*2012/05/19 15:23:59.48 *IOS HEADER VERSION 1.10 2011/10/26 2011/10/26 *FILE START TIME : UTC 2012/03/08 22:23:49.000 TIME INCREMENT : 0 0 0 0.416667E-01 0 ! (day hr min sec ms) NUMBER OF RECORDS : 92 DATA DESCRIPTION : CTD FILE TYPE : ASCII CRC : 181B13C5 NUMBER OF CHANNELS : 7 $TABLE: CHANNELS ! No Name Units Minimum Maximum !--- -------------------------- --------------- -------------- -------------- 1 Pressure decibar 3.29 93.75 2 Temperature:Secondary 'deg C (ITS90)' 7.3276 7.7197 3 Fluorescence:URU:Wetlabs mg/m^3 0.252 1.215 4 Salinity:T1:C1 PSS-78 27.3873 32.9644 5 Oxygen:Dissolved:SBE mL/L 4.448 6.354 6 Oxygen:Dissolved:SBE umol/kg 193.5845 277.7206 7 Number_of_bin_records n/a 6 56 $END $TABLE: CHANNEL DETAIL ! No Pad Start Width Format Type Decimal_Places !--- ---- ----- ----- ------ ---- -------------- 1 -99 ' ' 7 F ' ' 1 2 -99 ' ' 9 F ' ' 4 3 -99 ' ' 8 F ' ' 3 4 -99 ' ' 9 F ' ' 4 5 -99 ' ' 7 F ' ' 2 6 -99 ' ' 6 F ' ' 1 7 ' ' ' ' 5 I I 0 $END $REMARKS This file converted from Sea-Bird file: P:\Cruise_Data_Processing\2012-03\Pro Comments from secondary file: P:\Cruise_Data_Processing\2012-03\Processing\ios\2012-03-0118.cln2 ------------------------------------------------------------------ This file converted from Sea-Bird file: P:\Cruise_Data_Processing\2012-03\Pro $END *ADMINISTRATION MISSION : 2012-03 AGENCY : PBS, Salmon And Freshwater Ecosystems, Nanaimo, B.C. COUNTRY : Canada PROJECT : High Seas Salmon SCIENTIST : Zubkowski T. PLATFORM : W.E. Ricker *LOCATION GEOGRAPHIC AREA : Juan de Fuca / WCVI / Queen Charlotte Strait STATION : IVI 15 EVENT NUMBER : 118 LATITUDE : 50 29.25000 N ! (deg min) LONGITUDE : 127 45.62000 W ! (deg min) WATER DEPTH : 103 *INSTRUMENT TYPE : Sea-Bird CTD MODEL : SBE-911plus SERIAL NUMBER : 0506 $REMARKS SOFTWARE VERSION SEASAVE V 7.21D Comments from secondary file: P:\Cruise_Data_Processing\2012-03\Processing\ios\2012-03-0118.cln2 ------------------------------------------------------------------ SOFTWARE VERSION SEASAVE V 7.21D $END *HISTORY $TABLE: PROGRAMS ! Name Vers Date Time Recs In Recs Out ! -------- ------ ---------- -------- --------- --------- SBE_IOS 3.1.1 2012/05/02 17:12:12 9440 9440 CLEAN 5.0.4 2012/05/02 17:16:20 9440 9440 SHIFTDAT 3.4 2012/05/04 10:04:52 9440 9440 SHIFTDAT 3.4 2012/05/04 13:35:47 9440 9440 SHIFTDAT 3.4 2012/05/04 13:40:55 9440 9440 DELETE 6.3 2012/05/04 13:46:03 9440 2857 CTDEDIT 4.61 2012/05/07 16:53:38 2857 2550 MERGE 3.4 2012/05/18 16:37:05 2550 2550 CALIB 11.7 2012/05/18 16:42:46 2550 2550 FILTERS 4.3 2012/05/18 17:02:39 2550 2550 BINAVE 4.1.1 2012/05/18 17:03:37 2550 92 REMOVECH 8.1.1 2012/05/18 17:03:59 92 92 CHGUNITS 3.0 2012/05/18 17:05:01 92 92 REORDER 1.3 2012/05/19 15:21:46 ? ? HDREDIT2 2.5.1 2012/05/19 15:23:59 ? ? $END $REMARKS -CLEAN functions: 2012/05/02 17:14:01 20 Interpolation by Record Number, in Pressure Set event to last 4 characters of file name -The following SHIFT parameters were used. Shift Channel: Fluorescence:Wetlabs:ECO-AFL # of Records to Advance (-ve for Delay): At REC# 0 Shift= 12.00 -The following SHIFT parameters were used. Shift Channel: Conductivity:Primary # of Records to Advance (-ve for Delay): At REC# 0 Shift= -0.50 Salinity was recalculated after shift -The following SHIFT parameters were used. Shift Channel: Conductivity:Secondary # of Records to Advance (-ve for Delay): At REC# 0 Shift= -0.70 Salinity was recalculated after shift -The following DELETE parameters were used: Surface Record Removal: Last Press Min Maximum Surface Pressure (relative): 10.00 Surface Swell Pressure Tolerance: 1.00 Pressure filtered over width: 15 Swells deleted. Warning message if pressure difference of 2.00 Drop rates < 0.30m/s (calculated over 11 points) will be deleted. Drop rate applies in the range 10.00 to 83.37 dbars Sample interval (from FILE section of header) = 0.042 seconds. -CTDEDIT 2012/05/07 16:53:38 307 records were deleted in this editing session. 23 changes in channel Salinity:T1:C1 -The following MERGE parameters were used: 2012/05/18 16:35:26 2012/05/18 16:35:27 2012/05/18 16:35: Merge Channel: Scan_Number Merge Scheme Used: Add Secondary to Primary Overlap Scheme Used: Keep Primary Primary Channels to Include: Scan_Number, Pressure, Temperature:Primary, Temperature:Secondary, Conductivity:Primary, Conductivity:Secondary, Fluorescence:Wetlabs:ECO-AFL, Oxygen:Voltage:SBE, pH:SBE, Descent_Rate, Status:Pump, Salinity:T0:C0, Salinity:T1:C1, Flag Secondary Channels to Include: Oxygen:Dissolved:SBE Primary file : P:\Cruise_Data_Processing\2012-03\Processing\ios\2012-03-0118.edt Secondary file: P:\Cruise_Data_Processing\2012-03\Processing\ios\2012-03-0118.cln2 Comments from secondary file: P:\Cruise_Data_Processing\2012-03\Processing\ios\2012-03-0118.cln2 ------------------------------------------------------------------ -CLEAN functions: 2012/05/18 15:57:28 20 Reset #RECS, MIN & MAX values in header. -The following DELETE parameters were used: Surface Record Removal: Last Press Min Maximum Surface Pressure (relative): 10.00 Surface Swell Pressure Tolerance: 1.00 Pressure filtered over width: 15 Swells deleted. Warning message if pressure difference of 2.00 Drop rates < 0.30m/s (calculated over 11 points) will be deleted. Drop rate applies in the range 10.00 to 83.37 dbars Sample interval (from FILE section of header) = 0.042 seconds. -CLEAN functions: 2012/05/18 16:33:58 20 Remove Sea-Bird comments from the header. -CALIB parameters: 2012/05/18 16:42:46 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = P:\Cruise_Data_Processing\2012-03\Processing\doc\2012-03-Recal1.CCF Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 2 Pressure dbars 10 0.1200000E+01 0.1000000E+01 13 Salinity:T1:C1 PSS-78 10 0.4000000E-02 0.1000000E+01 -The following FILTER parameters were used. Median filter was used. Filter width = 11 The following channel(s) were filtered. Fluorescence:Wetlabs:ECO-AFL -The following BINAVE parameters were used: Bin channel = Pressure Averaging interval = 1.00 Minimum bin value = 0.000 Average value was used Interpolated values were NOT used for empty bins Channel 'NUMBER_OF_BIN_RECORDS' was added to file. -REMOVECH 2012/05/18 17:03:59 The following CHANNEL(S) were removed: Scan_Number Temperature:Primary [deg C (ITS90)] Conductivity:Primary [S/m] Conductivity:Secondary [S/m] Oxygen:Voltage:SBE [volts] pH:SBE [pH Units] Descent_Rate [m/s] Status:Pump Salinity:T0:C0 [PSS-78] Flag -CHANGE units: 'Oxygen:Dissolved:SBE [mL/L]' changed from mL/L to umol/kg -HEADER EDITS: 2012/05/19 15:23:59 Applied edit header: P:\Cruise_Data_Processing\2012-03\Processing\doc\2012-03-hdr.txt Channel 1: Pressure [decibar] Units: dbars ==> decibar Format: F11.2 ==> F7.1 Channel 3: Fluorescence:URU:Wetlabs [mg/m^3] Name: Fluorescence:Wetlabs:ECO-AFL ==> Fluorescence:URU:Wetlabs Channel 5: Oxygen:Dissolved:SBE [mL/L] Format: F8.3 ==> F7.2 $END *COMMENTS SBE HEADER Sea-Bird SBE 9 Data File: FileName = C:\Data\2012-03\2012-03-0118.hex Software Version Seasave V 7.21d Temperature SN = 2038 Conductivity SN = 3394 Number of Bytes Per Scan = 40 Number of Voltage Words = 5 Number of Scans Averaged by the Deck Unit = 1 System UpLoad Time = Mar 08 2012 21:24:27 NMEA Latitude = 50 29.25 N NMEA Longitude = 127 45.62 W NMEA UTC (Time) = Mar 08 2012 22:23:49 Store Lat/Lon Data = Append to Every Scan SBE 11plus V 5.1e number of scans to average = 1 pressure baud rate = 9600 NMEA baud rate = 4800 surface PAR voltage added to scan A/D offset = 3 Latitude/Longitude added to scan GPIB address = 1 advance primary conductivity 0.073 seconds advance secondary conductivity 0.073 seconds S> Ricker 2012-03 Station: ivi 15 Depth(m): 103 System UTC = Mar 08 2012 21:24:27 # nquan = 15 # nvalues = 9440 # units = specified # name 0 = scan: Scan Count # name 1 = prDM: Pressure, Digiquartz [db] # name 2 = t090C: Temperature [ITS-90, deg C] # name 3 = t190C: Temperature, 2 [ITS-90, deg C] # name 4 = c0S/m: Conductivity [S/m] # name 5 = c1S/m: Conductivity, 2 [S/m] # name 6 = flECO-AFL: Fluorescence, WET Labs ECO-AFL/FL [mg/m^3] # name 7 = sbeox0V: Oxygen raw, SBE 43 [V] # name 8 = ph: pH # name 9 = dz/dtM: Descent Rate [m/s] # name 10 = pumps: Pump Status # name 11 = sal00: Salinity, Practical [PSU] # name 12 = sal11: Salinity, Practical, 2 [PSU] # name 13 = sbeox0ML/L: Oxygen, SBE 43 [ml/l], WS = 2 # name 14 = flag: flag # span 0 = 1, 9440 # span 1 = -0.091, 93.373 # span 2 = 7.3001, 7.7388 # span 3 = 7.3009, 7.7325 # span 4 = 2.830921, 3.382271 # span 5 = 2.836721, 3.382493 # span 6 = 0.1761, 20.6230 # span 7 = 1.9523, 2.5422 # span 8 = 7.595, 8.351 # span 9 = -1.643, 2.043 # span 10 = 0, 1 # span 11 = 27.1662, 32.9677 # span 12 = 27.2243, 32.9698 # span 13 = 4.70676, 6.78911 # span 14 = 0.0000e+00, 0.0000e+00 # interval = seconds: 0.0416667 # start_time = Mar 08 2012 22:23:49 [NMEA time, header] # bad_flag = -9.990e-29 # # # # # 2038 # 13-Apr-11 # 1 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.000 # 4.34121727e-003 # 6.27761521e-004 # 1.93344285e-005 # 1.38951411e-006 # 1000.000 # 1.00000000 # 0.0000 # # # # # # 3394 # 29-Mar-11 # 1 # # 0.0000 # 2000.0000 # 0 # # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.0 # -9.57000000e-008 # # # -9.62629272e+000 # 1.47700223e+000 # -1.98297688e-003 # 2.38475512e-004 # -9.57000000e-008 # 3.2500e-006 # # 0.00000000e+000 # # 1.00000000 # 0.00000 # # # # # # 69698 # 15-Apr-11 # -4.957807e+004 # -1.280011e+000 # 1.485710e-002 # 4.021200e-002 # 0.000000e+000 # 3.037224e+001 # -6.696188e-004 # 3.897170e-006 # 3.287590e-009 # 0.99992459 # -1.37675 # 0.000000e+000 # 1.280810e-002 # -9.210198e+000 # # # # # # 4883 # 31-Mar-11 # 1 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.000 # 4.38024578e-003 # 6.40182173e-004 # 2.13732036e-005 # 1.78729483e-006 # 1000.000 # 1.00000000 # 0.0000 # # # # # # 1763 # 29-Mar-11 # 1 # # 0.0000 # 2000.0000 # 0 # # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.0 # -9.57000000e-008 # # # -4.22277306e+000 # 5.07762678e-001 # -5.42749610e-004 # 5.32046027e-005 # -9.57000000e-008 # 3.2500e-006 # # 0.00000000e+000 # # 1.00000000 # 0.00000 # # # # # # # # # # # # 1119 # 29-Mar-11p # 1 # # # 0.0000 # 0.0000e+000 # 0.0000 # 0.00e+000 # 0.0000 # 0.0 # # # # 4.7070e-001 # -0.4812 # -1.5691e-003 # 7.1741e-005 # -1.3719e-006 # 2.5826e+000 # 1.92630e-004 # -4.64800e-002 # 3.6000e-002 # 1.1300 #

-3.3000e-002

#

5.0000e+003

#

1.4500e+003

# # # # # # # 2215 # Mar 2012 # 6.00000000e+000 # # 0.0256 # # # # # # 0851 # 21-Apr-11 # 4.6180 # 2.5063 # # # # # # # # # # # # # # # # # # # # 0.00000000 # 0.00000000 # # # # datcnv_date = May 02 2012 16:07:40, 7.21d [datcnv_vars = 11] # datcnv_in = P:\Cruise_Data_Processing\2012-03\RAW\CTD\2012-03-0118.hex P:\Crui se_Data_Processing\2012-03\Processing\doc\2012-03-ctd-new.xmlcon # datcnv_skipover = 0 # datcnv_ox_hysteresis_correction = yes # wildedit_date = May 02 2012 16:10:49, 7.21d # wildedit_in = P:\Cruise_Data_Processing\2012-03\Processing\convert\2012-03-011 8.cnv # wildedit_pass1_nstd = 2.0 # wildedit_pass2_nstd = 5.0 # wildedit_pass2_mindelta = 0.000e+000 # wildedit_npoint = 50 # wildedit_vars = prDM t090C t190C c0S/m c1S/m # wildedit_excl_bad_scans = yes # alignctd_date = May 02 2012 16:14:39, 7.21d # alignctd_in = P:\Cruise_Data_Processing\2012-03\Processing\wildedit\2012-03-01 18.cnv # alignctd_adv = sbeox0V 2.000 # celltm_date = May 02 2012 16:16:21, 7.21d # celltm_in = P:\Cruise_Data_Processing\2012-03\Processing\align\2012-03-0118.cn v # celltm_alpha = 0.0200, 0.0200 # celltm_tau = 7.0000, 7.0000 # celltm_temp_sensor_use_for_cond = primary, secondary # Derive_date = May 02 2012 16:26:16, 7.21d [derive_vars = 3] # Derive_in = P:\Cruise_Data_Processing\2012-03\Processing\celltm\2012-03-0118.c nv P:\Cruise_Data_Processing\2012-03\Processing\doc\2012-03-ctd-new.xmlcon # derive_time_window_docdt = seconds: 2 # derive_ox_tau_correction = yes # file_type = ascii END* CTDEDIT was used to remove surface records and records corrupted by shed wakes; salinity was cleaned. Data Processing Notes: ---------------------- Fluorescence data are nominal and unedited, except that some records were removed in editing temperature and salinity. There was no calibration sampling for dissolved oxygen, but the results of cruise 2012-04 were used to derive DO concentration. Recalibration of CTD salinity was based on many 10m bottles and 1 deep bottle from this cruise and from sampling during 2012-04. Both comparisons were limited by great variability, but salinity data are likely good to +/-0.003. The SBE pH sensor malfunctioned throughout the cruise. It was discovered late in processing that the dissolved oxygen concentration had been calibrated incorrectly, so the data were re-derived with the right parameters and put through all the same steps as originally run. Because the temperature and salinity data had already been edited, the corrected dissolved oxygen data were merged with the other channels at a stage after editing. This has no ill effects on any of the data, but the Dissolved Oxygen calibrations shown in the headers have incorrect values for SOC and VOffset; they should be 0.4442 and -0.4822, respectively. For details on the processing see processing report: 2012-03-proc.doc. *CALIBRATION $TABLE: CORRECTED CHANNELS ! Name Units Fmla Pad Coefficients ! ---------------- -------- ---- ------ ------------ Pressure dbars 10 -99 () (1.2 1) Salinity:T1:C1 PSS-78 10 -99 () (0.4E-02 1) $END !--1--- ---2---- ---3--- ---4---- --5--- --6-- -7-- !Pressu Temperat Fluores Salinity Oxygen Oxyge Numb !re ure: cence: :T1:C1 : n: er_o ! Secondar URU: Dissol Disso ~bin ! y Wetlabs ved: lved: _rec ! SBE SBE ords !------ -------- ------- -------- ------ ----- ---- *END OF HEADER 3.3 7.3276 1.215 27.3873 6.35 277.7 27 3.5 7.3473 1.158 27.5020 6.35 277.6 6 5.1 7.3814 1.172 27.7261 6.31 275.7 21 5.8 7.4104 1.074 27.9649 6.17 269.6 21 7.3 7.5031 0.892 28.6964 6.02 262.8 17 8.0 7.5089 0.831 28.7626 6.00 261.9 56 8.9 7.5055 0.807 28.7722 6.00 262.1 49 10.0 7.5046 0.771 28.7734 6.01 262.3 39 11.0 7.5124 0.755 28.9321 6.00 261.9 38 12.0 7.5588 0.665 29.2755 5.94 259.3 39 13.0 7.5890 0.537 29.7307 5.90 257.4 39 14.0 7.5848 0.520 29.8120 5.91 257.9 38 15.0 7.5875 0.520 29.8306 5.92 258.1 38 16.0 7.5852 0.509 29.8391 5.91 258.1 37 17.0 7.5814 0.511 29.8950 5.93 258.5 37 18.0 7.5714 0.480 30.5009 5.96 259.7 34 19.0 7.5851 0.424 30.8899 5.97 260.2 38 20.0 7.5879 0.413 30.9395 5.97 260.1 37 21.0 7.6006 0.388 31.1102 5.94 258.8 36 22.0 7.6184 0.378 31.2313 5.92 257.9 37 23.0 7.6244 0.352 31.3838 5.89 256.7 35 24.0 7.6412 0.358 31.4311 5.87 255.8 31 25.0 7.6494 0.337 31.4571 5.86 255.2 30 26.0 7.6394 0.342 31.4668 5.85 254.8 27 27.0 7.6254 0.332 31.5344 5.82 253.8 26 28.0 7.6274 0.332 31.5701 5.80 252.7 29 29.0 7.6297 0.322 31.5813 5.79 252.4 26 30.0 7.6397 0.335 31.6005 5.78 251.7 27 31.0 7.6668 0.322 31.6426 5.72 249.0 26 32.0 7.7197 0.304 31.7547 5.63 245.1 26 33.0 7.7177 0.305 31.7776 5.59 243.3 26 34.0 7.6963 0.292 31.8197 5.57 242.4 26 35.0 7.6722 0.308 31.8493 5.56 242.2 24 36.0 7.6551 0.306 31.8656 5.57 242.4 23 37.0 7.6508 0.317 31.8711 5.57 242.7 25 38.0 7.6504 0.324 31.8714 5.57 242.7 24 39.0 7.6493 0.309 31.8722 5.57 242.6 25 40.0 7.6442 0.334 31.8733 5.57 242.5 25 41.0 7.6414 0.306 31.8757 5.56 242.4 25 42.0 7.6288 0.312 31.8898 5.56 242.1 25 43.0 7.6168 0.323 31.9060 5.54 241.4 25 44.0 7.6020 0.304 31.9813 5.51 239.8 24 45.0 7.5941 0.315 32.0294 5.47 238.2 24 46.0 7.5904 0.307 32.0538 5.45 237.2 25 47.0 7.5892 0.307 32.0673 5.42 236.1 24 48.0 7.5792 0.294 32.1358 5.38 234.5 24 49.0 7.5732 0.299 32.1804 5.33 232.1 24 50.0 7.5635 0.292 32.2924 5.27 229.4 23 51.0 7.5614 0.301 32.3081 5.23 227.8 24 52.0 7.5604 0.294 32.3182 5.21 227.0 25 53.0 7.5488 0.297 32.3593 5.19 226.0 24 54.0 7.5436 0.294 32.3859 5.17 225.2 24 55.0 7.5418 0.295 32.3949 5.16 224.7 24 56.0 7.5391 0.303 32.4063 5.15 224.1 24 57.0 7.5358 0.294 32.4181 5.12 223.1 25 58.0 7.5192 0.291 32.4784 5.08 221.2 24 59.0 7.5057 0.293 32.5241 5.04 219.3 23 60.0 7.4999 0.291 32.5488 4.99 217.2 23 61.0 7.4815 0.280 32.6396 4.90 213.4 24 62.0 7.4621 0.282 32.7085 4.82 210.0 23 63.0 7.4558 0.272 32.7351 4.78 208.2 24 64.0 7.4515 0.282 32.7585 4.74 206.5 25 65.0 7.4444 0.275 32.7942 4.70 204.8 24 66.0 7.4416 0.270 32.8053 4.68 203.9 24 67.0 7.4405 0.274 32.8093 4.67 203.4 24 68.0 7.4380 0.261 32.8148 4.67 203.1 23 69.0 7.4352 0.264 32.8239 4.66 202.8 23 70.0 7.4344 0.289 32.8272 4.65 202.4 23 71.0 7.4340 0.276 32.8324 4.64 202.1 23 72.0 7.4336 0.276 32.8366 4.64 201.7 24 73.0 7.4316 0.270 32.8444 4.62 201.2 23 74.0 7.4297 0.261 32.8516 4.61 200.7 24 75.0 7.4290 0.273 32.8547 4.61 200.7 23 76.0 7.4289 0.281 32.8558 4.61 200.5 25 77.0 7.4289 0.262 32.8567 4.60 200.3 23 78.0 7.4288 0.267 32.8580 4.60 200.3 24 79.0 7.4285 0.274 32.8573 4.60 200.1 24 80.0 7.4270 0.274 32.8647 4.59 199.7 23 81.0 7.4264 0.264 32.8688 4.58 199.5 24 82.0 7.4260 0.274 32.8737 4.58 199.3 26 83.0 7.4260 0.278 32.8737 4.57 199.1 26 84.0 7.4269 0.252 32.8776 4.57 199.0 28 85.0 7.4280 0.261 32.8822 4.56 198.4 27 86.0 7.4288 0.258 32.8820 4.56 198.4 28 87.0 7.4292 0.260 32.8796 4.56 198.3 27 88.0 7.4276 0.253 32.8961 4.54 197.5 27 89.0 7.4194 0.256 32.9157 4.52 196.6 27 90.0 7.4128 0.259 32.9322 4.49 195.4 26 91.0 7.4023 0.269 32.9602 4.46 194.1 26 92.0 7.3998 0.269 32.9631 4.45 193.8 29 93.1 7.3993 0.259 32.9637 4.45 193.6 40 93.8 7.3989 0.262 32.9644 4.45 193.6 47