*2014/11/20 09:57:59.69 *IOS HEADER VERSION 1.10 2011/10/26 2011/10/26 *FILE START TIME : UTC 2012/04/08 05:40:33.000 TIME INCREMENT : 0 0 0 0.416667E-01 0 ! (day hr min sec ms) NUMBER OF RECORDS : 17 DATA DESCRIPTION : Bottle:Rosette:Up:Stop + CTD:Up FILE TYPE : ASCII CRC : 546DC6EA NUMBER OF CHANNELS : 28 $TABLE: CHANNELS ! No Name Units Minimum Maximum !--- ---------------------------- --------------- -------------- -------------- 1 Bottle_Number n/a 1 17 2 Bottle:Firing_Sequence n/a 1 17 3 Pressure decibar 1.81 379.32 4 Temperature:Secondary 'deg C (ITS90)' 7.5194 8.7324 5 Transmissivity %/metre 21.6 60.3 6 Fluorescence:URU:Seapoint mg/m^3 0.66E-01 8.204 7 PAR uE/m^2/sec 0 6.372 8 PAR:Reference uE/m^2/sec 14.918 15.344 9 Salinity:T1:C1 PSS-78 27.1316 30.9052 10 Oxygen:Dissolved:SBE mL/L 2.873 10.384 11 Oxygen:Dissolved:SBE umol/kg 125.3 454 12 Number_of_bin_records n/a 241 241 13 Sample_Number n/a 150 166 14 Temperature:Draw 'deg C (ITS90)' 7.7 8.7 15 Salinity:Bottle PSS-78 30.9052 30.9052 16 Flag:Salinity:Bottle n/a 17 Chlorophyll:Extracted mg/m^3 8.89 24.44 18 Flag:Chlorophyll:Extracted n/a 19 Phaeo-Pigment:Extracted mg/m^3 2.84 3.45 20 Oxygen:Dissolved mL/L 2.866 10.349 21 Oxygen:Dissolved umol/kg 124.9456 452.5031 22 Flag:Oxygen:Dissolved n/a 23 Nitrate_plus_Nitrite umol/L 1.7 30.9 24 Flag:Nitrate_plus_Nitrite n/a 25 Silicate umol/L 3.2 68.1 26 Flag:Silicate n/a 27 Phosphate umol/L 0.52 2.86 28 Flag:Phosphate n/a $END $TABLE: CHANNEL DETAIL ! No Pad Start Width Format Type Decimal_Places !--- ---- ----- ----- ------ ---- -------------- 1 -99 ' ' 3 I I 0 2 -99 ' ' 3 I I 0 3 -99 ' ' 7 F ' ' 1 4 -99 ' ' 9 F ' ' 4 5 -99 ' ' 6 F ' ' 1 6 -99 ' ' 8 F ' ' 3 7 -99 ' ' 7 F ' ' 1 8 -99 ' ' 7 F ' ' 1 9 -99 ' ' 9 F ' ' 4 10 -99 ' ' 7 F ' ' 2 11 -99 ' ' 6 F ' ' 1 12 ' ' ' ' 5 I I 0 13 -99 ' ' 5 I I 0 14 -99 ' ' 5 F R4 1 15 -99 ' ' 9 F R4 4 16 0 ' ' 3 NQ C ' ' 17 -99 ' ' 7 F R4 2 18 0 ' ' 3 NQ C ' ' 19 -99 ' ' 7 F R4 2 20 -99 ' ' 8 F R4 3 21 -99 ' ' 6 F ' ' 1 22 0 ' ' 3 NQ C ' ' 23 -99 ' ' 6 F R4 1 24 0 ' ' 3 NQ C ' ' 25 -99 ' ' 6 F R4 1 26 0 ' ' 3 NQ C ' ' 27 -99 ' ' 7 F R4 2 28 0 ' ' 3 NQ C ' ' $END $REMARKS Flag channels initialized with zeros. Non-zero values have the following significance: -------------------------------------------------------------------------------------- 1 = Sample for this measurement was drawn from water bottle but not analyzed (not normally used). 2 = Acceptable measurement (not normally used). 3 = Questionable measurement (no problem observed in sampling or analysis, but value is not trusted, nonetheless; includes outlyers). 4 = Bad measurement (known problem with sampling or analysis, but not serious enough to completely discard the value). 5 = Not reported (lost sample; unredeemably bad measurement). 6 = Mean of replicate measurements. 7 = Manual chromatographic peak measurement. 8 = Irregular digital chromatographic peak integration. 9 = Sample not drawn for this measurement from this bottle (not normally used). -------------------------------------------------------------------------------------- $END *ADMINISTRATION MISSION : 2012-04 AGENCY : IOS, Ocean Sciences Division, Sidney, B.C. COUNTRY : Canada PROJECT : SoG/JdF Water Properties Survey SCIENTIST : Chandler P. PLATFORM : Vector *LOCATION GEOGRAPHIC AREA : Strait of Georgia / Juan de Fuca Strait STATION : 39 EVENT NUMBER : 51 LATITUDE : 49 9.36000 N ! (deg min) LONGITUDE : 123 32.94000 W ! (deg min) WATER DEPTH : 384 ALTIMETER (M) : 4.4 ! custom item $REMARKS Altimeter value is distance from bottom and is calculated as the median of the deepest 2 metres of data. Comments from secondary file: P:\Cruise_Data_Processing\2012-04\Processing\hydro\2012-04-0051.samcln3 ----------------------------------------------------------------------- Altimeter value is distance from bottom and is calculated as the median of the deepest 2 metres of data. $END *INSTRUMENT TYPE : Sea-Bird CTD MODEL : SBE-911plus SERIAL NUMBER : 0506 $REMARKS SOFTWARE VERSION SEASAVE V 7.21B Comments from secondary file: P:\Cruise_Data_Processing\2012-04\Processing\hydro\2012-04-0051.samcln3 ----------------------------------------------------------------------- SOFTWARE VERSION SEASAVE V 7.21B $END *HISTORY $TABLE: PROGRAMS ! Name Vers Date Time Recs In Recs Out ! ------------------------ ------ ---------- -------- --------- --------- SBE_IOS 3.1.2 2012/05/17 10:07:44 4097 4097 CLEAN 5.0.4 2012/05/17 10:08:13 ? ? ADDSAMP 3.5 2012/05/17 10:12:27 4097 4097 BINAVE 4.1.1 2012/05/17 10:12:50 4097 17 MERGE 3.4 2012/05/17 11:00:09 17 17 CLEAN 5.0.4 2012/05/17 11:00:12 17 17 CALIB 11.7 2012/05/23 17:34:05 17 17 CALIB 11.7 2012/05/23 17:34:25 17 17 MERGE 3.4 2012/05/23 17:35:12 17 17 SORT 3.5 2012/05/23 17:35:40 17 17 REMOVECH 8.1.1 2012/05/23 17:35:51 17 17 CHGUNITS 3.0 2012/05/23 17:35:59 17 17 CHGUNITS 3.0 2012/05/23 17:36:02 17 17 REORDER 1.3 2012/05/23 17:36:10 ? ? HDREDIT2 2.5.1 2012/05/23 17:36:21 ? ? CHANGE_CTD_CHANNEL_NAMES 1.0 2013/12/16 15:37:10 17 17 CHANGE_FLAGS 2.0 2014/11/20 09:57:59 17 17 $END $REMARKS -CLEAN functions: 2012/05/17 10:08:00 20 Set event to last 4 characters of file name -The following ADDSAMP parameters were used: Sample Number Lookup File: P:\Cruise_Data_Processing\2012-04\Processing\hydro\addsamp.csv Bottle Channel Name: Bottle_Number -The following BINAVE parameters were used: Bin channel = Bottle_Number Averaging interval = 1.00 Minimum bin value = 0.000 Average value was used Interpolated values were NOT used for empty bins Channel 'NUMBER_OF_BIN_RECORDS' was added to file. -The following MERGE parameters were used: 2012/05/17 11:00:08 2012/05/17 11:00:09 2012/05/17 11:00: Merge Channel: Bottle_Number Merge Scheme Used: Add Secondary to Primary Overlap Scheme Used: Keep Primary Primary Channels to Include: ALL Secondary Channels to Include: Event_Number, Bottle:Position, Salinity:Bottle, Flag:Salinity:Bottle, Chlorophyll:Extracted, Flag:Chlorophyll:Extracted, Phaeo-Pigment:Extracted, Oxygen:Dissolved, Flag:Oxygen:Dissolved, Temperature:Draw, Nitrate_plus_Nitrite, Flag:Nitrate_plus_Nitrite, Silicate, Flag:Silicate, Phosphate, Flag:Phosphate, Ammonium, Flag:Ammonium, pH, Flag:pH, Dimethyl_Sulphide, Flag:Dimethyl_Sulphide Primary file : P:\Cruise_Data_Processing\2012-04\Processing\hydro\2012-04-0051.samavg Secondary file: P:\Cruise_Data_Processing\2012-04\Processing\hydro\2012-04-0051.mrgcln1s -SORT parameters: 2012/05/17 10:59:41 Sorted in ascending order of channel Bottle_Number -CLEAN functions: 2012/05/17 11:00:11 20 Reset #RECS, MIN & MAX values in header. Remove Sea-Bird comments from the header. Remove remark heading: "Comments from secondary" -CALIB parameters: 2012/05/23 17:34:05 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = P:\Cruise_Data_Processing\2012-04\Processing\doc\2012-04-recal.ccf Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 3 Pressure dbars 10 0.1200000E+01 0.1000000E+01 -CALIB parameters: 2012/05/23 17:34:25 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = P:\Cruise_Data_Processing\2012-04\Processing\doc\2012-04-recal2.ccf Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 16 Salinity:T1:C1 PSS-78 10 0.5000000E-02 0.1000000E+01 -The following MERGE parameters were used: 2012/05/23 17:35:11 2012/05/23 17:35:11 2012/05/23 17:35: Merge Channel: Bottle_Number [n/a] Merge Scheme Used: Add Secondary to Primary Overlap Scheme Used: Keep Primary Primary Channels to Include: ALL Secondary Channels to Include: Transmissivity [%/metre], PAR:Reference [uE/m^2/sec], pH:SBE [pH Units] Primary file : P:\Cruise_Data_Processing\2012-04\Processing\hydro\2012-04-0051.mrgcor2 Secondary file: P:\Cruise_Data_Processing\2012-04\Processing\hydro\2012-04-0051.samcln3 Comments from secondary file: P:\Cruise_Data_Processing\2012-04\Processing\hydro\2012-04-0051.samcln3 ----------------------------------------------------------------------- -CLEAN functions: 2012/05/23 16:09:26 20 Set event to last 4 characters of file name -The following ADDSAMP parameters were used: Sample Number Lookup File: P:\Cruise_Data_Processing\2012-04\Processing\hydro\addsamp.csv Bottle Channel Name: Bottle_Number -The following BINAVE parameters were used: Bin channel = Bottle_Number Averaging interval = 1.00 Minimum bin value = 0.000 Average value was used Interpolated values were NOT used for empty bins Channel 'NUMBER_OF_BIN_RECORDS' was added to file. -CLEAN functions: 2012/05/23 16:35:02 20 Reset #RECS, MIN & MAX values in header. Remove Sea-Bird comments from the header. Remove remark heading: "Comments from secondary" -SORT parameters: 2012/05/23 17:35:40 Sorted in ascending order of channel Pressure [dbars] -REMOVECH 2012/05/23 17:35:51 The following CHANNEL(S) were removed: Scan_Number Temperature:Primary [deg C (ITS90)] Conductivity:Primary [S/m] Conductivity:Secondary [S/m] Oxygen:Voltage:SBE [volts] Altimeter [metres] Status:Pump Descent_Rate [m/s] Salinity:T0:C0 [PSS-78] Flag pH:SBE [pH Units] -CHANGE units: 'Oxygen:Dissolved:SBE' changed from mL/L to umol/kg -CHANGE units: 'Oxygen:Dissolved' changed from mL/L to umol/kg -HEADER EDITS: 2012/05/23 17:36:21 Applied edit header: P:\Cruise_Data_Processing\2012-04\Processing\doc\HYDRO\2012-04-bot-hdr.txt Channel 2: Bottle:Firing_Sequence [n/a] Name: Bottle_Number ==> Bottle:Firing_Sequence Channel 1: Bottle_Number [n/a] Name: Bottle:Position ==> Bottle_Number Channel 3: Pressure [decibar] Units: dbars ==> decibar Format: F10.3 ==> F7.1 Channel 7: PAR [uE/m^2/sec] Format: F11.3 ==> F7.1 Channel 9: Salinity:Practical:T1:C1 [PSS-78] Name: Salinity:T1:C1 ==> Salinity:Practical:T1:C1 Channel 10: Oxygen:Dissolved:SBE [mL/L] Format: F8.3 ==> F7.2 Channel 14: Temperature:Draw [deg C (ITS90)] Units: ==> deg C (ITS90) Channel 16: Flag:Salinity:Bottle [n/a] Units: ==> n/a Channel 18: Flag:Chlorophyll:Extracted [n/a] Units: ==> n/a Channel 20: Oxygen:Dissolved [mL/L] Units: mg/m^3 ==> mL/L Format: F7.3 ==> F8.3 Channel 22: Flag:Oxygen:Dissolved [n/a] Units: ==> n/a Channel 23: Nitrate_plus_Nitrite [umol/L] Units: ==> umol/L Channel 24: Flag:Nitrate_plus_Nitrite [n/a] Units: ==> n/a Channel 25: Silicate [umol/L] Units: ==> umol/L Format: F7.2 ==> F6.1 Channel 26: Flag:Silicate [n/a] Units: ==> n/a Channel 27: Phosphate [umol/L] Units: ==> umol/L Channel 28: Flag:Phosphate [n/a] Units: ==> n/a Channel 8: PAR:Reference [uE/m^2/sec] Format: F11.3 ==> F7.1 Channel 6: Fluorescence:URU:Seapoint [mg/m^3] Name: Fluorescence:Seapoint ==> Fluorescence:URU:Seapoint Format: F5.1 ==> F8.3 $END *COMMENTS Sample_Number 153: OXY: Niskin top cap was leaking air; Was previously flagged as a 2 but it showed to be a bit out of line with the CTD DO therefore downgraded the flag to a 3. Sample_Number 166: OXY: Niskin top cap was leaking air. Lots of floaters/murky water Analysis methods: ----------------- Chlorophyll samples were filtered onto 25mm GF/F filters and stored in glass scintillation vials at -20C prior at sea and -80C in the lab. Samples were extracted in 90% acetone for 24 hours in the lab 3 weeks after collection and analyzed on a Turner 10AU f which is calibrated annually with commercially pure chlorophyll a (Sigma). Fluorescence readings taken before and after acidification were used to calculate chlorophyll and phaeopigment concentrations (Holm-Hansen 1978). The average of two samples is reported. Variability is assessed as the CV% (std dev / mean*100). For details see worksheet “CV%” in file QF2012-04_CHL-*.xls. Phaeopigment data are provided for information only and no quality flags are assigned to them. Oxygen samples were analyzed at sea using an automated Winkler titration system (Brinkmann Dosimat model 765 and a PC950 Colorimeter controlled by AutoOxy software V3.4) with modifications based on Carpenter (1965) and adhering to WOCE protocols (Culberson 1991). For details including a duplicate analysis, see document QF2012-04oxy*.xls. Salinity samples were collected in 200 mL type ll glass bottles with reusable silicone inserts supplied by Xiamen Cuten Accessories Industry Limited and screw caps supplied by Ocean Scientific International Limited. They were analyzed in a temperature-controlled lab at IOS on a Guildline 8400B Salinometer standardized with IAPSO standard seawater 19 days after collection. Full results are in file QF2012-04sal*.xls. Nutrient samples were collected in plastic tubes and frozen and later analysed at IOS using an Astoria analyzer following methods described in Barwell-Clarke and Whitney (1996). For details including a duplicate analysis see file QF2012-04nuts*.xls. References: 1. Barwell-Clarke, J. and Whitney, F. 1996. Institute of Ocean Sciences Nutrient Methods and Analysis. Canadian Technical Report of Hydrography and Ocean Sciences, No. 182, 43 pp. 2. Carpenter, J.H. 1965. The Chesapeake Bay Institute Technique for the Winkler Dissolved Oxygen Method. Limmnol. & Oceanogr., 10: 141-143. 3. Culberson, C.H. 1991. Dissolved oxygen. WOCE Hydrographic Programme Operations and Methods (July 1991). 15pp. 4. Holm-Hansen, O., Lorenzen, C.J., Holmes, R.W., and Strickland J.D.H. 1965. Fluorometric Determination of Chlorophyll. J.du Cons. Intl. Pour l’Epl. De la Mer. 30:3-15. * For PDF versions of these papers see folder \\Cruise_Data\DOCUMENTS\Analysis Reference Papers Data Processing Notes: ---------------------- Transmissivity, PAR, surface PAR and SBE Fluorescence data are nominal and unedited. For details on how the transmissivity calibration parameters were calculated see the document in folder "\cruise_data\documents\transmissivity". SBE DO calibration was done using the method described in the SeaBird Application NOte #64-2. For further processing details see the processing report 2012-04-proc.doc. *CALIBRATION $TABLE: CORRECTED CHANNELS ! Name Units Fmla Pad Coefficients ! ---------------- -------- ---- ------ ------------ Pressure dbars 10 -99 () (1.2 1) Salinity:T1:C1 PSS-78 10 -99 () (0.5E-02 1) $END !1- 2- --3--- ---4---- --5-- ---6--- --7--- --8--- ---9---- --10-- --11- -12- -13- -14- ---15--- 16 --17-- 18 --19-- ---20-- --21- 22 --23- 24 --25- 26 --27-- 28 !Bo Bo Pressu Temperat Trans Fluores PAR PAR: Salinity Oxygen Oxyge Numb Samp Temp Salinity Fl Chloro Fl Phaeo- Oxygen: Oxyge Fl Nitra Fl Silic Fl Phosph Fl !tt tt re ure: missi cence: Refere :T1:C1 : n: er_o le_ erat :Bottle ag phyll: ag Pigmen Dissolv n: ag te_ ag ate ag ate ag !~u ~u Secondar vity URU: nce Dissol Disso ~bin Numb ure: ~o Extrac ~a t: ed Disso ~o plus_ ~t ~i ~p !mb en y Seapoin ved: lved: _rec er Draw tt ted ct Extrac lved lv Nitri ri ca ha !er ce t SBE SBE ords le ed ted ed te te te te !-- -- ------ -------- ----- ------- ------ ------ -------- ------ ----- ---- ---- ---- -------- -- ------ -- ------ ------- ----- -- ----- -- ----- -- ------ -- *END OF HEADER 17 17 1.8 8.5883 21.6 7.400 6.4 15.1 27.1316 10.38 454.0 241 166 8.7 -99.0000 0 24.44 6 3.20 10.349 452.5 2 1.7 0 3.2 0 0.52 0 16 16 6.0 7.6533 25.1 8.200 0.5 15.2 28.8643 7.88 344.0 241 165 7.8 -99.0000 0 -99.00 0 -99.00 7.656 334.3 0 18.5 0 28.6 0 1.68 0 15 15 11.2 7.5490 36.4 4.400 0.0 15.1 28.9779 7.17 312.8 241 164 7.8 -99.0000 0 14.95 6 3.45 7.224 315.4 0 20.6 0 35.1 0 1.76 0 14 14 21.0 7.5194 42.3 2.900 0.0 15.2 29.0488 6.87 299.8 241 163 7.7 -99.0000 0 8.89 6 2.84 6.748 294.6 0 23.2 0 42.0 0 2.04 0 13 13 31.3 7.6296 58.6 0.500 0.0 15.1 29.4780 5.66 247.2 241 162 7.8 -99.0000 0 -99.00 0 -99.00 5.722 249.7 0 28.3 0 54.1 0 2.37 0 12 12 41.1 7.6577 59.5 0.400 0.0 15.0 29.5361 5.55 242.1 241 161 7.8 -99.0000 0 -99.00 0 -99.00 5.483 239.3 6 28.8 0 55.1 0 2.21 0 11 11 50.8 7.7237 60.3 0.300 0.0 15.2 29.6626 5.31 231.5 241 160 7.9 -99.0000 0 -99.00 0 -99.00 5.297 231.1 0 29.2 6 55.6 6 2.39 6 10 10 76.1 7.5625 56.0 0.200 0.0 15.2 29.8971 5.56 242.7 241 159 7.7 -99.0000 0 -99.00 0 -99.00 5.566 242.8 0 28.9 0 53.0 0 2.19 0 9 9 101.0 7.6263 53.7 0.100 0.0 15.3 30.0874 5.24 228.7 241 158 7.7 -99.0000 0 -99.00 0 -99.00 5.267 229.7 0 29.0 0 53.3 0 2.32 0 8 8 125.9 7.6810 54.7 0.100 0.0 15.3 30.2547 5.02 219.1 241 157 7.8 -99.0000 0 -99.00 0 -99.00 4.990 217.6 0 29.6 0 54.9 0 2.28 0 7 7 151.2 7.7404 54.5 0.100 0.0 15.0 30.3675 4.84 211.0 241 156 7.9 -99.0000 0 -99.00 0 -99.00 4.795 209.1 0 29.6 0 55.6 0 2.40 0 6 6 176.3 7.8508 53.3 0.100 0.0 15.1 30.4504 4.59 200.2 241 155 7.9 -99.0000 0 -99.00 0 -99.00 4.587 200.0 0 29.5 0 56.3 0 2.43 0 5 5 201.2 7.8563 55.6 0.100 0.0 15.1 30.5076 4.54 197.8 241 154 7.9 -99.0000 0 -99.00 0 -99.00 4.530 197.5 6 29.8 0 56.6 0 2.35 0 4 4 251.0 8.5491 57.4 0.100 0.0 15.2 30.8037 3.29 143.6 241 153 8.3 -99.0000 0 -99.00 0 -99.00 3.262 142.2 2 30.5 6 62.7 6 2.59 6 3 3 300.9 8.7109 55.8 0.100 0.0 14.9 30.8757 2.99 130.5 241 152 8.4 -99.0000 0 -99.00 0 -99.00 2.982 130.0 0 30.5 0 64.6 0 2.70 0 2 2 351.4 8.7322 39.5 0.100 0.0 14.9 30.9037 2.88 125.6 241 151 8.3 30.9052 0 -99.00 0 -99.00 2.870 125.1 0 30.7 0 67.7 0 2.79 0 1 1 379.3 8.7324 36.7 0.100 0.0 14.9 30.9052 2.87 125.3 241 150 8.3 -99.0000 0 -99.00 0 -99.00 2.866 124.9 0 30.9 0 68.1 0 2.86 0