*2012/05/19 15:23:59.68 *IOS HEADER VERSION 1.10 2011/10/26 2011/10/26 *FILE START TIME : UTC 2012/03/09 19:13:05.000 TIME INCREMENT : 0 0 0 0.416667E-01 0 ! (day hr min sec ms) NUMBER OF RECORDS : 99 DATA DESCRIPTION : CTD FILE TYPE : ASCII CRC : 7BA88C15 NUMBER OF CHANNELS : 7 $TABLE: CHANNELS ! No Name Units Minimum Maximum !--- -------------------------- --------------- -------------- -------------- 1 Pressure decibar 4.1 101.92 2 Temperature:Secondary 'deg C (ITS90)' 7.2437 8.5773 3 Fluorescence:URU:Wetlabs mg/m^3 0.334 1.273 4 Salinity:T1:C1 PSS-78 25.5848 29.7733 5 Oxygen:Dissolved:SBE mL/L 4.57 6.256 6 Oxygen:Dissolved:SBE umol/kg 199.5039 273.8138 7 Number_of_bin_records n/a 18 29 $END $TABLE: CHANNEL DETAIL ! No Pad Start Width Format Type Decimal_Places !--- ---- ----- ----- ------ ---- -------------- 1 -99 ' ' 7 F ' ' 1 2 -99 ' ' 9 F ' ' 4 3 -99 ' ' 8 F ' ' 3 4 -99 ' ' 9 F ' ' 4 5 -99 ' ' 7 F ' ' 2 6 -99 ' ' 6 F ' ' 1 7 ' ' ' ' 5 I I 0 $END $REMARKS This file converted from Sea-Bird file: P:\Cruise_Data_Processing\2012-03\Pro Comments from secondary file: P:\Cruise_Data_Processing\2012-03\Processing\ios\2012-03-0130.cln2 ------------------------------------------------------------------ This file converted from Sea-Bird file: P:\Cruise_Data_Processing\2012-03\Pro $END *ADMINISTRATION MISSION : 2012-03 AGENCY : PBS, Salmon And Freshwater Ecosystems, Nanaimo, B.C. COUNTRY : Canada PROJECT : High Seas Salmon SCIENTIST : Zubkowski T. PLATFORM : W.E. Ricker *LOCATION GEOGRAPHIC AREA : Juan de Fuca / WCVI / Queen Charlotte Strait STATION : IVI 19 EVENT NUMBER : 130 LATITUDE : 50 35.24000 N ! (deg min) LONGITUDE : 127 39.11000 W ! (deg min) WATER DEPTH : 111 *INSTRUMENT TYPE : Sea-Bird CTD MODEL : SBE-911plus SERIAL NUMBER : 0506 $REMARKS SOFTWARE VERSION SEASAVE V 7.21D Comments from secondary file: P:\Cruise_Data_Processing\2012-03\Processing\ios\2012-03-0130.cln2 ------------------------------------------------------------------ SOFTWARE VERSION SEASAVE V 7.21D $END *HISTORY $TABLE: PROGRAMS ! Name Vers Date Time Recs In Recs Out ! -------- ------ ---------- -------- --------- --------- SBE_IOS 3.1.1 2012/05/02 17:12:24 8674 8674 CLEAN 5.0.4 2012/05/02 17:16:33 8674 8674 SHIFTDAT 3.4 2012/05/04 10:05:05 8674 8674 SHIFTDAT 3.4 2012/05/04 13:36:00 8674 8674 SHIFTDAT 3.4 2012/05/04 13:41:07 8674 8674 DELETE 6.3 2012/05/04 13:46:12 8674 2534 CTDEDIT 4.61 2012/05/07 17:18:18 2534 2482 MERGE 3.4 2012/05/18 16:37:13 2482 2482 CALIB 11.7 2012/05/18 16:42:50 2482 2482 FILTERS 4.3 2012/05/18 17:02:42 2482 2482 BINAVE 4.1.1 2012/05/18 17:03:39 2482 99 REMOVECH 8.1.1 2012/05/18 17:03:59 99 99 CHGUNITS 3.0 2012/05/18 17:05:02 99 99 REORDER 1.3 2012/05/19 15:21:46 ? ? HDREDIT2 2.5.1 2012/05/19 15:23:59 ? ? $END $REMARKS -CLEAN functions: 2012/05/02 17:14:01 20 Interpolation by Record Number, in Pressure Set event to last 4 characters of file name -The following SHIFT parameters were used. Shift Channel: Fluorescence:Wetlabs:ECO-AFL # of Records to Advance (-ve for Delay): At REC# 0 Shift= 12.00 -The following SHIFT parameters were used. Shift Channel: Conductivity:Primary # of Records to Advance (-ve for Delay): At REC# 0 Shift= -0.50 Salinity was recalculated after shift -The following SHIFT parameters were used. Shift Channel: Conductivity:Secondary # of Records to Advance (-ve for Delay): At REC# 0 Shift= -0.70 Salinity was recalculated after shift -The following DELETE parameters were used: Surface Record Removal: Last Press Min Maximum Surface Pressure (relative): 10.00 Surface Swell Pressure Tolerance: 1.00 Pressure filtered over width: 15 Swells deleted. Warning message if pressure difference of 2.00 Drop rates < 0.30m/s (calculated over 11 points) will be deleted. Drop rate applies in the range 10.00 to 91.59 dbars Sample interval (from FILE section of header) = 0.042 seconds. -CTDEDIT 2012/05/07 17:18:18 52 records were deleted in this editing session. 17 changes in channel Salinity:T1:C1 -The following MERGE parameters were used: 2012/05/18 16:35:26 2012/05/18 16:35:27 2012/05/18 16:35: Merge Channel: Scan_Number Merge Scheme Used: Add Secondary to Primary Overlap Scheme Used: Keep Primary Primary Channels to Include: Scan_Number, Pressure, Temperature:Primary, Temperature:Secondary, Conductivity:Primary, Conductivity:Secondary, Fluorescence:Wetlabs:ECO-AFL, Oxygen:Voltage:SBE, pH:SBE, Descent_Rate, Status:Pump, Salinity:T0:C0, Salinity:T1:C1, Flag Secondary Channels to Include: Oxygen:Dissolved:SBE Primary file : P:\Cruise_Data_Processing\2012-03\Processing\ios\2012-03-0130.edt Secondary file: P:\Cruise_Data_Processing\2012-03\Processing\ios\2012-03-0130.cln2 Comments from secondary file: P:\Cruise_Data_Processing\2012-03\Processing\ios\2012-03-0130.cln2 ------------------------------------------------------------------ -CLEAN functions: 2012/05/18 15:57:28 20 Reset #RECS, MIN & MAX values in header. -The following DELETE parameters were used: Surface Record Removal: Last Press Min Maximum Surface Pressure (relative): 10.00 Surface Swell Pressure Tolerance: 1.00 Pressure filtered over width: 15 Swells deleted. Warning message if pressure difference of 2.00 Drop rates < 0.30m/s (calculated over 11 points) will be deleted. Drop rate applies in the range 10.00 to 91.59 dbars Sample interval (from FILE section of header) = 0.042 seconds. -CLEAN functions: 2012/05/18 16:33:58 20 Remove Sea-Bird comments from the header. -CALIB parameters: 2012/05/18 16:42:50 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = P:\Cruise_Data_Processing\2012-03\Processing\doc\2012-03-Recal1.CCF Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 2 Pressure dbars 10 0.1200000E+01 0.1000000E+01 13 Salinity:T1:C1 PSS-78 10 0.4000000E-02 0.1000000E+01 -The following FILTER parameters were used. Median filter was used. Filter width = 11 The following channel(s) were filtered. Fluorescence:Wetlabs:ECO-AFL -The following BINAVE parameters were used: Bin channel = Pressure Averaging interval = 1.00 Minimum bin value = 0.000 Average value was used Interpolated values were NOT used for empty bins Channel 'NUMBER_OF_BIN_RECORDS' was added to file. -REMOVECH 2012/05/18 17:03:59 The following CHANNEL(S) were removed: Scan_Number Temperature:Primary [deg C (ITS90)] Conductivity:Primary [S/m] Conductivity:Secondary [S/m] Oxygen:Voltage:SBE [volts] pH:SBE [pH Units] Descent_Rate [m/s] Status:Pump Salinity:T0:C0 [PSS-78] Flag -CHANGE units: 'Oxygen:Dissolved:SBE [mL/L]' changed from mL/L to umol/kg -HEADER EDITS: 2012/05/19 15:23:59 Applied edit header: P:\Cruise_Data_Processing\2012-03\Processing\doc\2012-03-hdr.txt Channel 1: Pressure [decibar] Units: dbars ==> decibar Format: F11.2 ==> F7.1 Channel 3: Fluorescence:URU:Wetlabs [mg/m^3] Name: Fluorescence:Wetlabs:ECO-AFL ==> Fluorescence:URU:Wetlabs Channel 5: Oxygen:Dissolved:SBE [mL/L] Format: F8.3 ==> F7.2 $END *COMMENTS SBE HEADER Sea-Bird SBE 9 Data File: FileName = C:\Data\2012-03\2012-03-0130.hex Software Version Seasave V 7.21d Temperature SN = 2038 Conductivity SN = 3394 Number of Bytes Per Scan = 40 Number of Voltage Words = 5 Number of Scans Averaged by the Deck Unit = 1 System UpLoad Time = Mar 09 2012 18:13:43 NMEA Latitude = 50 35.24 N NMEA Longitude = 127 39.11 W NMEA UTC (Time) = Mar 09 2012 19:13:05 Store Lat/Lon Data = Append to Every Scan SBE 11plus V 5.1e number of scans to average = 1 pressure baud rate = 9600 NMEA baud rate = 4800 surface PAR voltage added to scan A/D offset = 3 Latitude/Longitude added to scan GPIB address = 1 advance primary conductivity 0.073 seconds advance secondary conductivity 0.073 seconds S> Ricker 2012-03 Station: ivi 19 Depth(m): 111 System UTC = Mar 09 2012 18:13:43 # nquan = 15 # nvalues = 8674 # units = specified # name 0 = scan: Scan Count # name 1 = prDM: Pressure, Digiquartz [db] # name 2 = t090C: Temperature [ITS-90, deg C] # name 3 = t190C: Temperature, 2 [ITS-90, deg C] # name 4 = c0S/m: Conductivity [S/m] # name 5 = c1S/m: Conductivity, 2 [S/m] # name 6 = flECO-AFL: Fluorescence, WET Labs ECO-AFL/FL [mg/m^3] # name 7 = sbeox0V: Oxygen raw, SBE 43 [V] # name 8 = ph: pH # name 9 = dz/dtM: Descent Rate [m/s] # name 10 = pumps: Pump Status # name 11 = sal00: Salinity, Practical [PSU] # name 12 = sal11: Salinity, Practical, 2 [PSU] # name 13 = sbeox0ML/L: Oxygen, SBE 43 [ml/l], WS = 2 # name 14 = flag: flag # span 0 = 1, 8674 # span 1 = 1.549, 101.589 # span 2 = 6.9513, 8.5797 # span 3 = 6.9149, 8.5815 # span 4 = 2.376282, 3.121139 # span 5 = 2.360282, 3.121502 # span 6 = 0.2567, 1.5534 # span 7 = 2.0074, 2.5801 # span 8 = 7.434, 8.247 # span 9 = -1.707, 2.022 # span 10 = 0, 1 # span 11 = 22.6602, 29.7702 # span 12 = 22.5150, 29.7716 # span 13 = 4.81854, 7.20672 # span 14 = 0.0000e+00, 0.0000e+00 # interval = seconds: 0.0416667 # start_time = Mar 09 2012 19:13:05 [NMEA time, header] # bad_flag = -9.990e-29 # # # # # 2038 # 13-Apr-11 # 1 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.000 # 4.34121727e-003 # 6.27761521e-004 # 1.93344285e-005 # 1.38951411e-006 # 1000.000 # 1.00000000 # 0.0000 # # # # # # 3394 # 29-Mar-11 # 1 # # 0.0000 # 2000.0000 # 0 # # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.0 # -9.57000000e-008 # # # -9.62629272e+000 # 1.47700223e+000 # -1.98297688e-003 # 2.38475512e-004 # -9.57000000e-008 # 3.2500e-006 # # 0.00000000e+000 # # 1.00000000 # 0.00000 # # # # # # 69698 # 15-Apr-11 # -4.957807e+004 # -1.280011e+000 # 1.485710e-002 # 4.021200e-002 # 0.000000e+000 # 3.037224e+001 # -6.696188e-004 # 3.897170e-006 # 3.287590e-009 # 0.99992459 # -1.37675 # 0.000000e+000 # 1.280810e-002 # -9.210198e+000 # # # # # # 4883 # 31-Mar-11 # 1 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.000 # 4.38024578e-003 # 6.40182173e-004 # 2.13732036e-005 # 1.78729483e-006 # 1000.000 # 1.00000000 # 0.0000 # # # # # # 1763 # 29-Mar-11 # 1 # # 0.0000 # 2000.0000 # 0 # # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.0 # -9.57000000e-008 # # # -4.22277306e+000 # 5.07762678e-001 # -5.42749610e-004 # 5.32046027e-005 # -9.57000000e-008 # 3.2500e-006 # # 0.00000000e+000 # # 1.00000000 # 0.00000 # # # # # # # # # # # # 1119 # 29-Mar-11p # 1 # # # 0.0000 # 0.0000e+000 # 0.0000 # 0.00e+000 # 0.0000 # 0.0 # # # # 4.7070e-001 # -0.4812 # -1.5691e-003 # 7.1741e-005 # -1.3719e-006 # 2.5826e+000 # 1.92630e-004 # -4.64800e-002 # 3.6000e-002 # 1.1300 #

-3.3000e-002

#

5.0000e+003

#

1.4500e+003

# # # # # # # 2215 # Mar 2012 # 6.00000000e+000 # # 0.0256 # # # # # # 0851 # 21-Apr-11 # 4.6180 # 2.5063 # # # # # # # # # # # # # # # # # # # # 0.00000000 # 0.00000000 # # # # datcnv_date = May 02 2012 16:07:46, 7.21d [datcnv_vars = 11] # datcnv_in = P:\Cruise_Data_Processing\2012-03\RAW\CTD\2012-03-0130.hex P:\Crui se_Data_Processing\2012-03\Processing\doc\2012-03-ctd-new.xmlcon # datcnv_skipover = 0 # datcnv_ox_hysteresis_correction = yes # wildedit_date = May 02 2012 16:10:52, 7.21d # wildedit_in = P:\Cruise_Data_Processing\2012-03\Processing\convert\2012-03-013 0.cnv # wildedit_pass1_nstd = 2.0 # wildedit_pass2_nstd = 5.0 # wildedit_pass2_mindelta = 0.000e+000 # wildedit_npoint = 50 # wildedit_vars = prDM t090C t190C c0S/m c1S/m # wildedit_excl_bad_scans = yes # alignctd_date = May 02 2012 16:14:43, 7.21d # alignctd_in = P:\Cruise_Data_Processing\2012-03\Processing\wildedit\2012-03-01 30.cnv # alignctd_adv = sbeox0V 2.000 # celltm_date = May 02 2012 16:16:24, 7.21d # celltm_in = P:\Cruise_Data_Processing\2012-03\Processing\align\2012-03-0130.cn v # celltm_alpha = 0.0200, 0.0200 # celltm_tau = 7.0000, 7.0000 # celltm_temp_sensor_use_for_cond = primary, secondary # Derive_date = May 02 2012 16:26:20, 7.21d [derive_vars = 3] # Derive_in = P:\Cruise_Data_Processing\2012-03\Processing\celltm\2012-03-0130.c nv P:\Cruise_Data_Processing\2012-03\Processing\doc\2012-03-ctd-new.xmlcon # derive_time_window_docdt = seconds: 2 # derive_ox_tau_correction = yes # file_type = ascii END* CTDEDIT was used to remove surface records; salinity was cleaned lightly. Data Processing Notes: ---------------------- Fluorescence data are nominal and unedited, except that some records were removed in editing temperature and salinity. There was no calibration sampling for dissolved oxygen, but the results of cruise 2012-04 were used to derive DO concentration. Recalibration of CTD salinity was based on many 10m bottles and 1 deep bottle from this cruise and from sampling during 2012-04. Both comparisons were limited by great variability, but salinity data are likely good to +/-0.003. The SBE pH sensor malfunctioned throughout the cruise. It was discovered late in processing that the dissolved oxygen concentration had been calibrated incorrectly, so the data were re-derived with the right parameters and put through all the same steps as originally run. Because the temperature and salinity data had already been edited, the corrected dissolved oxygen data were merged with the other channels at a stage after editing. This has no ill effects on any of the data, but the Dissolved Oxygen calibrations shown in the headers have incorrect values for SOC and VOffset; they should be 0.4442 and -0.4822, respectively. For details on the processing see processing report: 2012-03-proc.doc. *CALIBRATION $TABLE: CORRECTED CHANNELS ! Name Units Fmla Pad Coefficients ! ---------------- -------- ---- ------ ------------ Pressure dbars 10 -99 () (1.2 1) Salinity:T1:C1 PSS-78 10 -99 () (0.4E-02 1) $END !--1--- ---2---- ---3--- ---4---- --5--- --6-- -7-- !Pressu Temperat Fluores Salinity Oxygen Oxyge Numb !re ure: cence: :T1:C1 : n: er_o ! Secondar URU: Dissol Disso ~bin ! y Wetlabs ved: lved: _rec ! SBE SBE ords !------ -------- ------- -------- ------ ----- ---- *END OF HEADER 4.1 7.2437 1.273 25.5848 6.26 273.8 19 5.1 7.3364 1.084 26.2812 6.07 265.6 25 6.0 7.4574 0.930 27.0606 5.92 258.7 28 7.0 7.5095 0.813 27.3043 5.86 256.2 29 8.0 7.5762 0.688 27.6505 5.79 253.1 26 9.0 7.6502 0.568 27.9417 5.73 250.2 28 10.0 7.7397 0.510 28.1877 5.68 247.9 27 11.0 7.9112 0.445 28.4502 5.53 241.5 25 12.0 8.1712 0.439 28.6594 5.25 229.4 28 13.0 8.3512 0.403 28.8142 5.01 218.6 27 14.0 8.4089 0.403 28.9214 4.87 212.5 25 15.0 8.4806 0.390 28.9800 4.76 208.0 28 16.0 8.5569 0.400 29.0438 4.65 203.0 24 17.0 8.5722 0.404 29.0803 4.59 200.3 24 18.0 8.5717 0.392 29.1264 4.57 199.7 26 19.0 8.5773 0.400 29.1788 4.57 199.5 24 20.0 8.5695 0.405 29.1985 4.57 199.7 26 21.0 8.4862 0.389 29.2480 4.66 203.5 26 22.0 8.4128 0.377 29.2816 4.77 208.0 26 23.0 8.3884 0.356 29.3055 4.82 210.4 24 24.0 8.3218 0.357 29.3235 4.89 213.5 26 25.0 8.2044 0.347 29.3485 5.00 218.1 26 26.0 8.1541 0.370 29.3773 5.07 221.2 25 27.0 8.0912 0.341 29.4073 5.14 224.3 27 28.0 8.0606 0.344 29.4157 5.19 226.6 25 29.0 8.0353 0.357 29.4451 5.21 227.3 25 30.0 8.0193 0.349 29.4546 5.23 228.4 25 31.0 7.9803 0.346 29.4517 5.29 230.7 25 32.0 7.9500 0.343 29.4502 5.34 233.0 23 33.0 7.9022 0.347 29.4576 5.39 235.1 26 34.0 7.8943 0.340 29.4636 5.41 236.3 26 35.0 7.8863 0.348 29.4833 5.43 236.8 25 36.0 7.8703 0.338 29.4908 5.44 237.4 25 37.0 7.8642 0.334 29.5054 5.45 237.6 26 38.0 7.8247 0.366 29.5119 5.48 239.2 25 39.0 7.7693 0.386 29.5196 5.55 242.1 24 40.0 7.7614 0.380 29.5321 5.58 243.4 25 41.0 7.7709 0.360 29.5419 5.58 243.6 26 42.0 7.7791 0.352 29.5471 5.58 243.3 25 43.0 7.7860 0.354 29.5530 5.57 243.0 26 44.0 7.7889 0.353 29.5573 5.56 242.8 24 45.0 7.7759 0.376 29.5609 5.58 243.3 24 46.0 7.7472 0.392 29.5667 5.59 243.8 26 47.0 7.7293 0.401 29.5718 5.60 244.2 25 48.0 7.7281 0.402 29.5750 5.60 244.5 25 49.0 7.7289 0.387 29.5775 5.61 244.8 26 50.0 7.7280 0.396 29.5793 5.61 244.9 25 51.0 7.7275 0.410 29.5813 5.61 244.7 25 52.0 7.7251 0.411 29.5832 5.60 244.5 26 53.0 7.7252 0.390 29.5884 5.60 244.5 18 54.0 7.7251 0.407 29.5954 5.61 244.6 26 55.0 7.7241 0.414 29.5997 5.60 244.5 25 56.0 7.7244 0.406 29.6027 5.60 244.5 25 57.0 7.7250 0.402 29.6038 5.60 244.4 26 58.0 7.7225 0.410 29.6072 5.60 244.2 26 59.0 7.7211 0.400 29.6145 5.59 244.1 25 60.0 7.7195 0.418 29.6252 5.59 244.0 25 61.0 7.7187 0.407 29.6306 5.59 244.0 26 62.0 7.7189 0.401 29.6375 5.59 243.8 24 63.0 7.7188 0.407 29.6428 5.58 243.6 26 64.0 7.7192 0.435 29.6448 5.59 243.7 27 65.0 7.7196 0.418 29.6467 5.59 243.8 25 66.0 7.7201 0.410 29.6511 5.59 243.8 24 67.0 7.7208 0.402 29.6536 5.59 244.0 24 68.0 7.7216 0.399 29.6544 5.60 244.2 25 69.0 7.7224 0.398 29.6561 5.60 244.2 25 70.0 7.7222 0.390 29.6587 5.59 244.1 26 71.0 7.7215 0.396 29.6602 5.60 244.3 23 72.0 7.7217 0.397 29.6644 5.60 244.3 20 73.0 7.7232 0.394 29.6688 5.59 244.1 20 74.0 7.7234 0.394 29.6739 5.59 244.1 20 75.0 7.7238 0.401 29.6778 5.60 244.2 21 76.0 7.7240 0.388 29.6807 5.60 244.2 22 77.0 7.7245 0.386 29.6857 5.60 244.3 25 78.0 7.7246 0.418 29.6875 5.60 244.3 25 79.0 7.7254 0.395 29.6906 5.60 244.4 24 80.0 7.7259 0.391 29.6931 5.61 244.6 25 81.0 7.7262 0.395 29.6952 5.61 244.6 25 82.0 7.7266 0.374 29.6978 5.61 244.7 25 83.0 7.7274 0.389 29.7020 5.61 244.6 25 84.0 7.7279 0.395 29.7054 5.61 244.7 24 85.0 7.7285 0.376 29.7088 5.61 245.0 24 86.0 7.7298 0.394 29.7163 5.61 244.9 25 87.0 7.7306 0.377 29.7194 5.61 244.7 25 88.0 7.7314 0.384 29.7231 5.61 244.6 24 89.0 7.7318 0.371 29.7252 5.61 244.7 25 90.0 7.7323 0.383 29.7274 5.61 244.9 20 91.0 7.7360 0.377 29.7316 5.61 244.9 24 92.0 7.7392 0.362 29.7342 5.61 244.9 25 93.0 7.7416 0.353 29.7368 5.61 244.9 25 94.0 7.7465 0.370 29.7436 5.61 244.9 24 95.0 7.7488 0.365 29.7478 5.61 244.7 25 96.0 7.7498 0.361 29.7509 5.60 244.4 24 97.0 7.7513 0.365 29.7538 5.60 244.5 25 98.0 7.7546 0.354 29.7580 5.60 244.3 23 99.0 7.7570 0.347 29.7633 5.59 243.9 26 100.0 7.7570 0.351 29.7656 5.58 243.5 28 101.0 7.7567 0.347 29.7686 5.57 242.9 28 101.9 7.7578 0.352 29.7733 5.55 242.1 24