*2012/05/19 15:23:59.82 *IOS HEADER VERSION 1.10 2011/10/26 2011/10/26 *FILE START TIME : UTC 2012/03/10 15:00:54.000 TIME INCREMENT : 0 0 0 0.416667E-01 0 ! (day hr min sec ms) NUMBER OF RECORDS : 95 DATA DESCRIPTION : CTD FILE TYPE : ASCII CRC : 26E9F8EF NUMBER OF CHANNELS : 7 $TABLE: CHANNELS ! No Name Units Minimum Maximum !--- -------------------------- --------------- -------------- -------------- 1 Pressure decibar 4.08 97.65 2 Temperature:Secondary 'deg C (ITS90)' 6.9077 7.1188 3 Fluorescence:URU:Wetlabs mg/m^3 0.404 1.05 4 Salinity:T1:C1 PSS-78 31.6766 32.756 5 Oxygen:Dissolved:SBE mL/L 5.015 6.696 6 Oxygen:Dissolved:SBE umol/kg 218.285 291.672 7 Number_of_bin_records n/a 2 42 $END $TABLE: CHANNEL DETAIL ! No Pad Start Width Format Type Decimal_Places !--- ---- ----- ----- ------ ---- -------------- 1 -99 ' ' 7 F ' ' 1 2 -99 ' ' 9 F ' ' 4 3 -99 ' ' 8 F ' ' 3 4 -99 ' ' 9 F ' ' 4 5 -99 ' ' 7 F ' ' 2 6 -99 ' ' 6 F ' ' 1 7 ' ' ' ' 5 I I 0 $END $REMARKS This file converted from Sea-Bird file: P:\Cruise_Data_Processing\2012-03\Pro Comments from secondary file: P:\Cruise_Data_Processing\2012-03\Processing\ios\2012-03-0139.cln2 ------------------------------------------------------------------ This file converted from Sea-Bird file: P:\Cruise_Data_Processing\2012-03\Pro $END *ADMINISTRATION MISSION : 2012-03 AGENCY : PBS, Salmon And Freshwater Ecosystems, Nanaimo, B.C. COUNTRY : Canada PROJECT : High Seas Salmon SCIENTIST : Zubkowski T. PLATFORM : W.E. Ricker *LOCATION GEOGRAPHIC AREA : Juan de Fuca / WCVI / Queen Charlotte Strait STATION : T 07 EVENT NUMBER : 139 LATITUDE : 50 49.33000 N ! (deg min) LONGITUDE : 129 13.98000 W ! (deg min) WATER DEPTH : 109 *INSTRUMENT TYPE : Sea-Bird CTD MODEL : SBE-911plus SERIAL NUMBER : 0506 $REMARKS SOFTWARE VERSION SEASAVE V 7.21D Comments from secondary file: P:\Cruise_Data_Processing\2012-03\Processing\ios\2012-03-0139.cln2 ------------------------------------------------------------------ SOFTWARE VERSION SEASAVE V 7.21D $END *HISTORY $TABLE: PROGRAMS ! Name Vers Date Time Recs In Recs Out ! -------- ------ ---------- -------- --------- --------- SBE_IOS 3.1.1 2012/05/02 17:12:32 7379 7379 CLEAN 5.0.4 2012/05/02 17:16:42 7379 7379 SHIFTDAT 3.4 2012/05/04 10:05:14 7379 7379 SHIFTDAT 3.4 2012/05/04 13:36:09 7379 7379 SHIFTDAT 3.4 2012/05/04 13:41:16 7379 7379 DELETE 6.3 2012/05/04 13:46:18 7379 2211 CTDEDIT 4.61 2012/05/07 17:45:07 2211 1888 MERGE 3.4 2012/05/18 16:37:18 1888 1888 CALIB 11.7 2012/05/18 16:42:52 1888 1888 FILTERS 4.3 2012/05/18 17:02:45 1888 1888 BINAVE 4.1.1 2012/05/18 17:03:41 1888 95 REMOVECH 8.1.1 2012/05/18 17:03:59 95 95 CHGUNITS 3.0 2012/05/18 17:05:02 95 95 REORDER 1.3 2012/05/19 15:21:46 ? ? HDREDIT2 2.5.1 2012/05/19 15:23:59 ? ? $END $REMARKS -CLEAN functions: 2012/05/02 17:14:01 20 Interpolation by Record Number, in Pressure Set event to last 4 characters of file name -The following SHIFT parameters were used. Shift Channel: Fluorescence:Wetlabs:ECO-AFL # of Records to Advance (-ve for Delay): At REC# 0 Shift= 12.00 -The following SHIFT parameters were used. Shift Channel: Conductivity:Primary # of Records to Advance (-ve for Delay): At REC# 0 Shift= -0.50 Salinity was recalculated after shift -The following SHIFT parameters were used. Shift Channel: Conductivity:Secondary # of Records to Advance (-ve for Delay): At REC# 0 Shift= -0.70 Salinity was recalculated after shift -The following DELETE parameters were used: Surface Record Removal: Last Press Min Maximum Surface Pressure (relative): 10.00 Surface Swell Pressure Tolerance: 1.00 Pressure filtered over width: 15 Swells deleted. Warning message if pressure difference of 2.00 Drop rates < 0.30m/s (calculated over 11 points) will be deleted. Drop rate applies in the range 10.00 to 86.61 dbars Sample interval (from FILE section of header) = 0.042 seconds. -CTDEDIT 2012/05/07 17:45:07 323 records were deleted in this editing session. 57 changes in channel Salinity:T1:C1 -The following MERGE parameters were used: 2012/05/18 16:35:26 2012/05/18 16:35:27 2012/05/18 16:35: Merge Channel: Scan_Number Merge Scheme Used: Add Secondary to Primary Overlap Scheme Used: Keep Primary Primary Channels to Include: Scan_Number, Pressure, Temperature:Primary, Temperature:Secondary, Conductivity:Primary, Conductivity:Secondary, Fluorescence:Wetlabs:ECO-AFL, Oxygen:Voltage:SBE, pH:SBE, Descent_Rate, Status:Pump, Salinity:T0:C0, Salinity:T1:C1, Flag Secondary Channels to Include: Oxygen:Dissolved:SBE Primary file : P:\Cruise_Data_Processing\2012-03\Processing\ios\2012-03-0139.edt Secondary file: P:\Cruise_Data_Processing\2012-03\Processing\ios\2012-03-0139.cln2 Comments from secondary file: P:\Cruise_Data_Processing\2012-03\Processing\ios\2012-03-0139.cln2 ------------------------------------------------------------------ -CLEAN functions: 2012/05/18 15:57:28 20 Reset #RECS, MIN & MAX values in header. -The following DELETE parameters were used: Surface Record Removal: Last Press Min Maximum Surface Pressure (relative): 10.00 Surface Swell Pressure Tolerance: 1.00 Pressure filtered over width: 15 Swells deleted. Warning message if pressure difference of 2.00 Drop rates < 0.30m/s (calculated over 11 points) will be deleted. Drop rate applies in the range 10.00 to 86.61 dbars Sample interval (from FILE section of header) = 0.042 seconds. -CLEAN functions: 2012/05/18 16:33:58 20 Remove Sea-Bird comments from the header. -CALIB parameters: 2012/05/18 16:42:52 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = P:\Cruise_Data_Processing\2012-03\Processing\doc\2012-03-Recal1.CCF Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 2 Pressure dbars 10 0.1200000E+01 0.1000000E+01 13 Salinity:T1:C1 PSS-78 10 0.4000000E-02 0.1000000E+01 -The following FILTER parameters were used. Median filter was used. Filter width = 11 The following channel(s) were filtered. Fluorescence:Wetlabs:ECO-AFL -The following BINAVE parameters were used: Bin channel = Pressure Averaging interval = 1.00 Minimum bin value = 0.000 Average value was used Interpolated values were NOT used for empty bins Channel 'NUMBER_OF_BIN_RECORDS' was added to file. -REMOVECH 2012/05/18 17:03:59 The following CHANNEL(S) were removed: Scan_Number Temperature:Primary [deg C (ITS90)] Conductivity:Primary [S/m] Conductivity:Secondary [S/m] Oxygen:Voltage:SBE [volts] pH:SBE [pH Units] Descent_Rate [m/s] Status:Pump Salinity:T0:C0 [PSS-78] Flag -CHANGE units: 'Oxygen:Dissolved:SBE [mL/L]' changed from mL/L to umol/kg -HEADER EDITS: 2012/05/19 15:23:59 Applied edit header: P:\Cruise_Data_Processing\2012-03\Processing\doc\2012-03-hdr.txt Channel 1: Pressure [decibar] Units: dbars ==> decibar Format: F11.2 ==> F7.1 Channel 3: Fluorescence:URU:Wetlabs [mg/m^3] Name: Fluorescence:Wetlabs:ECO-AFL ==> Fluorescence:URU:Wetlabs Channel 5: Oxygen:Dissolved:SBE [mL/L] Format: F8.3 ==> F7.2 $END *COMMENTS SBE HEADER Sea-Bird SBE 9 Data File: FileName = C:\Data\2012-03\2012-03-0139.hex Software Version Seasave V 7.21d Temperature SN = 2038 Conductivity SN = 3394 Number of Bytes Per Scan = 40 Number of Voltage Words = 5 Number of Scans Averaged by the Deck Unit = 1 System UpLoad Time = Mar 10 2012 14:01:31 NMEA Latitude = 50 49.33 N NMEA Longitude = 129 13.98 W NMEA UTC (Time) = Mar 10 2012 15:00:54 Store Lat/Lon Data = Append to Every Scan SBE 11plus V 5.1e number of scans to average = 1 pressure baud rate = 9600 NMEA baud rate = 4800 surface PAR voltage added to scan A/D offset = 3 Latitude/Longitude added to scan GPIB address = 1 advance primary conductivity 0.073 seconds advance secondary conductivity 0.073 seconds S> Ricker 2012-03 Station: T 07 Depth(m): 109 System UTC = Mar 10 2012 14:01:31 # nquan = 15 # nvalues = 7379 # units = specified # name 0 = scan: Scan Count # name 1 = prDM: Pressure, Digiquartz [db] # name 2 = t090C: Temperature [ITS-90, deg C] # name 3 = t190C: Temperature, 2 [ITS-90, deg C] # name 4 = c0S/m: Conductivity [S/m] # name 5 = c1S/m: Conductivity, 2 [S/m] # name 6 = flECO-AFL: Fluorescence, WET Labs ECO-AFL/FL [mg/m^3] # name 7 = sbeox0V: Oxygen raw, SBE 43 [V] # name 8 = ph: pH # name 9 = dz/dtM: Descent Rate [m/s] # name 10 = pumps: Pump Status # name 11 = sal00: Salinity, Practical [PSU] # name 12 = sal11: Salinity, Practical, 2 [PSU] # name 13 = sbeox0ML/L: Oxygen, SBE 43 [ml/l], WS = 2 # name 14 = flag: flag # span 0 = 1, 7379 # span 1 = -0.189, 96.615 # span 2 = 6.8922, 7.1201 # span 3 = 6.8965, 7.1209 # span 4 = 3.214856, 3.328874 # span 5 = 3.214885, 3.329996 # span 6 = 0.0662, 3.0918 # span 7 = 2.1342, 2.7218 # span 8 = 7.796, 8.362 # span 9 = -2.568, 2.359 # span 10 = 0, 1 # span 11 = 31.6503, 32.7500 # span 12 = 31.6470, 32.7633 # span 13 = 5.31358, 7.24259 # span 14 = 0.0000e+00, 0.0000e+00 # interval = seconds: 0.0416667 # start_time = Mar 10 2012 15:00:54 [NMEA time, header] # bad_flag = -9.990e-29 # # # # # 2038 # 13-Apr-11 # 1 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.000 # 4.34121727e-003 # 6.27761521e-004 # 1.93344285e-005 # 1.38951411e-006 # 1000.000 # 1.00000000 # 0.0000 # # # # # # 3394 # 29-Mar-11 # 1 # # 0.0000 # 2000.0000 # 0 # # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.0 # -9.57000000e-008 # # # -9.62629272e+000 # 1.47700223e+000 # -1.98297688e-003 # 2.38475512e-004 # -9.57000000e-008 # 3.2500e-006 # # 0.00000000e+000 # # 1.00000000 # 0.00000 # # # # # # 69698 # 15-Apr-11 # -4.957807e+004 # -1.280011e+000 # 1.485710e-002 # 4.021200e-002 # 0.000000e+000 # 3.037224e+001 # -6.696188e-004 # 3.897170e-006 # 3.287590e-009 # 0.99992459 # -1.37675 # 0.000000e+000 # 1.280810e-002 # -9.210198e+000 # # # # # # 4883 # 31-Mar-11 # 1 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.000 # 4.38024578e-003 # 6.40182173e-004 # 2.13732036e-005 # 1.78729483e-006 # 1000.000 # 1.00000000 # 0.0000 # # # # # # 1763 # 29-Mar-11 # 1 # # 0.0000 # 2000.0000 # 0 # # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.0 # -9.57000000e-008 # # # -4.22277306e+000 # 5.07762678e-001 # -5.42749610e-004 # 5.32046027e-005 # -9.57000000e-008 # 3.2500e-006 # # 0.00000000e+000 # # 1.00000000 # 0.00000 # # # # # # # # # # # # 1119 # 29-Mar-11p # 1 # # # 0.0000 # 0.0000e+000 # 0.0000 # 0.00e+000 # 0.0000 # 0.0 # # # # 4.7070e-001 # -0.4812 # -1.5691e-003 # 7.1741e-005 # -1.3719e-006 # 2.5826e+000 # 1.92630e-004 # -4.64800e-002 # 3.6000e-002 # 1.1300 #

-3.3000e-002

#

5.0000e+003

#

1.4500e+003

# # # # # # # 2215 # Mar 2012 # 6.00000000e+000 # # 0.0256 # # # # # # 0851 # 21-Apr-11 # 4.6180 # 2.5063 # # # # # # # # # # # # # # # # # # # # 0.00000000 # 0.00000000 # # # # datcnv_date = May 02 2012 16:07:51, 7.21d [datcnv_vars = 11] # datcnv_in = P:\Cruise_Data_Processing\2012-03\RAW\CTD\2012-03-0139.hex P:\Crui se_Data_Processing\2012-03\Processing\doc\2012-03-ctd-new.xmlcon # datcnv_skipover = 0 # datcnv_ox_hysteresis_correction = yes # wildedit_date = May 02 2012 16:10:55, 7.21d # wildedit_in = P:\Cruise_Data_Processing\2012-03\Processing\convert\2012-03-013 9.cnv # wildedit_pass1_nstd = 2.0 # wildedit_pass2_nstd = 5.0 # wildedit_pass2_mindelta = 0.000e+000 # wildedit_npoint = 50 # wildedit_vars = prDM t090C t190C c0S/m c1S/m # wildedit_excl_bad_scans = yes # alignctd_date = May 02 2012 16:14:45, 7.21d # alignctd_in = P:\Cruise_Data_Processing\2012-03\Processing\wildedit\2012-03-01 39.cnv # alignctd_adv = sbeox0V 2.000 # celltm_date = May 02 2012 16:16:27, 7.21d # celltm_in = P:\Cruise_Data_Processing\2012-03\Processing\align\2012-03-0139.cn v # celltm_alpha = 0.0200, 0.0200 # celltm_tau = 7.0000, 7.0000 # celltm_temp_sensor_use_for_cond = primary, secondary # Derive_date = May 02 2012 16:26:23, 7.21d [derive_vars = 3] # Derive_in = P:\Cruise_Data_Processing\2012-03\Processing\celltm\2012-03-0139.c nv P:\Cruise_Data_Processing\2012-03\Processing\doc\2012-03-ctd-new.xmlcon # derive_time_window_docdt = seconds: 2 # derive_ox_tau_correction = yes # file_type = ascii END* CTDEDIT was used to remove surface records and records corrupted by shed wakes; salinity was cleaned. Data Processing Notes: ---------------------- Fluorescence data are nominal and unedited, except that some records were removed in editing temperature and salinity. There was no calibration sampling for dissolved oxygen, but the results of cruise 2012-04 were used to derive DO concentration. Recalibration of CTD salinity was based on many 10m bottles and 1 deep bottle from this cruise and from sampling during 2012-04. Both comparisons were limited by great variability, but salinity data are likely good to +/-0.003. The SBE pH sensor malfunctioned throughout the cruise. It was discovered late in processing that the dissolved oxygen concentration had been calibrated incorrectly, so the data were re-derived with the right parameters and put through all the same steps as originally run. Because the temperature and salinity data had already been edited, the corrected dissolved oxygen data were merged with the other channels at a stage after editing. This has no ill effects on any of the data, but the Dissolved Oxygen calibrations shown in the headers have incorrect values for SOC and VOffset; they should be 0.4442 and -0.4822, respectively. For details on the processing see processing report: 2012-03-proc.doc. *CALIBRATION $TABLE: CORRECTED CHANNELS ! Name Units Fmla Pad Coefficients ! ---------------- -------- ---- ------ ------------ Pressure dbars 10 -99 () (1.2 1) Salinity:T1:C1 PSS-78 10 -99 () (0.4E-02 1) $END !--1--- ---2---- ---3--- ---4---- --5--- --6-- -7-- !Pressu Temperat Fluores Salinity Oxygen Oxyge Numb !re ure: cence: :T1:C1 : n: er_o ! Secondar URU: Dissol Disso ~bin ! y Wetlabs ved: lved: _rec ! SBE SBE ords !------ -------- ------- -------- ------ ----- ---- *END OF HEADER 4.1 6.9077 0.976 31.6766 6.53 284.5 9 5.0 6.9085 1.009 31.6778 6.52 284.2 20 6.0 6.9100 1.011 31.6787 6.36 277.3 29 7.0 6.9103 1.050 31.6776 6.12 266.4 30 8.0 6.9099 1.025 31.6786 6.19 269.6 32 9.0 6.9107 1.018 31.6793 6.40 278.6 26 10.0 6.9098 1.004 31.6798 6.39 278.4 23 11.0 6.9096 0.995 31.6790 6.42 279.7 26 12.0 6.9100 0.988 31.6791 6.41 279.2 27 13.0 6.9101 1.009 31.6793 6.32 275.2 33 14.0 6.9098 0.993 31.6788 6.13 267.2 27 15.0 6.9097 0.999 31.6789 6.41 279.4 21 16.0 6.9097 0.990 31.6792 6.60 287.4 15 17.0 6.9101 0.993 31.6793 6.64 289.4 14 18.0 6.9129 0.977 31.6801 6.65 289.6 12 19.0 6.9120 0.979 31.6819 6.61 287.9 14 20.0 6.9108 0.979 31.6809 6.50 283.2 14 21.3 6.9131 0.987 31.6814 6.25 272.3 9 22.1 6.9180 0.977 31.6819 6.62 288.5 8 23.0 6.9346 0.964 31.6912 6.61 288.1 12 23.6 6.9374 0.960 31.6989 6.58 286.5 2 25.0 6.9406 0.950 31.6998 6.38 277.7 17 25.6 6.9417 0.945 31.7005 6.25 272.3 5 27.4 6.9440 0.953 31.7025 6.49 282.7 5 28.0 6.9468 0.947 31.7070 6.49 282.5 11 29.0 6.9458 0.949 31.7068 6.38 277.9 16 29.9 6.9468 0.944 31.7070 6.28 273.6 10 31.0 6.9475 0.945 31.7073 6.39 278.3 21 31.8 6.9510 0.931 31.7073 6.41 279.0 8 33.2 6.9580 0.958 31.7096 6.34 276.2 14 34.0 6.9701 0.966 31.7238 6.42 279.5 20 34.8 6.9749 0.960 31.7350 6.47 281.7 12 36.3 6.9795 0.940 31.7377 6.32 275.4 10 37.0 6.9846 0.921 31.7382 6.14 267.6 31 38.4 7.0038 0.894 31.7585 6.58 286.6 3 39.0 7.0026 0.920 31.7690 6.65 289.6 12 40.0 7.0069 0.912 31.7757 6.70 291.7 11 41.0 7.0214 0.854 31.7917 6.70 291.6 11 42.0 7.0338 0.866 31.8033 6.68 290.8 13 43.0 7.0421 0.875 31.8117 6.65 289.5 26 44.0 7.0436 0.865 31.8146 6.62 288.2 15 45.0 7.0479 0.850 31.8231 6.61 287.7 16 45.9 7.0516 0.834 31.8348 6.59 287.2 17 47.0 7.0551 0.818 31.8492 6.57 286.3 11 48.0 7.0562 0.830 31.8534 6.56 285.6 12 49.0 7.0602 0.811 31.8732 6.53 284.3 12 50.0 7.0698 0.801 31.9109 6.49 282.6 15 51.1 7.0746 0.773 31.9339 6.44 280.5 33 52.0 7.0753 0.750 31.9390 6.42 279.4 14 53.0 7.0757 0.756 31.9412 6.41 279.2 15 54.0 7.0785 0.752 31.9521 6.40 278.7 19 55.1 7.0798 0.751 31.9558 6.39 278.2 34 56.0 7.0799 0.748 31.9565 6.39 278.1 39 57.0 7.0819 0.736 31.9696 6.37 277.3 42 58.0 7.0867 0.723 31.9978 6.32 275.2 17 59.0 7.0994 0.689 32.0559 6.26 272.6 18 60.0 7.1096 0.654 32.0903 6.20 269.8 18 61.0 7.1129 0.654 32.1023 6.16 268.2 19 62.0 7.1145 0.649 32.1098 6.13 267.1 24 62.6 7.1159 0.630 32.1181 6.12 266.6 5 64.1 7.1151 0.640 32.1223 6.11 266.2 13 65.0 7.1148 0.651 32.1244 6.11 265.9 16 66.0 7.1148 0.631 32.1381 6.09 265.4 17 67.0 7.1149 0.645 32.1480 6.08 264.7 21 68.1 7.1141 0.614 32.1500 6.07 264.2 28 69.1 7.1155 0.617 32.1559 6.05 263.6 13 70.0 7.1160 0.632 32.1574 6.05 263.4 21 71.0 7.1160 0.631 32.1577 6.05 263.3 23 72.0 7.1168 0.615 32.1563 6.05 263.3 24 73.0 7.1188 0.632 32.1583 6.04 263.1 23 74.0 7.1167 0.634 32.1567 6.03 262.8 31 74.8 7.1166 0.637 32.1581 6.04 263.2 19 76.0 7.1176 0.682 32.1737 6.02 262.2 42 77.0 7.1178 0.641 32.1767 6.01 261.6 26 78.0 7.1171 0.618 32.1916 5.98 260.4 19 79.0 7.1039 0.590 32.2259 5.94 258.6 18 80.0 7.0994 0.610 32.2283 5.92 257.7 24 81.0 7.0928 0.591 32.2381 5.90 257.0 22 82.1 7.0894 0.590 32.2463 5.89 256.3 35 83.0 7.0873 0.601 32.2557 5.86 255.3 34 84.0 7.0858 0.574 32.2718 5.84 254.1 23 85.0 7.0829 0.553 32.2914 5.81 253.1 26 86.1 7.0810 0.579 32.3004 5.78 251.7 40 86.9 7.0800 0.566 32.3043 5.77 251.3 28 88.0 7.0793 0.558 32.3040 5.77 251.3 15 89.0 7.0792 0.558 32.3053 5.76 250.7 14 90.0 7.0742 0.544 32.3350 5.72 249.1 16 91.0 7.0648 0.527 32.3905 5.65 246.1 25 92.0 7.0610 0.516 32.4186 5.58 242.9 19 93.0 7.0563 0.510 32.4563 5.51 239.9 13 94.1 7.0403 0.437 32.5890 5.36 233.5 20 95.0 7.0372 0.438 32.6138 5.26 229.0 23 96.0 7.0347 0.430 32.6355 5.20 226.3 23 97.0 7.0262 0.407 32.6882 5.12 222.8 34 97.7 7.0139 0.404 32.7560 5.01 218.3 7