.89000 W ! (deg min) *INSTRUMENT TYPE : Sea-Bird CTD MODEL : SBE-911plus SERIAL NUMBER : 0443 $REMARKS SOFTWARE VERSION SEASAVE V 7.21D $END *HISTORY $TABLE: PROGRAMS ! Name Vers Date Time Recs In Recs Out ! ------------------------ ------ ---------- -------- --------- --------- SBE_IOS 3.1.2 2012/12/11 10:42:05 6925 6925 CLEAN 5.0.4 2012/12/11 10:44:09 6925 6925 SHIFTDAT 3.4 2012/12/11 11:21:04 6925 6925 SHIFTDAT 3.4 2012/12/11 11:50:37 6925 6925 SHIFTDAT 3.4 2012/12/11 11:56:12 6925 6925 SHIFTDAT 3.4 2012/12/11 13:25:01 6925 6925 DELETE 6.3 2012/12/11 16:02:28 6925 2821 CTDEDIT 4.61 2012/12/13 12:22:14 2821 2795 CALIB 11.7 2012/12/13 13:33:08 2795 2795 FILTERS 4.3 2012/12/13 13:33:50 2795 2795 BINAVE 4.1.1 2012/12/13 13:34:15 2795 83 REMOVECH 8.1.1 2012/12/13 13:34:34 83 83 CHGUNITS 3.0 2012/12/13 13:37:21 83 83 REORDER 1.3 2012/12/13 13:38:46 ? ? HDREDIT2 2.5.1 2012/12/13 17:07:25 ? ? CHANGE_CTD_CHANNEL_NAMES 1.0 2013/12/16 15:38:33 83 83 $END $REMARKS -CLEAN functions: 2012/12/11 10:42:29 20 Interpolation by Record Number, in Pressure Set event to last 4 characters of file name -The following SHIFT parameters were used. Shift Channel: Fluorescence:Wetlabs:ECO-AFL # of Records to Advance (-ve for Delay): At REC# 0 Shift= 12.00 -The following SHIFT parameters were used. Shift Channel: Conductivity:Primary # of Records to Advance (-ve for Delay): At REC# 0 Shift= -0.50 Salinity was recalculated after shift -The following SHIFT parameters were used. Shift Channel: Conductivity:Secondary # of Records to Advance (-ve for Delay): At REC# 0 Shift= -0.50 Salinity was recalculated after shift -The following SHIFT parameters were used. Shift Channel: pH:SBE # of Records to Advance (-ve for Delay): At REC# 0 Shift= 48.00 -The following DELETE parameters were used: Surface Record Removal: Last Press Min Maximum Surface Pressure (relative): 10.00 Surface Swell Pressure Tolerance: 1.00 Pressure filtered over width: 15 Swells deleted. Warning message if pressure difference of 2.00 Drop rates < 0.30m/s (calculated over 11 points) will be deleted. Drop rate applies in the range 10.00 to 76.09 dbars Sample interval (from FILE section of header) = 0.042 seconds. -CTDEDIT 2012/12/13 12:22:14 26 records were deleted in this editing session. No data values were changed. -CALIB parameters: 2012/12/13 13:33:08 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = P:\Cruise_Data_Processing\2012-50\Processing\doc\2012-50-recal1.CCF Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 14 Oxygen:Dissolved:SBE mL/L 10 0.4800000E-01 0.1000000E+01 -The following FILTER parameters were used. Median filter was used. Filter width = 11 The following channel(s) were filtered. Fluorescence:Wetlabs:ECO-AFL Fluorescence:Seapoint -The following BINAVE parameters were used: Bin channel = Pressure Averaging interval = 1.00 Minimum bin value = 0.000 Average value was used Interpolated values were NOT used for empty bins Channel 'NUMBER_OF_BIN_RECORDS' was added to file. -REMOVECH 2012/12/13 13:34:34 The following CHANNEL(S) were removed: Scan_Number Temperature:Secondary [deg C (ITS90)] Conductivity:Primary [S/m] Conductivity:Secondary [S/m] Oxygen:Voltage:SBE [volts] pH:SBE [pH Units] Descent_Rate [m/s] Status:Pump Salinity:T1:C1 [PSS-78] Flag -CHANGE units: 'Oxygen:Dissolved:SBE [mL/L]' changed from mL/L to umol/kg -HEADER EDITS: 2012/12/13 17:07:25 Applied edit header: P:\Cruise_Data_Processing\2012-50\Processing\doc\2012-50-HDR-911.TXT Channel 1: Pressure [decibar] Units: dbars ==> decibar Format: F10.3 ==> F7.1 Channel 3: Fluorescence:URU:Wetlabs [mg/m^3] Name: Fluorescence:Wetlabs:ECO-AFL ==> Fluorescence:URU:Wetlabs Channel 4: Salinity:Practical:T0:C0 [PSS-78] Name: Salinity:T0:C0 ==> Salinity:Practical:T0:C0 Channel 5: Oxygen:Dissolved:SBE [mL/L] Format: F8.3 ==> F7.2 $END *COMMENTS SBE HEADER Sea-Bird SBE 9 Data File: FileName = C:\Data\2012-50\2012-50-0409.hex Software Version Seasave V 7.21d Temperature SN = 2106 Conductivity SN = 1764 Number of Bytes Per Scan = 37 Number of Voltage Words = 4 Number of Scans Averaged by the Deck Unit = 1 System UpLoad Time = Jul 15 2012 21:29:38 NMEA Latitude = 50 26.70 N NMEA Longitude = 125 59.89 W NMEA UTC (Time) = Jul 15 2012 21:28:36 Store Lat/Lon Data = Append to Every Scan SBE 11plus V 5.1e number of scans to average = 1 pressure baud rate = 9600 NMEA baud rate = 4800 Latitude/Longitude added to scan GPIB address = 1 advance primary conductivity 0.073 seconds advance secondary conductivity 0.073 seconds S> Ricker 2012-50 Station: JS06 Depth(m): 103m System UTC = Jul 15 2012 20:29:38 # nquan = 15 # nvalues = 6925 # units = specified # name 0 = scan: Scan Count # name 1 = prDM: Pressure, Digiquartz [db] # name 2 = t090C: Temperature [ITS-90, deg C] # name 3 = t190C: Temperature, 2 [ITS-90, deg C] # name 4 = c0S/m: Conductivity [S/m] # name 5 = c1S/m: Conductivity, 2 [S/m] # name 6 = flECO-AFL: Fluorescence, WET Labs ECO-AFL/FL [mg/m^3] # name 7 = sbeox0V: Oxygen raw, SBE 43 [V] # name 8 = ph: pH # name 9 = dz/dtM: Descent Rate [m/s] # name 10 = pumps: Pump Status # name 11 = sal00: Salinity, Practical [PSU] # name 12 = sal11: Salinity, Practical, 2 [PSU] # name 13 = sbeox0ML/L: Oxygen, SBE 43 [ml/l], WS = 2 # name 14 = flag: flag # span 0 = 1, 6925 # span 1 = 2.766, 86.089 # span 2 = 8.7101, 9.9232 # span 3 = 8.7098, 9.9218 # span 4 = 3.260369, 3.296927 # span 5 = 3.260413, 3.297004 # span 6 = 0.1751, 2.9052 # span 7 = 1.9670, 2.1477 # span 8 = 8.401, 8.421 # span 9 = -1.314, 1.267 # span 10 = 0, 1 # span 11 = 29.5596, 30.8695 # span 12 = 29.5604, 30.8713 # span 13 = 4.85426, 5.33893 # span 14 = 0.0000e+00, 0.0000e+00 # interval = seconds: 0.0416667 # start_time = Jul 15 2012 21:28:36 [NMEA time, header] # bad_flag = -9.990e-29 # # # # # 2106 # 01-Apr-11 # 1 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.000 # 4.14706003e-003 # 6.31100076e-004 # 2.13431760e-005 # 2.18854475e-006 # 1000.000 # 1.00000000 # 0.0000 # # # # # # 1764 # 29-Mar-11 # 1 # # 0.0000 # 2000.0000 # 0 # # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.0 # -9.57000000e-008 # # # -4.15464915e+000 # 4.87579437e-001 # -6.56660246e-004 # 5.55755549e-005 # -9.57000000e-008 # 3.2500e-006 # # 0.00000000e+000 # # 1.00000000 # 0.00000 # # # # # # 63507 # 12-Apr-11 # -4.435468e+004 # -1.845750e-001 # 1.192740e-002 # 3.979900e-002 # 0.000000e+000 # 2.993572e+001 # -3.336200e-004 # 3.759160e-006 # 1.565300e-009 # 0.99986626 # 5.62145 # 0.000000e+000 # 1.283280e-002 # -9.295010e+000 # # # # # # 2710 # 01-Apr-11 # 1 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.000 # 4.36717391e-003 # 6.46683268e-004 # 2.34981097e-005 # 2.22352352e-006 # 1000.000 # 1.00000000 # 0.0000 # # # # # # 2128 # 29-Mar-11 # 1 # # 0.0000 # 2000.0000 # 0 # # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.0 # -9.57000000e-008 # # # -1.01926507e+001 # 1.46093888e+000 # -2.51557628e-003 # 2.74924248e-004 # -9.57000000e-008 # 3.2500e-006 # # 0.00000000e+000 # # 1.00000000 # 0.00000 # # # # # # # # # # # # # # # # # # 0852 # 21-april-2011 # 4.6009 # 2.5060 # # # # # # # # # 0997 # 23-Apr-11p # 1 # # # 0.0000 # 0.0000e+000 # 0.0000 # 0.00e+000 # 0.0000 # 0.0 # # # # 4.8010e-001 # -0.4816 # 1.4264e-003 # 2.8936e-005 # -9.0212e-007 # 2.5826e+000 # 1.92630e-004 # -4.64800e-002 # 3.6000e-002 # 1.5600 #

-3.3000e-002

#

5.0000e+003

#

1.4500e+003

# # # # # # # 2216 # June 2012 # 1.30000000e+001 # # 0.0427 # # # # datcnv_date = Dec 10 2012 17:15:17, 7.21d [datcnv_vars = 11] # datcnv_in = P:\Cruise_Data_Processing\2012-50\RAW\CTD\SBE911_13-15JUL_with_pH\ 2012-50-0409.hex P:\Cruise_Data_Processing\2012-50\Processing\doc\2012-50-SBE911-pH-new.xmlcon # datcnv_skipover = 0 # datcnv_ox_hysteresis_correction = no # wildedit_date = Dec 11 2012 09:08:28, 7.21d # wildedit_in = P:\Cruise_Data_Processing\2012-50\Processing\convert\2012-50-040 9.cnv # wildedit_pass1_nstd = 2.0 # wildedit_pass2_nstd = 5.0 # wildedit_pass2_mindelta = 0.000e+000 # wildedit_npoint = 50 # wildedit_vars = prDM t090C t190C c0S/m c1S/m # wildedit_excl_bad_scans = yes # alignctd_date = Dec 11 2012 09:09:38, 7.21d # alignctd_in = P:\Cruise_Data_Processing\2012-50\Processing\wildedit\2012-50-04 09.cnv # alignctd_adv = sbeox0V 4.000 # celltm_date = Dec 11 2012 09:49:37, 7.21d # celltm_in = P:\Cruise_Data_Processing\2012-50\Processing\align\2012-50-0409.cn v # celltm_alpha = 0.0300, 0.0300 # celltm_tau = 9.0000, 9.0000 # celltm_temp_sensor_use_for_cond = primary, secondary # Derive_date = Dec 11 2012 09:50:59, 7.21d [derive_vars = 3] # Derive_in = P:\Cruise_Data_Processing\2012-50\Processing\celltm\2012-50-0409.c nv P:\Cruise_Data_Processing\2012-50\Processing\doc\2012-50-SBE911-pH-new.xmlcon # derive_time_window_docdt = seconds: 2 # derive_ox_tau_correction = yes # file_type = ascii END* CTDEDIT was used to remove surface records. Data Processing Notes: ---------------------- The fluorescence data are nominal and unedited except that some records were removed in editing temperature and salinity. There was no Dissolved Oxygen sampling, so no estimate is made of accuracy. Recalibration was based on results of cruise 2012-01. It is likely that there has been some drift since then which usually results in values that are low by a few %. Salinity samples were stored for 4 months before they were analyzed. Based on recent cruises using the same types of bottle inserts, it appears that significant evaporation occurs after 2 months, and that by 4 months bottle values are likely to read high by an average of >0.01. Furthermore, all but one sample came from 10db where the salinity gradients were high, making the comparison even less suitable for recalibration of salinity. The last good calibration of the salinity from these sensors came from cruise 2012-01 in Feb. 2012 and showed the primary salinity to be very close to bottle values. A pH sensor was attached to the CTD for casts #355 to #409, but the data are not included in the files to be placed in the IOS Data Library because no field calibration information was available at the time of processing, and there are some concerns about how the sensors perform. For details on the processing see the report: 2012-50-proc.doc. *CALIBRATION $TABLE: CORRECTED CHANNELS ! Name Units Fmla Pad Coefficients ! ---------------------- ------ ---- ------ ------------ Oxygen:Dissolved:SBE mL/L 10 -99 () (0.48E-01 1) $END !--1--- ---2---- ---3--- ---4---- --5--- --6-- -7-- !Pressu Temperat Fluores Salinity Oxygen Oxyge Numb !re ure: cence: :T0:C0 : n: er_o ! Primary URU: Dissol Disso ~bin ! Wetlabs ved: lved: _rec ! SBE SBE ords !------ -------- ------- -------- ------ ----- ---- *END OF HEADER 4.1 9.8958 0.481 29.5699 5.37 234.6 31 5.0 9.8950 0.462 29.5702 5.38 234.8 42 6.0 9.8840 0.469 29.5754 5.38 234.9 38 7.0 9.9108 0.421 29.5648 5.34 233.3 39 8.0 9.9072 0.417 29.5662 5.31 231.6 32 9.0 9.8243 0.435 29.6082 5.30 231.4 26 10.0 9.7571 0.582 29.6423 5.30 231.5 30 11.0 9.7587 0.645 29.6408 5.26 229.7 33 12.0 9.7580 0.601 29.6413 5.22 227.6 34 13.0 9.6213 0.693 29.7693 5.20 227.1 35 14.0 9.5298 0.597 29.8608 5.19 226.4 34 15.0 9.4941 0.547 29.8974 5.18 226.2 33 16.0 9.4794 0.579 29.9123 5.18 226.1 30 17.0 9.4571 0.523 29.9354 5.18 225.9 30 18.0 9.4519 0.621 29.9412 5.17 225.4 30 19.0 9.4393 0.550 29.9557 5.16 225.0 32 20.0 9.4101 0.514 29.9877 5.15 224.6 33 21.0 9.3949 0.508 30.0055 5.15 224.5 33 22.0 9.3735 0.511 30.0309 5.15 224.6 35 23.0 9.3641 0.498 30.0421 5.15 224.5 34 24.0 9.3619 0.459 30.0464 5.14 224.4 29 25.0 9.3527 0.494 30.0597 5.14 224.3 31 26.0 9.3504 0.507 30.0632 5.14 224.0 32 27.0 9.3377 0.505 30.0788 5.14 224.0 31 28.0 9.3147 0.497 30.1057 5.13 223.9 33 29.0 9.3147 0.439 30.1058 5.13 223.9 34 30.0 9.3171 0.458 30.1034 5.13 223.8 36 31.0 9.3281 0.463 30.0909 5.12 223.3 33 32.0 9.3138 0.468 30.1071 5.11 223.1 29 33.0 9.2752 0.460 30.1499 5.12 223.4 31 34.0 9.2772 0.479 30.1476 5.12 223.2 30 35.0 9.2857 0.487 30.1390 5.11 223.2 32 36.0 9.2823 0.466 30.1428 5.11 223.1 33 37.0 9.2797 0.463 30.1466 5.12 223.5 34 38.0 9.2757 0.480 30.1496 5.13 223.9 35 39.0 9.2970 0.493 30.1258 5.13 223.7 35 40.0 9.3137 0.475 30.1072 5.13 223.6 33 41.0 9.3105 0.471 30.1119 5.13 223.7 32 42.0 9.3153 0.502 30.1061 5.13 223.7 32 43.0 9.3164 0.528 30.1041 5.12 223.6 32 44.0 9.3177 0.450 30.1025 5.12 223.4 32 45.0 9.3193 0.457 30.1008 5.11 223.1 35 46.0 9.3051 0.449 30.1150 5.11 222.9 34 47.0 9.2812 0.454 30.1394 5.11 223.0 32 48.0 9.2662 0.460 30.1556 5.10 222.6 32 49.0 9.2603 0.474 30.1637 5.10 222.5 32 50.0 9.2522 0.412 30.1751 5.10 222.5 33 51.0 9.2440 0.484 30.1866 5.10 222.5 32 52.0 9.2468 0.456 30.1827 5.10 222.5 34 53.0 9.2450 0.449 30.1854 5.09 222.2 35 54.0 9.2335 0.432 30.2009 5.09 222.1 35 55.0 9.2304 0.428 30.2054 5.09 222.1 36 56.0 9.2232 0.460 30.2149 5.09 221.9 38 57.0 9.2124 0.419 30.2283 5.09 222.0 40 58.0 9.2115 0.419 30.2296 5.09 222.1 37 59.0 9.2124 0.417 30.2284 5.08 221.7 35 60.0 9.2115 0.439 30.2299 5.08 221.7 34 61.0 9.2038 0.421 30.2401 5.08 221.5 34 62.0 9.2028 0.429 30.2417 5.07 221.3 34 63.0 9.1828 0.420 30.2699 5.07 221.1 31 64.0 9.1740 0.433 30.2815 5.07 221.3 33 65.0 9.1550 0.419 30.3067 5.08 221.8 38 66.0 9.1656 0.466 30.2921 5.07 221.3 36 67.0 9.1803 0.440 30.2731 5.07 221.4 35 68.0 9.1574 0.451 30.3060 5.07 221.3 33 69.0 9.1612 0.457 30.3012 5.07 221.2 34 70.0 9.1618 0.421 30.2995 5.07 221.3 33 71.0 9.1606 0.438 30.3013 5.08 221.4 34 72.0 9.1610 0.464 30.3028 5.07 220.9 33 73.0 9.1596 0.431 30.3049 5.05 220.5 33 74.0 9.1367 0.425 30.3356 5.05 220.5 35 75.0 9.1239 0.415 30.3522 5.05 220.4 33 76.0 9.1127 0.455 30.3670 5.05 220.2 33 77.0 9.1103 0.418 30.3695 5.04 219.9 32 78.0 9.0909 0.451 30.3947 5.02 218.8 33 79.0 9.0677 0.423 30.4255 4.99 217.6 28 80.0 9.0355 0.412 30.4685 4.97 216.6 30 81.0 8.9623 0.375 30.5616 4.95 215.8 34 82.0 8.8830 0.353 30.6577 4.94 215.4 39 83.0 8.8222 0.349 30.7321 4.92 214.6 39 84.0 8.7983 0.327 30.7612 4.91 214.0 37 85.0 8.7598 0.351 30.8090 4.91 214.1 34 85.7 8.7265 0.294 30.8494 4.92 214.5 19