*2014/11/20 09:58:00.36 *IOS HEADER VERSION 1.10 2011/10/26 2011/10/26 *FILE START TIME : UTC 2012/06/13 22:40:54.000 TIME INCREMENT : 0 0 0 0.416667E-01 0 ! (day hr min sec ms) NUMBER OF RECORDS : 9 DATA DESCRIPTION : Bottle:Rosette:Up:Stop + CTD:Up FILE TYPE : ASCII CRC : C23D443A NUMBER OF CHANNELS : 27 $TABLE: CHANNELS ! No Name Units Minimum Maximum !--- ---------------------------- --------------- -------------- -------------- 1 Bottle_Number n/a 1 9 2 Bottle:Firing_Sequence n/a 1 9 3 Pressure decibar 1.5 100.68 4 Temperature:Secondary 'deg C (ITS90)' 8.3773 11.9845 5 Transmissivity %/metre 6.1 56 6 Fluorescence:URU:Seapoint mg/m^3 0.68E-01 3.899 7 Fluorescence:URU:Wetlabs mg/m^3 0.2 10.656 8 Salinity:T1:C1 PSS-78 28.5752 30.7066 9 Oxygen:Dissolved:SBE mL/L 2.113 8.305 10 Oxygen:Dissolved:SBE umol/kg 92.1 362.9 11 Number_of_bin_records n/a 241 241 12 Sample_Number n/a 1 9 13 Temperature:Draw 'deg C (ITS90)' 8.7 12.1 14 Salinity:Bottle PSS-78 30.6094 30.6094 15 Flag:Salinity:Bottle n/a 16 Chlorophyll:Extracted mg/m^3 0.96 15.35 17 Flag:Chlorophyll:Extracted n/a 18 Phaeo-Pigment:Extracted mg/m^3 1.27 2.58 19 Oxygen:Dissolved mL/L 2.621 8.288 20 Oxygen:Dissolved umol/kg 114.2885 362.1814 21 Flag:Oxygen:Dissolved n/a 22 Nitrate_plus_Nitrite umol/L 2.3 26.8 23 Flag:Nitrate_plus_Nitrite n/a 24 Silicate umol/L 24.2 58.9 25 Flag:Silicate n/a 26 Phosphate umol/L 0.8 3 27 Flag:Phosphate n/a $END $TABLE: CHANNEL DETAIL ! No Pad Start Width Format Type Decimal_Places !--- ---- ----- ----- ------ ---- -------------- 1 -99 ' ' 3 I I 0 2 -99 ' ' 3 I I 0 3 -99 ' ' 7 F ' ' 1 4 -99 ' ' 9 F ' ' 4 5 -99 ' ' 6 F ' ' 1 6 -99 ' ' 8 F ' ' 3 7 -99 ' ' 8 F ' ' 3 8 -99 ' ' 9 F ' ' 4 9 -99 ' ' 7 F ' ' 2 10 -99 ' ' 6 F ' ' 1 11 ' ' ' ' 5 I I 0 12 -99 ' ' 5 I I 0 13 -99 ' ' 5 F R4 1 14 -99 ' ' 9 F R4 4 15 0 ' ' 3 NQ C ' ' 16 -99 ' ' 7 F R4 2 17 0 ' ' 3 NQ C ' ' 18 -99 ' ' 7 F R4 2 19 -99 ' ' 8 F R4 3 20 -99 ' ' 6 F ' ' 1 21 0 ' ' 3 NQ C ' ' 22 -99 ' ' 6 F R4 1 23 0 ' ' 3 NQ C ' ' 24 -99 ' ' 6 F R4 1 25 0 ' ' 3 NQ C ' ' 26 -99 ' ' 7 F R4 2 27 0 ' ' 3 NQ C ' ' $END $REMARKS Flag channels initialized with zeros. Non-zero values have the following significance: -------------------------------------------------------------------------------------- 1 = Sample for this measurement was drawn from water bottle but not analyzed (not normally used). 2 = Acceptable measurement (not normally used). 3 = Questionable measurement (no problem observed in sampling or analysis, but value is not trusted, nonetheless; includes outlyers). 4 = Bad measurement (known problem with sampling or analysis, but not serious enough to completely discard the value). 5 = Not reported (lost sample; unredeemably bad measurement). 6 = Mean of replicate measurements. 7 = Manual chromatographic peak measurement. 8 = Irregular digital chromatographic peak integration. 9 = Sample not drawn for this measurement from this bottle (not normally used). -------------------------------------------------------------------------------------- $END *ADMINISTRATION MISSION : 2012-05 AGENCY : IOS, Ocean Sciences Division, Sidney, B.C. COUNTRY : Canada PROJECT : Strait of Georgia SCIENTIST : Chandler P. PLATFORM : Vector *LOCATION GEOGRAPHIC AREA : Strait of Georgia STATION : SI EVENT NUMBER : 1 LATITUDE : 48 39.06000 N ! (deg min) LONGITUDE : 123 30.63000 W ! (deg min) WATER DEPTH : 184 *INSTRUMENT TYPE : Sea-Bird CTD MODEL : SBE-911plus SERIAL NUMBER : 0550 $REMARKS SOFTWARE VERSION SEASAVE V 7.21G $END *HISTORY $TABLE: PROGRAMS ! Name Vers Date Time Recs In Recs Out ! ------------------------ ------ ---------- -------- --------- --------- SBE_IOS 3.1.2 2012/11/08 11:51:51 2169 2169 CLEAN 5.0.4 2012/11/08 11:52:27 2169 2169 ADDSAMP 3.5 2012/11/08 11:54:10 2169 2169 BINAVE 4.1.1 2012/11/08 11:54:38 2169 9 MERGE 3.4 2012/11/19 11:46:04 9 9 CLEAN 5.0.4 2012/11/19 11:46:11 9 9 CALIB 11.7 2012/11/19 11:46:23 9 9 SORT 3.5 2012/11/19 11:46:29 9 9 REMOVECH 8.1.1 2012/11/19 11:47:05 9 9 CHGUNITS 3.0 2012/11/19 11:48:18 9 9 CHGUNITS 3.0 2012/11/19 11:48:59 9 9 REORDER 1.3 2012/11/19 11:49:27 ? ? HDREDIT2 2.5.1 2012/11/19 11:49:43 ? ? CHANGE_CTD_CHANNEL_NAMES 1.0 2013/12/16 15:37:15 9 9 CHANGE_FLAGS 2.0 2014/11/20 09:58:00 9 9 $END $REMARKS -CLEAN functions: 2012/11/08 11:52:27 Interpolation by Channel 1: Scan_Number [n/a] in Pressure Set event to last 4 characters of file name -The following ADDSAMP parameters were used: Sample Number Lookup File: P:\Cruise_Data_Processing\2012-05\Processing\hydro\addsamp.csv Bottle Channel Name: Bottle_Number -The following BINAVE parameters were used: Bin channel = Bottle_Number Averaging interval = 1.00 Minimum bin value = 0.000 Average value was used Interpolated values were NOT used for empty bins Channel 'NUMBER_OF_BIN_RECORDS' was added to file. -The following MERGE parameters were used: 2012/11/19 11:46:04 Merge Channel: Bottle_Number Merge Scheme Used: Add Secondary to Primary Overlap Scheme Used: Keep Primary Primary Channels to Include: ALL Secondary Channels to Include: Event_Number, Bottle:Position, Salinity:Bottle, Flag:Salinity:Bottle, Chlorophyll:Extracted, Flag:Chlorophyll:Extracted, Phaeo-Pigment:Extracted, Oxygen:Dissolved, Flag:Oxygen:Dissolved, Temperature:Draw, Nitrate_plus_Nitrite, Flag:Nitrate_plus_Nitrite, Silicate, Flag:Silicate, Phosphate, Flag:Phosphate, Ammonium, Flag:Ammonium, pH, Flag:pH, Dimethyl_Sulphide, Flag:Dimethyl_Sulphide Primary file : P:\Cruise_Data_Processing\2012-05\Processing\hydro\2012-05-0001.samavg Secondary file: P:\Cruise_Data_Processing\2012-05\Processing\hydro\2012-05-0001.mrgcln1s -SORT parameters: 2012/11/19 11:33:20 Sorted in ascending order of channel Bottle_Number -CLEAN functions: 2012/11/19 11:46:11 Reset #RECS, MIN & MAX values in header. Remove Sea-Bird comments from the header. Remove remark heading: "Comments from secondary" -CALIB parameters: 2012/11/19 11:46:23 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = P:\Cruise_Data_Processing\2012-05\Processing\doc\2012-05-recal1.ccf Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 3 Pressure dbars 10 0.5000000E+00 0.1000000E+01 19 Oxygen:Dissolved:SBE mL/L 10 0.0000000E+00 0.1070400E+01 -SORT parameters: 2012/11/19 11:46:29 Sorted in ascending order of channel Pressure [dbars] -REMOVECH 2012/11/19 11:47:05 The following CHANNEL(S) were removed: Scan_Number Temperature:Primary [deg C (ITS90)] Conductivity:Primary [S/m] Conductivity:Secondary [S/m] Oxygen:Voltage:SBE [volts] pH:SBE [pH Units] Altimeter [metres] Status:Pump Descent_Rate [m/s] Salinity:T0:C0 [PSS-78] Flag -CHANGE units: 'Oxygen:Dissolved:SBE' changed from mL/L to umol/kg -CHANGE units: 'Oxygen:Dissolved' changed from mL/L to umol/kg -HEADER EDITS: 2012/11/19 11:49:43 Applied edit header: P:\Cruise_Data_Processing\2012-05\Processing\doc\HYDRO\2012-05-bot-hdr.txt Channel 2: Bottle:Firing_Sequence [n/a] Name: Bottle_Number ==> Bottle:Firing_Sequence Channel 1: Bottle_Number [n/a] Name: Bottle:Position ==> Bottle_Number Channel 3: Pressure [decibar] Units: dbars ==> decibar Format: F11.2 ==> F7.1 Channel 7: Fluorescence:URU:Wetlabs [mg/m^3] Name: Fluorescence:Wetlabs:ECO-AFL ==> Fluorescence:URU:Wetlabs Channel 8: Salinity:Practical:T1:C1 [PSS-78] Name: Salinity:T1:C1 ==> Salinity:Practical:T1:C1 Channel 9: Oxygen:Dissolved:SBE [mL/L] Format: F8.3 ==> F7.2 Channel 13: Temperature:Draw [deg C (ITS90)] Units: ==> deg C (ITS90) Format: F7.2 ==> F5.1 Channel 14: Salinity:Bottle [PSS-78] Units: ==> PSS-78 Channel 15: Flag:Salinity:Bottle [n/a] Units: ==> n/a Channel 16: Chlorophyll:Extracted [mg/m^3] Units: ==> mg/m^3 Channel 17: Flag:Chlorophyll:Extracted [n/a] Units: ==> n/a Channel 18: Phaeo-Pigment:Extracted [mg/m^3] Units: ==> mg/m^3 Channel 19: Oxygen:Dissolved [mL/L] Units: ==> mL/L Channel 21: Flag:Oxygen:Dissolved [n/a] Units: ==> n/a Channel 22: Nitrate_plus_Nitrite [umol/L] Units: ==> umol/L Channel 23: Flag:Nitrate_plus_Nitrite [n/a] Units: ==> n/a Channel 24: Silicate [umol/L] Units: ==> umol/L Channel 25: Flag:Silicate [n/a] Units: ==> n/a Channel 26: Phosphate [umol/L] Units: ==> umol/L Channel 27: Flag:Phosphate [n/a] Units: ==> n/a Channel 6: Fluorescence:URU:Seapoint [mg/m^3] Name: Fluorescence:Seapoint ==> Fluorescence:URU:Seapoint $END *COMMENTS Sample_Number 1: OXY: Titration only to 94%. Over Titration only to 93 %. Sample not trusted even after recalculation. Major outlier in COMPARE, bottle low by 0.1mL/L. Sample_Number 2: OXY: Spigot open. Major outlier in COMPARE, bottle high by 0.2m/L. Sample_Number 5: OXY: Titration only to 91%. Recalculated value Sample_Number 7: OXY: Many small bubbles. Sample had many small bubbles and showed to be high comparison to the CTD. Analysis methods: ----------------- Chlorophyll samples were filtered onto 25mm GF/F filters and stored in glass scintillation vials at -20C prior to analysis. Samples were extracted in 90% acetone at -20C for 24 hours in the lab and analyzed on a Turner 10AU fluorometer which is calibrated annually with commercially pure chlorophyll a (Sigma). Fluorescence readings taken before and after acidification were used to calculate chlorophyll and phaeopigment concentrations (Holm-Hansen et al 1965). Chlorophyll samples were analyzed on board ship in a controlled temperature lab. The average of two samples is reported. Variability is assessed as the CV% (std dev / mean*100). For details see worksheet “CV%” in file QF2012-05_CHL-*.xls. Phaeopigment data are provided for information only and no quality flags are assigned to them. Oxygen samples were analyzed at sea on an automated Winkler titration system (Brinkmann Dosimat model 765 and a PC950 Colorimeter controlled by AutoOxy software V3.4) with modifications based on Carpenter (1965) and adhering to WOCE protocols (Culberson 1991). For details including a duplicate analysis, see document QF2012-05oxy*.xls. Salinity samples were collected in 200 mL type ll glass bottles with reusable silicone inserts supplied by Xiamen Cuten Accessories Industry Limited and screw caps supplied by Ocean Scientific International Limited. They were analyzed in a temperature-controlled lab on a Guildline 8400B Salinometer (S/N 68572) standardized with IAPSO standard seawater within 4 to 12 days of collection. Full details are in file QF2012-05sal*.xls. Nutrient samples were collected in plastic tubes and quick frozen in aluminum blocks stored in a -20C freezer and anlayzed later at the Institute of Ocean Sciences using an Astoria analyzer following methods described in Barwell-Clarke and Whitney (1996). File QF2012-05nuts*.xls includes the raw data and a precision study. References: 1. Barwell-Clarke, J. and Whitney, F. 1996. Institute of Ocean Sciences Nutrient Methods and Analysis. Canadian Technical Report of Hydrography and Ocean Sciences, No. 182, 43 pp. 2. Carpenter, J.H. 1965. The Chesapeake Bay Institute Technique for the Winkler Dissolved Oxygen Method. Limmnol. & Oceanogr., 10: 141-143. 3. Culberson, C.H. 1991. Dissolved oxygen. WOCE Hydrographic Programme Operations and Methods (July 1991). 15pp. 4. Holm-Hansen, O., Lorenzen, C.J., Holmes, R.W., and Strickland J.D.H. 1965. Fluorometric Determination of Chlorophyll. J.du Cons. Intl. Pour l’Epl. De la Mer. 30:3-15. * For PDF versions of these papers see folder \\Cruise_Data\DOCUMENTS\Analysis Reference Papers Data Processing Notes: ---------------------- Transmissivity, fluorescence and PAR data are nominal and unedited except that some records were removed in editing temperature and salinity. For details on how the transmissivity calibration parameters were calculated see the document in folder "\cruise_data\documents\transmissivity". Based on the recommendation from SeaBird, the method for calibration of Dissolved Oxygen concentration was changed from that used for 2011 and some 2012 cruises. For more information see the SeaBird Application NOte #64-2, June 2012 revision. It is not expected that this will make a significant difference in the results. For further processing details see the processing report 2012-05-proc.doc. *CALIBRATION $TABLE: CORRECTED CHANNELS ! Name Units Fmla Pad Coefficients ! ---------------------- ------- ---- ------ ------------ Pressure dbars 10 -99 () (0.5 1) Oxygen:Dissolved:SBE mL/L 10 -99 () (0 1.0704) $END !1- 2- --3--- ---4---- --5-- ---6--- ---7--- ---8---- --9--- --10- -11- -12- -13- ---14--- 15 --16-- 17 --18-- ---19-- --20- 21 --22- 23 --24- 25 --26-- 27 !Bo Bo Pressu Temperat Trans Fluores Fluores Salinity Oxygen Oxyge Numb Samp Temp Salinity Fl Chloro Fl Phaeo- Oxygen: Oxyge Fl Nitra Fl Silic Fl Phosph Fl !tt tt re ure: missi cence: cence: :T1:C1 : n: er_o le_ erat :Bottle ag phyll: ag Pigmen Dissolv n: ag te_ ag ate ag ate ag !~u ~u Secondar vity URU: URU: Dissol Disso ~bin Numb ure: ~o Extrac ~a t: ed Disso ~o plus_ ~t ~i ~p !mb en y Seapoin Wetlabs ved: lved: _rec er Draw tt ted ct Extrac lved lv Nitri ri ca ha !er ce t SBE SBE ords le ed ted ed te te te te !-- -- ------ -------- ----- ------- ------- -------- ------ ----- ---- ---- ---- -------- -- ------ -- ------ ------- ----- -- ----- -- ----- -- ------ -- *END OF HEADER 9 9 1.5 11.9845 6.1 3.899 10.656 28.5752 8.31 362.9 241 9 12.1 -99.0000 0 15.35 6 2.41 8.288 362.2 0 2.3 0 24.2 0 0.80 0 8 8 5.6 11.3738 14.0 3.513 9.719 28.8580 7.56 330.1 241 8 11.4 -99.0000 0 10.74 6 2.58 7.393 323.0 0 5.0 0 24.4 0 0.85 0 7 7 10.6 10.1469 41.9 2.921 3.538 29.0662 5.86 256.0 241 7 10.3 -99.0000 0 -99.00 0 -99.00 5.805 253.5 3 14.0 0 30.7 0 1.46 0 6 6 20.3 9.5635 51.5 1.105 1.135 29.3433 5.31 231.9 241 6 10.6 -99.0000 0 0.96 6 1.27 5.353 233.7 0 16.6 0 31.6 0 1.70 0 5 5 30.6 8.9787 55.8 0.279 0.470 29.4396 5.33 232.5 241 5 9.3 -99.0000 0 -99.00 0 -99.00 5.274 230.2 36 17.6 0 30.0 0 1.86 0 4 4 40.4 8.8585 56.0 0.136 0.320 29.6748 4.93 215.2 241 4 9.3 -99.0000 0 -99.00 0 -99.00 4.899 213.8 0 20.6 6 35.2 6 1.96 6 3 3 50.7 9.0221 49.1 0.248 0.429 29.8759 4.80 209.6 241 3 8.9 -99.0000 0 -99.00 0 -99.00 4.758 207.6 0 21.4 0 38.2 0 1.98 0 2 2 75.6 8.6978 36.0 0.200 0.395 30.3929 4.11 179.5 241 2 8.8 -99.0000 0 -99.00 0 -99.00 3.876 169.1 4 24.6 0 46.9 0 2.35 0 1 1 100.7 8.3773 46.6 0.068 0.200 30.7066 2.11 92.1 241 1 8.7 30.6094 0 -99.00 0 -99.00 2.621 114.3 4 26.8 0 58.9 0 3.00 0