*2014/11/20 09:58:02.36 *IOS HEADER VERSION 1.10 2011/10/26 2011/10/26 *FILE START TIME : UTC 2012/09/21 22:11:15.000 TIME INCREMENT : 0 0 0 0.416667E-01 0 ! (day hr min sec ms) NUMBER OF RECORDS : 13 DATA DESCRIPTION : Bottle:Rosette:Up:Stop + CTD:Up FILE TYPE : ASCII CRC : 15FA6690 NUMBER OF CHANNELS : 29 $TABLE: CHANNELS ! No Name Units Minimum Maximum !--- ---------------------------- --------------- -------------- -------------- 1 Bottle:Firing_Sequence n/a 1 13 2 Bottle_Number n/a 1 14 3 Pressure decibar 1.751 177.809 4 Temperature:Secondary 'deg C (ITS90)' 9.3395 14.6591 5 Transmissivity %/metre 24 57.4 6 Fluorescence:URU:Seapoint mg/m^3 0.144 2.07 7 Fluorescence:URU:Wetlabs mg/m^3 0.191 3.837 8 PAR uE/m^2/sec 0 802.664 9 PAR:Reference uE/m^2/sec 249.88 255.248 10 Salinity:T1:C1 PSS-78 25.5281 30.9376 11 Oxygen:Dissolved:SBE mL/L 3.238 7.211 12 Oxygen:Dissolved:SBE umol/kg 141.2 316 13 Number_of_bin_records n/a 121 121 14 Sample_Number n/a 122 133 15 Temperature:Draw 'deg C (ITS90)' 9.7 14.9 16 Salinity:Bottle PSS-78 30.8967 30.8967 17 Flag:Salinity:Bottle n/a 18 Chlorophyll:Extracted mg/m^3 1.02 2.61 19 Flag:Chlorophyll:Extracted n/a 20 Phaeo-Pigment:Extracted mg/m^3 0.72 1.04 21 Oxygen:Dissolved mL/L 3.208 7.199 22 Oxygen:Dissolved umol/kg 139.8853 315.4829 23 Flag:Oxygen:Dissolved n/a 24 Nitrate_plus_Nitrite umol/L 1.9 27.8 25 Flag:Nitrate_plus_Nitrite n/a 26 Silicate umol/L 17.9 49 27 Flag:Silicate n/a 28 Phosphate umol/L 0.46 2.32 29 Flag:Phosphate n/a $END $TABLE: CHANNEL DETAIL ! No Pad Start Width Format Type Decimal_Places !--- ---- ----- ----- ------ ---- -------------- 1 -99 ' ' 3 I I 0 2 -99 ' ' 3 I I 0 3 -99 ' ' 7 F ' ' 1 4 -99 ' ' 9 F ' ' 4 5 -99 ' ' 6 F ' ' 1 6 -99 ' ' 8 F ' ' 3 7 -99 ' ' 8 F ' ' 3 8 -99 ' ' 7 F ' ' 1 9 -99 ' ' 7 F ' ' 1 10 -99 ' ' 9 F ' ' 4 11 -99 ' ' 7 F ' ' 2 12 -99 ' ' 6 F ' ' 1 13 ' ' ' ' 5 I I 0 14 -99 ' ' 5 I I 0 15 -99 ' ' 5 F R4 1 16 -99 ' ' 9 F R4 4 17 0 ' ' 3 NQ C ' ' 18 -99 ' ' 7 F R4 2 19 0 ' ' 3 NQ C ' ' 20 -99 ' ' 7 F R4 2 21 -99 ' ' 8 F R4 3 22 -99 ' ' 6 F ' ' 1 23 0 ' ' 3 NQ C ' ' 24 -99 ' ' 6 F R4 1 25 0 ' ' 3 NQ C ' ' 26 -99 ' ' 6 F R4 1 27 0 ' ' 3 NQ C ' ' 28 -99 ' ' 7 F R4 2 29 0 ' ' 3 NQ C ' ' $END $REMARKS Flag channels initialized with zeros. Non-zero values have the following significance: -------------------------------------------------------------------------------------- 1 = Sample for this measurement was drawn from water bottle but not analyzed (not normally used). 2 = Acceptable measurement (not normally used). 3 = Questionable measurement (no problem observed in sampling or analysis, but value is not trusted, nonetheless; includes outlyers). 4 = Bad measurement (known problem with sampling or analysis, but not serious enough to completely discard the value). 5 = Not reported (lost sample; unredeemably bad measurement). 6 = Mean of replicate measurements. 7 = Manual chromatographic peak measurement. 8 = Irregular digital chromatographic peak integration. 9 = Sample not drawn for this measurement from this bottle (not normally used). -------------------------------------------------------------------------------------- $END *ADMINISTRATION MISSION : 2012-06 AGENCY : IOS, Ocean Sciences Division, Sidney, B.C. COUNTRY : Canada PROJECT : SoG/JdF SCIENTIST : Chandler P. PLATFORM : Vector *LOCATION GEOGRAPHIC AREA : Strait of Georgia & Juan de Fuca Strait STATION : 46 EVENT NUMBER : 39 LATITUDE : 48 51.43000 N ! (deg min) LONGITUDE : 123 10.90000 W ! (deg min) WATER DEPTH : 177 ALTIMETER (M) : 4.98 ! custom item $REMARKS Altimeter value is distance from bottom and is calculated as the median of the deepest 2 metres of data. $END *INSTRUMENT TYPE : Sea-Bird CTD MODEL : SBE-911plus SERIAL NUMBER : 0506 $REMARKS SOFTWARE VERSION SEASAVE V 7.21G $END *HISTORY $TABLE: PROGRAMS ! Name Vers Date Time Recs In Recs Out ! ------------------------ ------ ---------- -------- --------- --------- SBE_IOS 3.1.2 2013/02/26 17:16:16 1573 1573 CLEAN 5.1 2013/02/26 17:18:39 1573 1573 ADDSAMP 3.5 2013/02/26 17:49:40 1573 1573 BINAVE 4.1.1 2013/02/26 17:53:58 1573 13 MERGE 3.4 2013/02/28 10:06:29 13 13 CLEAN 5.1 2013/02/28 10:06:35 ? ? CALIB 11.7 2013/02/28 10:06:58 13 13 SORT 3.6 2013/03/02 17:21:23 13 13 REMOVECH 8.1.1 2013/03/02 17:22:50 13 13 CHGUNITS 3.0 2013/03/02 17:23:27 13 13 CHGUNITS 3.0 2013/03/02 17:24:02 13 13 REORDER 1.3 2013/03/02 17:24:35 ? ? HDREDIT2 2.6 2013/03/04 08:34:58 ? ? CHANGE_CTD_CHANNEL_NAMES 1.0 2013/12/16 15:37:21 13 13 CHANGE_FLAGS 2.0 2014/11/20 09:58:02 13 13 $END $REMARKS -CLEAN functions: 2013/02/26 17:18:33 20 Interpolation by Channel 1: Scan_Number [n/a] in Pressure Set event to last 4 characters of file name -The following ADDSAMP parameters were used: Sample Number Lookup File: P:\Cruise_Data_Processing\2012-06\Processing\hydro\addsamp.csv Bottle Channel Name: Bottle_Number -The following BINAVE parameters were used: Bin channel = Bottle_Number Averaging interval = 1.00 Minimum bin value = 0.000 Average value was used Interpolated values were NOT used for empty bins Channel 'NUMBER_OF_BIN_RECORDS' was added to file. -The following MERGE parameters were used: 2013/02/28 10:06:29 2013/02/28 10:06:29 2013/02/28 10:06: Merge Channel: Bottle_Number Merge Scheme Used: Add Secondary to Primary Overlap Scheme Used: Keep Primary Primary Channels to Include: ALL Secondary Channels to Include: Event_Number, Bottle:Position, Salinity:Bottle, Flag:Salinity:Bottle, Chlorophyll:Extracted, Flag:Chlorophyll:Extracted, Phaeo-Pigment:Extracted, Oxygen:Dissolved, Flag:Oxygen:Dissolved, Temperature:Draw, Nitrate_plus_Nitrite, Flag:Nitrate_plus_Nitrite, Silicate, Flag:Silicate, Phosphate, Flag:Phosphate, Ammonium, Flag:Ammonium, pH, Flag:pH, Dimethyl_Sulphide, Flag:Dimethyl_Sulphide Primary file : P:\Cruise_Data_Processing\2012-06\Processing\hydro\2012-06-0039.samavg Secondary file: P:\Cruise_Data_Processing\2012-06\Processing\hydro\2012-06-0039.mrgcln1s -SORT parameters: 2013/02/28 10:06:15 Sorted in ascending order of channel Bottle_Number -CLEAN functions: 2013/02/28 10:06:34 20 Remove Sea-Bird comments from the header. Remove remark heading: "Comments from secondary" -CALIB parameters: 2013/02/28 10:06:58 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = P:\Cruise_Data_Processing\2012-06\Processing\doc\2012-06-recal1.ccf Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 21 Oxygen:Dissolved:SBE mL/L 10 0.1380000E-01 0.1046400E+01 -SORT parameters: 2013/03/02 17:21:23 Sorted in ascending order of channel Pressure -REMOVECH 2013/03/02 17:22:50 The following CHANNEL(S) were removed: Scan_Number Temperature:Primary [deg C (ITS90)] Conductivity:Primary [S/m] Conductivity:Secondary [S/m] Oxygen:Voltage:SBE [volts] pH:SBE [pH Units] Altimeter [metres] Status:Pump Descent_Rate [m/s] Salinity:T0:C0 [PSS-78] Flag -CHANGE units: 'Oxygen:Dissolved:SBE' changed from mL/L to umol/kg -CHANGE units: 'Oxygen:Dissolved' changed from mL/L to umol/kg -HEADER EDITS: 2013/03/04 08:34:58 Applied edit header: P:\Cruise_Data_Processing\2012-06\Processing\doc\2012-06-bot-hdr.txt Channel 1: Bottle:Firing_Sequence [n/a] Name: Bottle_Number ==> Bottle:Firing_Sequence Channel 2: Bottle_Number [n/a] Name: Bottle:Position ==> Bottle_Number Channel 3: Pressure [decibar] Units: dbars ==> decibar Format: F10.3 ==> F7.1 Channel 7: Fluorescence:URU:Wetlabs [mg/m^3] Name: Fluorescence:Wetlabs:ECO-AFL ==> Fluorescence:URU:Wetlabs Channel 8: PAR [uE/m^2/sec] Format: F11.3 ==> F7.1 Channel 10: Salinity:Practical:T1:C1 [PSS-78] Name: Salinity:T1:C1 ==> Salinity:Practical:T1:C1 Channel 11: Oxygen:Dissolved:SBE [mL/L] Format: F8.3 ==> F7.2 Channel 15: Temperature:Draw [deg C (ITS90)] Units: ==> deg C (ITS90) Format: F7.2 ==> F5.1 Channel 16: Salinity:Bottle [PSS-78] Units: ==> PSS-78 Channel 17: Flag:Salinity:Bottle [n/a] Units: ==> n/a Channel 18: Chlorophyll:Extracted [mg/m^3] Units: ==> mg/m^3 Channel 19: Flag:Chlorophyll:Extracted [n/a] Units: ==> n/a Channel 20: Phaeo-Pigment:Extracted [mg/m^3] Units: ==> mg/m^3 Channel 21: Oxygen:Dissolved [mL/L] Units: ==> mL/L Channel 23: Flag:Oxygen:Dissolved [n/a] Units: ==> n/a Channel 24: Nitrate_plus_Nitrite [umol/L] Units: ==> umol/L Channel 25: Flag:Nitrate_plus_Nitrite [n/a] Units: ==> n/a Channel 26: Silicate [umol/L] Units: ==> umol/L Channel 27: Flag:Silicate [n/a] Units: ==> n/a Channel 28: Phosphate [umol/L] Units: ==> umol/L Channel 29: Flag:Phosphate [n/a] Units: ==> n/a Channel 9: PAR:Reference [uE/m^2/sec] Format: F11.3 ==> F7.1 Channel 6: Fluorescence:URU:Seapoint [mg/m^3] Name: Fluorescence:Seapoint ==> Fluorescence:URU:Seapoint $END *COMMENTS Sample_Number 130: CHL-variability of reps >15% Sample_Number 131: CHL-variability of reps >15% Sample_Number 133: CHL-variability of reps >15% Sample_Number 132: OXY-2: Niskin top cap was leaking. Jiggled to seal it. Analysis methods: ----------------- Chlorophyll samples were filtered onto 25mm GF/F filters and stored in glass scintillation vials at -20C prior to analysis. Samples were extracted in 90% acetone at -20C for 24 hours in the lab and analyzed on a Turner 10AU fluorometer which is calibrated annually with commercially pure chlorophyll a (Sigma). Fluorescence readings taken before and after acidification were used to calculate chlorophyll and phaeopigment concentrations (Holm-Hansen et al 1965). Chlorophyll samples were analyzed on board ship in a controlled temperature lab. The average of two samples is reported. Variability is assessed as the CV% (std dev / mean*100). For details see worksheet “CV%” in file QF2012-06CHL*.xls. Phaeopigment data are provided for information only and no quality flags are assigned to them. Oxygen samples were analyzed at sea on an automated Winkler titration system (Brinkmann Dosimat model 765 and a PC950 Colorimeter controlled by AutoOxy software V3.4) with modifications based on Carpenter (1965) and adhering to WOCE protocols (Culberson 1991). For details including a duplicate analysis, see document QF2012-06oxy*.xls. Salinity samples were collected in 200 mL type ll glass bottles with reusable silicone inserts supplied by Xiamen Cuten Accessories Industry Limited and screw caps supplied by Ocean Scientific International Limited. They were analyzed in a temperature-controlled lab on a Guildline 8400B Salinometer (S/N 68572) standardized with IAPSO standard seawater 1.5 months after collection. Full details are in file QF2012-06sal*.xls. Nutrient samples were collected in plastic tubes and quick frozen in aluminum blocks stored in a -20C freezer and anlayzed later at the Institute of Ocean Sciences using an Astoria analyzer following methods described in Barwell-Clarke and Whitney (1996). File QF2012-06nuts*.xls includes the raw data and a precision study. References: 1. Barwell-Clarke, J. and Whitney, F. 1996. Institute of Ocean Sciences Nutrient Methods and Analysis. Canadian Technical Report of Hydrography and Ocean Sciences, No. 182, 43 pp. 2. Carpenter, J.H. 1965. The Chesapeake Bay Institute Technique for the Winkler Dissolved Oxygen Method. Limmnol. & Oceanogr., 10: 141-143. 3. Culberson, C.H. 1991. Dissolved oxygen. WOCE Hydrographic Programme Operations and Methods (July 1991). 15pp. 4. Holm-Hansen, O., Lorenzen, C.J., Holmes, R.W., and Strickland J.D.H. 1965. Fluorometric Determination of Chlorophyll. J.du Cons. Intl. Pour l’Epl. De la Mer. 30:3-15. * For PDF versions of these papers see folder \\Cruise_Data\DOCUMENTS\Analysis Reference Papers Data Processing Notes: ---------------------- Transmissivity, fluorescence and PAR data are nominal and unedited except that some records were removed in editing temperature and salinity. The pH:SBE data have been removed because there was no field calibration information available at the time of processing. For details on how the transmissivity calibration parameters were calculated see the document in folder "\cruise_data\documents\transmissivity". Based on the recommendation from SeaBird, the method for calibration of Dissolved Oxygen concentration was changed from that used for 2011 and some 2012 cruises. For more information see the SeaBird Application NOte #64-2, June 2012 revision. It is not expected that this will make a significant difference in the results. For further processing details see the processing report 2012-06-proc.doc. *CALIBRATION $TABLE: CORRECTED CHANNELS ! Name Units Fmla Pad Coefficients ! ---------------------- ------ ---- ------ ------------ Oxygen:Dissolved:SBE mL/L 10 -99 () (0.138E-01 1.0464) $END !1- 2- --3--- ---4---- --5-- ---6--- ---7--- --8--- --9--- ---10--- --11-- --12- -13- -14- -15- ---16--- 17 --18-- 19 --20-- ---21-- --22- 23 --24- 25 --26- 27 --28-- 29 !Bo Bo Pressu Temperat Trans Fluores Fluores PAR PAR: Salinity Oxygen Oxyge Numb Samp Temp Salinity Fl Chloro Fl Phaeo- Oxygen: Oxyge Fl Nitra Fl Silic Fl Phosph Fl !tt tt re ure: missi cence: cence: Refere :T1:C1 : n: er_o le_ erat :Bottle ag phyll: ag Pigmen Dissolv n: ag te_ ag ate ag ate ag !~u ~u Secondar vity URU: URU: nce Dissol Disso ~bin Numb ure: ~o Extrac ~a t: ed Disso ~o plus_ ~t ~i ~p !en mb y Seapoin Wetlabs ved: lved: _rec er Draw tt ted ct Extrac lved lv Nitri ri ca ha !ce er t SBE SBE ords le ed ted ed te te te te !-- -- ------ -------- ----- ------- ------- ------ ------ -------- ------ ----- ---- ---- ---- -------- -- ------ -- ------ ------- ----- -- ----- -- ----- -- ------ -- *END OF HEADER 12 12 1.8 14.6591 48.9 0.971 1.524 754.9 249.9 25.5281 7.20 315.3 121 133 14.9 -99.0000 0 2.61 36 0.73 7.199 315.5 0 1.9 0 17.9 0 0.46 0 13 14 1.8 14.6249 49.3 1.066 1.614 802.7 249.9 25.5311 7.21 316.0 121 -99-99.0 -99.0000 0 -99.00 0 -99.00 -99.000 -99.0 0 -99.0 0 -99.0 0 -99.00 0 11 11 6.2 12.7583 45.4 2.070 3.837 164.4 253.6 27.1565 5.91 258.4 121 132 12.7 -99.0000 0 -99.00 0 -99.00 5.730 250.7 26 11.9 6 32.0 6 1.25 6 10 10 11.4 11.2331 53.6 0.985 1.647 44.0 254.2 28.3346 4.58 200.1 121 131 11.3 -99.0000 0 1.88 36 1.04 4.504 196.8 0 19.5 0 40.1 0 1.77 0 9 9 22.0 10.6793 57.4 0.433 0.698 7.2 253.8 28.9127 4.21 183.8 121 130 10.9 -99.0000 0 1.02 36 0.72 4.225 184.5 0 21.4 0 41.8 0 1.89 0 8 8 31.9 10.5476 54.8 0.517 0.836 1.3 253.1 29.3589 4.16 181.5 121 129 10.7 -99.0000 0 -99.00 0 -99.00 4.168 182.0 0 21.3 0 40.6 0 1.87 0 7 7 41.1 10.4082 54.2 0.489 0.732 0.3 251.2 29.4085 4.07 177.6 121 128 10.6 -99.0000 0 -99.00 0 -99.00 4.071 177.7 0 22.2 0 41.7 0 1.94 0 6 6 51.7 10.2364 53.8 0.416 0.629 0.1 253.7 29.4577 3.96 172.7 121 127 10.3 -99.0000 0 -99.00 0 -99.00 3.940 172.0 6 23.6 0 43.6 0 2.03 0 5 5 76.7 9.8081 51.6 0.263 0.408 0.0 252.2 29.7435 3.65 159.3 121 126 10.1 -99.0000 0 -99.00 0 -99.00 3.633 158.6 0 26.0 0 46.9 0 2.18 0 4 4 101.3 9.3395 52.2 0.144 0.191 0.0 252.6 30.3971 3.24 141.2 121 125 9.7 -99.0000 0 -99.00 0 -99.00 3.272 142.7 0 27.8 6 49.0 6 2.31 6 3 3 126.1 9.3935 36.5 0.271 0.420 0.0 252.8 30.7447 3.24 141.2 121 124 9.8 -99.0000 0 -99.00 0 -99.00 3.238 141.2 0 26.7 0 48.3 0 2.32 0 2 2 151.2 9.4394 27.7 0.421 0.838 0.0 255.2 30.8878 3.26 142.2 121 123 9.9 30.8967 0 -99.00 0 -99.00 3.262 142.2 0 26.2 0 46.7 0 2.24 0 1 1 177.8 9.4078 24.0 0.493 0.964 0.0 255.0 30.9376 3.25 141.5 121 122 9.9 -99.0000 0 -99.00 0 -99.00 3.208 139.9 0 26.4 0 46.8 0 2.25 0