*2013/12/16 15:38:32.63 *IOS HEADER VERSION 1.10 2011/10/26 2011/10/26 *FILE START TIME : UTC 2012/07/12 19:34:05.000 TIME INCREMENT : 0 0 0 0.416667E-01 0 ! (day hr min sec ms) NUMBER OF RECORDS : 103 DATA DESCRIPTION : CTD FILE TYPE : ASCII CRC : DE835200 NUMBER OF CHANNELS : 7 $TABLE: CHANNELS ! No Name Units Minimum Maximum !--- -------------------------- --------------- -------------- -------------- 1 Pressure decibar 3.213 104.972 2 Temperature:Primary 'deg C (ITS90)' 7.0567 9.9463 3 Fluorescence:URU:Wetlabs mg/m^3 0.201 6.36 4 Salinity:T0:C0 PSS-78 30.8924 33.0844 5 Oxygen:Dissolved:SBE mL/L 3.136 6.292 6 Oxygen:Dissolved:SBE umol/kg 136.4652 274.3731 7 Number_of_bin_records n/a 5 43 $END $TABLE: CHANNEL DETAIL ! No Pad Start Width Format Type Decimal_Places !--- ---- ----- ----- ------ ---- -------------- 1 -99 ' ' 7 F ' ' 1 2 -99 ' ' 9 F ' ' 4 3 -99 ' ' 8 F ' ' 3 4 -99 ' ' 9 F ' ' 4 5 -99 ' ' 7 F ' ' 2 6 -99 ' ' 6 F ' ' 1 7 ' ' ' ' 5 I I 0 $END $REMARKS This file converted from Sea-Bird file: P:\Cruise_Data_Processing\2012-50\Pro $END *ADMINISTRATION MISSION : 2012-50 AGENCY : PBS, Salmon And Freshwater Ecosystems, Nanaimo, B.C. COUNTRY : Canada PROJECT : High Seas Salmon SCIENTIST : Thiess M. PLATFORM : W.E. Ricker *LOCATION GEOGRAPHIC AREA : WCVI / QCSound / QCStrait STATION : QCST03 EVENT NUMBER : 346 LATITUDE : 50 57.76000 N ! (deg min) LONGITUDE : 127 33.28000 W ! (deg min) *INSTRUMENT TYPE : Sea-Bird CTD MODEL : SBE-911plus SERIAL NUMBER : 0443 $REMARKS SOFTWARE VERSION SEASAVE V 7.21D $END *HISTORY $TABLE: PROGRAMS ! Name Vers Date Time Recs In Recs Out ! ------------------------ ------ ---------- -------- --------- --------- SBE_IOS 3.1.2 2012/12/11 10:40:44 8997 8997 CLEAN 5.0.4 2012/12/11 10:42:41 8997 8997 SHIFTDAT 3.4 2012/12/11 11:19:41 8997 8997 SHIFTDAT 3.4 2012/12/11 11:49:12 8997 8997 SHIFTDAT 3.4 2012/12/11 11:54:48 8997 8997 DELETE 6.3 2012/12/11 16:01:19 8997 3391 CTDEDIT 4.61 2012/12/12 17:22:08 3391 3319 CALIB 11.7 2012/12/13 13:32:33 3319 3319 FILTERS 4.3 2012/12/13 13:33:17 3319 3319 BINAVE 4.1.1 2012/12/13 13:33:56 3319 103 REMOVECH 8.1.1 2012/12/13 13:34:33 103 103 CHGUNITS 3.0 2012/12/13 13:37:20 103 103 REORDER 1.3 2012/12/13 13:38:44 ? ? HDREDIT2 2.5.1 2012/12/13 17:07:24 ? ? CHANGE_CTD_CHANNEL_NAMES 1.0 2013/12/16 15:38:32 103 103 $END $REMARKS -CLEAN functions: 2012/12/11 10:42:29 20 Interpolation by Record Number, in Pressure Set event to last 4 characters of file name -The following SHIFT parameters were used. Shift Channel: Fluorescence:Wetlabs:ECO-AFL # of Records to Advance (-ve for Delay): At REC# 0 Shift= 12.00 -The following SHIFT parameters were used. Shift Channel: Conductivity:Primary # of Records to Advance (-ve for Delay): At REC# 0 Shift= -0.50 Salinity was recalculated after shift -The following SHIFT parameters were used. Shift Channel: Conductivity:Secondary # of Records to Advance (-ve for Delay): At REC# 0 Shift= -0.50 Salinity was recalculated after shift -The following DELETE parameters were used: Surface Record Removal: Last Press Min Maximum Surface Pressure (relative): 10.00 Surface Swell Pressure Tolerance: 1.00 Pressure filtered over width: 15 Swells deleted. Warning message if pressure difference of 2.00 Drop rates < 0.30m/s (calculated over 11 points) will be deleted. Drop rate applies in the range 10.00 to 95.73 dbars Sample interval (from FILE section of header) = 0.042 seconds. -CTDEDIT 2012/12/12 17:22:08 72 records were deleted in this editing session. 49 changes in channel Salinity:T0:C0 -CALIB parameters: 2012/12/13 13:32:33 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = P:\Cruise_Data_Processing\2012-50\Processing\doc\2012-50-recal1.CCF Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 13 Oxygen:Dissolved:SBE mL/L 10 0.4800000E-01 0.1000000E+01 -The following FILTER parameters were used. Median filter was used. Filter width = 11 The following channel(s) were filtered. Fluorescence:Wetlabs:ECO-AFL Fluorescence:Seapoint -The following BINAVE parameters were used: Bin channel = Pressure Averaging interval = 1.00 Minimum bin value = 0.000 Average value was used Interpolated values were NOT used for empty bins Channel 'NUMBER_OF_BIN_RECORDS' was added to file. -REMOVECH 2012/12/13 13:34:33 The following CHANNEL(S) were removed: Scan_Number Temperature:Secondary [deg C (ITS90)] Conductivity:Primary [S/m] Conductivity:Secondary [S/m] Oxygen:Voltage:SBE [volts] Descent_Rate [m/s] Status:Pump Salinity:T1:C1 [PSS-78] Flag -CHANGE units: 'Oxygen:Dissolved:SBE [mL/L]' changed from mL/L to umol/kg -HEADER EDITS: 2012/12/13 17:07:24 Applied edit header: P:\Cruise_Data_Processing\2012-50\Processing\doc\2012-50-HDR-911.TXT Channel 1: Pressure [decibar] Units: dbars ==> decibar Format: F10.3 ==> F7.1 Channel 3: Fluorescence:URU:Wetlabs [mg/m^3] Name: Fluorescence:Wetlabs:ECO-AFL ==> Fluorescence:URU:Wetlabs Channel 4: Salinity:Practical:T0:C0 [PSS-78] Name: Salinity:T0:C0 ==> Salinity:Practical:T0:C0 Channel 5: Oxygen:Dissolved:SBE [mL/L] Format: F8.3 ==> F7.2 $END *COMMENTS SBE HEADER Sea-Bird SBE 9 Data File: FileName = C:\Data\2012-50\2012-50-0346.hex Software Version Seasave V 7.21d Temperature SN = 2106 Conductivity SN = 1764 Number of Bytes Per Scan = 37 Number of Voltage Words = 4 Number of Scans Averaged by the Deck Unit = 1 System UpLoad Time = Jul 12 2012 19:33:28 NMEA Latitude = 50 57.76 N NMEA Longitude = 127 33.28 W NMEA UTC (Time) = Jul 12 2012 19:34:05 Store Lat/Lon Data = Append to Every Scan SBE 11plus V 5.1e number of scans to average = 1 pressure baud rate = 9600 NMEA baud rate = 4800 Latitude/Longitude added to scan GPIB address = 1 advance primary conductivity 0.073 seconds advance secondary conductivity 0.073 seconds S> Ricker 2012-50 Station: QCST03 Depth(m): 113m System UTC = Jul 12 2012 18:33:28 # nquan = 14 # nvalues = 8997 # units = specified # name 0 = scan: Scan Count # name 1 = prDM: Pressure, Digiquartz [db] # name 2 = t090C: Temperature [ITS-90, deg C] # name 3 = t190C: Temperature, 2 [ITS-90, deg C] # name 4 = c0S/m: Conductivity [S/m] # name 5 = c1S/m: Conductivity, 2 [S/m] # name 6 = flECO-AFL: Fluorescence, WET Labs ECO-AFL/FL [mg/m^3] # name 7 = sbeox0V: Oxygen raw, SBE 43 [V] # name 8 = dz/dtM: Descent Rate [m/s] # name 9 = pumps: Pump Status # name 10 = sal00: Salinity, Practical [PSU] # name 11 = sal11: Salinity, Practical, 2 [PSU] # name 12 = sbeox0ML/L: Oxygen, SBE 43 [ml/l], WS = 2 # name 13 = flag: flag # span 0 = 1, 8997 # span 1 = 2.448, 105.732 # span 2 = 6.9887, 9.9707 # span 3 = 6.9881, 9.9681 # span 4 = 3.336557, 3.401703 # span 5 = 3.336608, 3.401605 # span 6 = 0.0957, 14.3020 # span 7 = 1.3980, 2.4603 # span 8 = -1.074, 1.481 # span 9 = 0, 1 # span 10 = 30.8792, 33.1446 # span 11 = 30.8722, 33.1447 # span 12 = 3.05723, 6.30414 # span 13 = 0.0000e+00, 0.0000e+00 # interval = seconds: 0.0416667 # start_time = Jul 12 2012 19:34:05 [NMEA time, header] # bad_flag = -9.990e-29 # # # # # 2106 # 01-Apr-11 # 1 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.000 # 4.14706003e-003 # 6.31100076e-004 # 2.13431760e-005 # 2.18854475e-006 # 1000.000 # 1.00000000 # 0.0000 # # # # # # 1764 # 29-Mar-11 # 1 # # 0.0000 # 2000.0000 # 0 # # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.0 # -9.57000000e-008 # # # -4.15464915e+000 # 4.87579437e-001 # -6.56660246e-004 # 5.55755549e-005 # -9.57000000e-008 # 3.2500e-006 # # 0.00000000e+000 # # 1.00000000 # 0.00000 # # # # # # 63507 # 12-Apr-11 # -4.435468e+004 # -1.845750e-001 # 1.192740e-002 # 3.979900e-002 # 0.000000e+000 # 2.993572e+001 # -3.336200e-004 # 3.759160e-006 # 1.565300e-009 # 0.99986626 # 5.62145 # 0.000000e+000 # 1.283280e-002 # -9.295010e+000 # # # # # # 2710 # 01-Apr-11 # 1 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.000 # 4.36717391e-003 # 6.46683268e-004 # 2.34981097e-005 # 2.22352352e-006 # 1000.000 # 1.00000000 # 0.0000 # # # # # # 2128 # 29-Mar-11 # 1 # # 0.0000 # 2000.0000 # 0 # # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.0 # -9.57000000e-008 # # # -1.01926507e+001 # 1.46093888e+000 # -2.51557628e-003 # 2.74924248e-004 # -9.57000000e-008 # 3.2500e-006 # # 0.00000000e+000 # # 1.00000000 # 0.00000 # # # # # # # # # # # # # # # # # # # # # # # # 0997 # 23-Apr-11p # 1 # # # 0.0000 # 0.0000e+000 # 0.0000 # 0.00e+000 # 0.0000 # 0.0 # # # # 4.8010e-001 # -0.4816 # 1.4264e-003 # 2.8936e-005 # -9.0212e-007 # 2.5826e+000 # 1.92630e-004 # -4.64800e-002 # 3.6000e-002 # 1.5600 #

-3.3000e-002

#

5.0000e+003

#

1.4500e+003

# # # # # # # 2216 # June 2012 # 1.30000000e+001 # # 0.0427 # # # # datcnv_date = Dec 10 2012 17:13:26, 7.21d [datcnv_vars = 10] # datcnv_in = P:\Cruise_Data_Processing\2012-50\RAW\CTD\SBE911_12JUL_no_pH\2012- 50-0346.hex P:\Cruise_Data_Processing\2012-50\Processing\doc\2012-50-SBE911-noph-new.xmlcon # datcnv_skipover = 0 # datcnv_ox_hysteresis_correction = no # wildedit_date = Dec 11 2012 09:07:53, 7.21d # wildedit_in = P:\Cruise_Data_Processing\2012-50\Processing\convert\2012-50-034 6.cnv # wildedit_pass1_nstd = 2.0 # wildedit_pass2_nstd = 5.0 # wildedit_pass2_mindelta = 0.000e+000 # wildedit_npoint = 50 # wildedit_vars = prDM t090C t190C c0S/m c1S/m # wildedit_excl_bad_scans = yes # alignctd_date = Dec 11 2012 09:09:59, 7.21d # alignctd_in = P:\Cruise_Data_Processing\2012-50\Processing\wildedit\2012-50-03 46.cnv # alignctd_adv = sbeox0V 4.000 # celltm_date = Dec 11 2012 09:49:03, 7.21d # celltm_in = P:\Cruise_Data_Processing\2012-50\Processing\align\2012-50-0346.cn v # celltm_alpha = 0.0300, 0.0300 # celltm_tau = 9.0000, 9.0000 # celltm_temp_sensor_use_for_cond = primary, secondary # Derive_date = Dec 11 2012 09:50:11, 7.21d [derive_vars = 3] # Derive_in = P:\Cruise_Data_Processing\2012-50\Processing\celltm\2012-50-0346.c nv P:\Cruise_Data_Processing\2012-50\Processing\doc\2012-50-SBE911-noph-new.xmlcon # derive_time_window_docdt = seconds: 2 # derive_ox_tau_correction = yes # file_type = ascii END* CTDEDIT was used to remove a few records corrupted by shed wakes near the top and bottom of the cast; salinity was near the surface. Data Processing Notes: ---------------------- The fluorescence data are nominal and unedited except that some records were removed in editing temperature and salinity. There was no Dissolved Oxygen sampling, so no estimate is made of accuracy. Recalibration was based on results of cruise 2012-01. It is likely that there has been some drift since then which usually results in values that are low by a few %. Salinity samples were stored for 4 months before they were analyzed. Based on recent cruises using the same types of bottle inserts, it appears that significant evaporation occurs after 2 months, and that by 4 months bottle values are likely to read high by an average of >0.01. Furthermore, all but one sample came from 10db where the salinity gradients were high, making the comparison even less suitable for recalibration of salinity. The last good calibration of the salinity from these sensors came from cruise 2012-01 in Feb. 2012 and showed the primary salinity to be very close to bottle values. A pH sensor was attached to the CTD for casts #355 to #409, but the data are not included in the files to be placed in the IOS Data Library because no field calibration information was available at the time of processing, and there are some concerns about how the sensors perform. For details on the processing see the report: 2012-50-proc.doc. *CALIBRATION $TABLE: CORRECTED CHANNELS ! Name Units Fmla Pad Coefficients ! ---------------------- ------ ---- ------ ------------ Oxygen:Dissolved:SBE mL/L 10 -99 () (0.48E-01 1) $END !--1--- ---2---- ---3--- ---4---- --5--- --6-- -7-- !Pressu Temperat Fluores Salinity Oxygen Oxyge Numb !re ure: cence: :T0:C0 : n: er_o ! Primary URU: Dissol Disso ~bin ! Wetlabs ved: lved: _rec ! SBE SBE ords !------ -------- ------- -------- ------ ----- ---- *END OF HEADER 3.2 9.9115 2.080 30.8933 6.28 273.9 5 4.0 9.9147 2.115 30.8946 6.29 274.4 17 5.1 9.9312 1.943 30.8935 6.29 274.2 24 6.0 9.9422 1.826 30.8944 6.27 273.3 34 7.0 9.9463 1.725 30.8950 6.25 272.4 39 8.0 9.8850 2.004 30.8949 6.28 273.6 28 9.0 9.7087 3.338 30.8934 6.27 273.5 37 10.0 9.6415 5.610 30.8924 6.25 272.5 40 11.0 9.6244 6.360 30.8958 6.19 269.9 33 12.0 9.5949 6.205 30.8971 6.15 268.3 31 13.0 9.5427 5.978 30.8971 6.14 267.6 37 14.0 9.5336 5.698 30.8980 6.10 265.8 41 15.0 9.5261 5.279 30.9001 6.07 264.7 31 16.0 9.5281 5.048 30.9024 6.05 263.9 24 17.0 9.5224 5.191 30.9044 6.03 262.9 43 18.0 9.5214 5.198 30.9073 5.96 259.9 34 19.0 9.5289 5.361 30.9214 5.80 252.8 30 20.0 9.5194 4.729 30.9477 5.68 247.8 28 21.0 9.2376 3.586 31.0459 5.64 246.1 38 22.0 9.1909 3.383 31.0689 5.59 243.9 35 23.0 9.1569 3.205 31.1026 5.51 240.3 33 24.0 9.0975 2.767 31.1398 5.46 237.9 31 25.0 9.0308 2.325 31.1805 5.43 236.6 32 26.0 8.9999 2.289 31.2018 5.37 234.1 38 27.0 8.9701 2.309 31.2132 5.25 228.9 33 28.0 8.9269 1.991 31.2415 5.10 222.5 28 29.0 8.7945 1.689 31.3211 5.01 218.4 33 30.0 8.6615 1.365 31.3988 4.94 215.3 39 31.0 8.5867 1.200 31.4450 4.91 214.0 33 32.0 8.5520 1.136 31.4644 4.89 213.3 32 33.0 8.5395 1.095 31.4694 4.85 211.4 36 34.0 8.5266 1.060 31.4747 4.77 208.0 31 35.0 8.4947 0.976 31.4892 4.72 205.6 23 36.0 8.4042 0.857 31.6021 4.67 203.4 36 37.0 8.3734 0.802 31.6384 4.62 201.5 37 38.0 8.3273 0.749 31.6961 4.60 200.3 31 39.0 8.3108 0.702 31.7142 4.57 199.1 30 40.0 8.2848 0.665 31.7441 4.52 197.1 33 41.0 8.2550 0.654 31.7801 4.48 195.0 36 42.0 8.2142 0.656 31.8295 4.44 193.6 33 43.0 8.1874 0.581 31.8616 4.41 192.3 26 44.0 8.1786 0.589 31.8723 4.39 191.3 28 45.0 8.1531 0.578 31.9005 4.34 188.8 37 46.0 8.1293 0.599 31.9260 4.26 185.6 35 47.0 8.0662 0.530 32.0055 4.22 184.0 23 48.0 8.0226 0.494 32.0647 4.21 183.4 21 49.0 8.0023 0.474 32.0893 4.18 182.3 40 50.0 7.9915 0.454 32.1017 4.15 180.6 36 51.0 7.9524 0.425 32.1509 4.13 179.8 22 52.0 7.9428 0.425 32.1626 4.12 179.6 29 53.0 7.9270 0.431 32.1883 4.11 179.1 27 54.0 7.9250 0.394 32.1917 4.09 178.2 32 55.0 7.9143 0.395 32.2104 4.06 176.9 28 56.0 7.8935 0.372 32.2329 4.04 175.9 30 57.0 7.8772 0.396 32.2516 4.02 174.9 31 58.0 7.8473 0.334 32.2881 3.99 173.6 34 59.0 7.8322 0.335 32.3060 3.96 172.4 29 60.0 7.8033 0.358 32.3405 3.94 171.4 29 61.0 7.7859 0.317 32.3608 3.89 169.5 34 62.0 7.7689 0.359 32.3815 3.84 167.0 31 63.0 7.7119 0.314 32.4466 3.82 166.2 27 64.0 7.6786 0.289 32.4813 3.81 165.8 32 65.0 7.6709 0.302 32.4892 3.80 165.6 32 66.0 7.6633 0.344 32.4992 3.80 165.4 29 67.0 7.6610 0.301 32.5038 3.79 165.1 24 68.0 7.6588 0.280 32.5082 3.78 164.5 30 69.0 7.6525 0.297 32.5174 3.76 163.8 42 70.0 7.6227 0.288 32.5555 3.75 163.4 27 71.0 7.6140 0.291 32.5649 3.76 163.5 23 72.0 7.6118 0.288 32.5681 3.76 163.5 32 73.0 7.6127 0.294 32.5717 3.74 163.0 35 74.0 7.6141 0.258 32.5738 3.71 161.5 27 75.0 7.5944 0.266 32.5952 3.66 159.3 28 76.0 7.5585 0.272 32.6267 3.61 157.1 37 77.0 7.4872 0.244 32.6909 3.59 156.4 29 78.0 7.4616 0.246 32.7179 3.59 156.2 26 79.0 7.4608 0.248 32.7188 3.59 156.1 36 80.0 7.4558 0.238 32.7235 3.58 155.8 37 81.0 7.4494 0.235 32.7295 3.57 155.4 27 82.0 7.4410 0.245 32.7377 3.57 155.4 28 83.0 7.4363 0.255 32.7428 3.56 155.0 32 84.0 7.4303 0.249 32.7486 3.54 154.2 33 85.0 7.4245 0.217 32.7541 3.53 153.8 32 86.0 7.4093 0.235 32.7685 3.52 153.4 35 87.0 7.3997 0.236 32.7772 3.52 153.0 30 88.0 7.3953 0.243 32.7813 3.51 152.6 29 89.0 7.3830 0.241 32.7919 3.50 152.2 35 90.0 7.3792 0.234 32.7953 3.49 151.9 34 91.0 7.3746 0.231 32.7993 3.48 151.5 32 92.0 7.3677 0.208 32.8057 3.47 151.2 33 93.0 7.3601 0.226 32.8125 3.47 151.2 33 94.0 7.3562 0.230 32.8160 3.47 150.9 34 95.0 7.3555 0.237 32.8167 3.46 150.8 31 96.0 7.3555 0.218 32.8169 3.46 150.8 33 97.0 7.3559 0.227 32.8167 3.46 150.7 39 98.0 7.3526 0.231 32.8196 3.46 150.6 35 99.0 7.3535 0.203 32.8188 3.46 150.5 40 100.0 7.3467 0.243 32.8248 3.43 149.4 37 101.0 7.3400 0.240 32.8309 3.38 147.3 33 102.0 7.2969 0.232 32.8698 3.34 145.3 28 103.0 7.2657 0.209 32.8973 3.24 141.1 30 104.0 7.2535 0.219 32.9087 3.16 137.4 26 105.0 7.0567 0.201 33.0844 3.14 136.5 27