*2012/05/19 15:23:57.57 *IOS HEADER VERSION 1.10 2011/10/26 2011/10/26 *FILE START TIME : UTC 2012/03/03 18:12:11.000 TIME INCREMENT : 0 0 0 0.416667E-01 0 ! (day hr min sec ms) NUMBER OF RECORDS : 84 DATA DESCRIPTION : CTD FILE TYPE : ASCII CRC : 5E0C04FF NUMBER OF CHANNELS : 7 $TABLE: CHANNELS ! No Name Units Minimum Maximum !--- -------------------------- --------------- -------------- -------------- 1 Pressure decibar 5.11 87.51 2 Temperature:Secondary 'deg C (ITS90)' 7.2713 7.9808 3 Fluorescence:URU:Wetlabs mg/m^3 0.313 1.471 4 Salinity:T1:C1 PSS-78 30.4435 32.4061 5 Oxygen:Dissolved:SBE mL/L 4.842 6.857 6 Oxygen:Dissolved:SBE umol/kg 210.8385 299.0009 7 Number_of_bin_records n/a 11 52 $END $TABLE: CHANNEL DETAIL ! No Pad Start Width Format Type Decimal_Places !--- ---- ----- ----- ------ ---- -------------- 1 -99 ' ' 7 F ' ' 1 2 -99 ' ' 9 F ' ' 4 3 -99 ' ' 8 F ' ' 3 4 -99 ' ' 9 F ' ' 4 5 -99 ' ' 7 F ' ' 2 6 -99 ' ' 6 F ' ' 1 7 ' ' ' ' 5 I I 0 $END $REMARKS This file converted from Sea-Bird file: P:\Cruise_Data_Processing\2012-03\Pro Comments from secondary file: P:\Cruise_Data_Processing\2012-03\Processing\ios\2012-03-0025.cln2 ------------------------------------------------------------------ This file converted from Sea-Bird file: P:\Cruise_Data_Processing\2012-03\Pro $END *ADMINISTRATION MISSION : 2012-03 AGENCY : PBS, Salmon And Freshwater Ecosystems, Nanaimo, B.C. COUNTRY : Canada PROJECT : High Seas Salmon SCIENTIST : Zubkowski T. PLATFORM : W.E. Ricker *LOCATION GEOGRAPHIC AREA : Juan de Fuca / WCVI / Queen Charlotte Strait STATION : V I 01 EVENT NUMBER : 25 LATITUDE : 48 47.80000 N ! (deg min) LONGITUDE : 125 21.78000 W ! (deg min) WATER DEPTH : 88 *INSTRUMENT TYPE : Sea-Bird CTD MODEL : SBE-911plus SERIAL NUMBER : 0506 $REMARKS SOFTWARE VERSION SEASAVE V 7.21D Comments from secondary file: P:\Cruise_Data_Processing\2012-03\Processing\ios\2012-03-0025.cln2 ------------------------------------------------------------------ SOFTWARE VERSION SEASAVE V 7.21D $END *HISTORY $TABLE: PROGRAMS ! Name Vers Date Time Recs In Recs Out ! -------- ------ ---------- -------- --------- --------- SBE_IOS 3.1.1 2012/05/02 17:10:25 8787 8787 CLEAN 5.0.4 2012/05/02 17:14:23 8787 8787 SHIFTDAT 3.4 2012/05/04 10:02:59 8787 8787 SHIFTDAT 3.4 2012/05/04 13:33:54 8787 8787 SHIFTDAT 3.4 2012/05/04 13:39:04 8787 8787 DELETE 6.3 2012/05/04 13:44:42 8787 2296 CTDEDIT 4.61 2012/05/07 10:11:01 2296 2140 MERGE 3.4 2012/05/18 16:35:38 2140 2140 CALIB 11.7 2012/05/18 16:42:07 2140 2140 FILTERS 4.3 2012/05/18 17:02:02 2140 2140 BINAVE 4.1.1 2012/05/18 17:03:16 2140 84 REMOVECH 8.1.1 2012/05/18 17:03:57 84 84 CHGUNITS 3.0 2012/05/18 17:05:00 84 84 REORDER 1.3 2012/05/19 15:21:44 ? ? HDREDIT2 2.5.1 2012/05/19 15:23:57 ? ? $END $REMARKS -CLEAN functions: 2012/05/02 17:14:01 20 Interpolation by Record Number, in Pressure Set event to last 4 characters of file name -The following SHIFT parameters were used. Shift Channel: Fluorescence:Wetlabs:ECO-AFL # of Records to Advance (-ve for Delay): At REC# 0 Shift= 12.00 -The following SHIFT parameters were used. Shift Channel: Conductivity:Primary # of Records to Advance (-ve for Delay): At REC# 0 Shift= -0.50 Salinity was recalculated after shift -The following SHIFT parameters were used. Shift Channel: Conductivity:Secondary # of Records to Advance (-ve for Delay): At REC# 0 Shift= -0.70 Salinity was recalculated after shift -The following DELETE parameters were used: Surface Record Removal: Last Press Min Maximum Surface Pressure (relative): 10.00 Surface Swell Pressure Tolerance: 1.00 Pressure filtered over width: 15 Swells deleted. Warning message if pressure difference of 2.00 Drop rates < 0.30m/s (calculated over 11 points) will be deleted. Drop rate applies in the range 10.00 to 76.69 dbars Sample interval (from FILE section of header) = 0.042 seconds. -CTDEDIT 2012/05/07 10:11:01 156 records were deleted in this editing session. 69 changes in channel Salinity:T1:C1 -The following MERGE parameters were used: 2012/05/18 16:35:26 2012/05/18 16:35:27 2012/05/18 16:35: Merge Channel: Scan_Number Merge Scheme Used: Add Secondary to Primary Overlap Scheme Used: Keep Primary Primary Channels to Include: Scan_Number, Pressure, Temperature:Primary, Temperature:Secondary, Conductivity:Primary, Conductivity:Secondary, Fluorescence:Wetlabs:ECO-AFL, Oxygen:Voltage:SBE, pH:SBE, Descent_Rate, Status:Pump, Salinity:T0:C0, Salinity:T1:C1, Flag Secondary Channels to Include: Oxygen:Dissolved:SBE Primary file : P:\Cruise_Data_Processing\2012-03\Processing\ios\2012-03-0025.edt Secondary file: P:\Cruise_Data_Processing\2012-03\Processing\ios\2012-03-0025.cln2 Comments from secondary file: P:\Cruise_Data_Processing\2012-03\Processing\ios\2012-03-0025.cln2 ------------------------------------------------------------------ -CLEAN functions: 2012/05/18 15:57:28 20 Reset #RECS, MIN & MAX values in header. -The following DELETE parameters were used: Surface Record Removal: Last Press Min Maximum Surface Pressure (relative): 10.00 Surface Swell Pressure Tolerance: 1.00 Pressure filtered over width: 15 Swells deleted. Warning message if pressure difference of 2.00 Drop rates < 0.30m/s (calculated over 11 points) will be deleted. Drop rate applies in the range 10.00 to 76.69 dbars Sample interval (from FILE section of header) = 0.042 seconds. -CLEAN functions: 2012/05/18 16:33:58 20 Remove Sea-Bird comments from the header. -CALIB parameters: 2012/05/18 16:42:07 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = P:\Cruise_Data_Processing\2012-03\Processing\doc\2012-03-Recal1.CCF Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 2 Pressure dbars 10 0.1200000E+01 0.1000000E+01 13 Salinity:T1:C1 PSS-78 10 0.4000000E-02 0.1000000E+01 -The following FILTER parameters were used. Median filter was used. Filter width = 11 The following channel(s) were filtered. Fluorescence:Wetlabs:ECO-AFL -The following BINAVE parameters were used: Bin channel = Pressure Averaging interval = 1.00 Minimum bin value = 0.000 Average value was used Interpolated values were NOT used for empty bins Channel 'NUMBER_OF_BIN_RECORDS' was added to file. -REMOVECH 2012/05/18 17:03:57 The following CHANNEL(S) were removed: Scan_Number Temperature:Primary [deg C (ITS90)] Conductivity:Primary [S/m] Conductivity:Secondary [S/m] Oxygen:Voltage:SBE [volts] pH:SBE [pH Units] Descent_Rate [m/s] Status:Pump Salinity:T0:C0 [PSS-78] Flag -CHANGE units: 'Oxygen:Dissolved:SBE [mL/L]' changed from mL/L to umol/kg -HEADER EDITS: 2012/05/19 15:23:57 Applied edit header: P:\Cruise_Data_Processing\2012-03\Processing\doc\2012-03-hdr.txt Channel 1: Pressure [decibar] Units: dbars ==> decibar Format: F11.2 ==> F7.1 Channel 3: Fluorescence:URU:Wetlabs [mg/m^3] Name: Fluorescence:Wetlabs:ECO-AFL ==> Fluorescence:URU:Wetlabs Channel 5: Oxygen:Dissolved:SBE [mL/L] Format: F8.3 ==> F7.2 $END *COMMENTS SBE HEADER Sea-Bird SBE 9 Data File: FileName = C:\Data\2012-03\2012-03-0025.hex Software Version Seasave V 7.21d Temperature SN = 2038 Conductivity SN = 3394 Number of Bytes Per Scan = 40 Number of Voltage Words = 5 Number of Scans Averaged by the Deck Unit = 1 System UpLoad Time = Mar 03 2012 17:13:13 NMEA Latitude = 48 47.80 N NMEA Longitude = 125 21.78 W NMEA UTC (Time) = Mar 03 2012 18:12:11 Store Lat/Lon Data = Append to Every Scan SBE 11plus V 5.1e number of scans to average = 1 pressure baud rate = 9600 NMEA baud rate = 4800 surface PAR voltage added to scan A/D offset = 3 Latitude/Longitude added to scan GPIB address = 1 advance primary conductivity 0.073 seconds advance secondary conductivity 0.073 seconds S> Ricker 2012-03 Station: V i 01 Depth(m): 88 System UTC = Mar 03 2012 17:13:13 # nquan = 15 # nvalues = 8787 # units = specified # name 0 = scan: Scan Count # name 1 = prDM: Pressure, Digiquartz [db] # name 2 = t090C: Temperature [ITS-90, deg C] # name 3 = t190C: Temperature, 2 [ITS-90, deg C] # name 4 = c0S/m: Conductivity [S/m] # name 5 = c1S/m: Conductivity, 2 [S/m] # name 6 = flECO-AFL: Fluorescence, WET Labs ECO-AFL/FL [mg/m^3] # name 7 = sbeox0V: Oxygen raw, SBE 43 [V] # name 8 = ph: pH # name 9 = dz/dtM: Descent Rate [m/s] # name 10 = pumps: Pump Status # name 11 = sal00: Salinity, Practical [PSU] # name 12 = sal11: Salinity, Practical, 2 [PSU] # name 13 = sbeox0ML/L: Oxygen, SBE 43 [ml/l], WS = 2 # name 14 = flag: flag # span 0 = 1, 8787 # span 1 = 0.868, 86.693 # span 2 = 7.2637, 7.9836 # span 3 = 7.2644, 7.9816 # span 4 = 3.132904, 3.377930 # span 5 = 3.133219, 3.378072 # span 6 = 0.2420, 2.1907 # span 7 = 2.0927, 2.7351 # span 8 = 7.458, 8.199 # span 9 = -2.521, 2.045 # span 10 = 0, 1 # span 11 = 30.4344, 32.4025 # span 12 = 30.4371, 32.4058 # span 13 = 5.10869, 7.27876 # span 14 = 0.0000e+00, 0.0000e+00 # interval = seconds: 0.0416667 # start_time = Mar 03 2012 18:12:11 [NMEA time, header] # bad_flag = -9.990e-29 # # # # # 2038 # 13-Apr-11 # 1 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.000 # 4.34121727e-003 # 6.27761521e-004 # 1.93344285e-005 # 1.38951411e-006 # 1000.000 # 1.00000000 # 0.0000 # # # # # # 3394 # 29-Mar-11 # 1 # # 0.0000 # 2000.0000 # 0 # # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.0 # -9.57000000e-008 # # # -9.62629272e+000 # 1.47700223e+000 # -1.98297688e-003 # 2.38475512e-004 # -9.57000000e-008 # 3.2500e-006 # # 0.00000000e+000 # # 1.00000000 # 0.00000 # # # # # # 69698 # 15-Apr-11 # -4.957807e+004 # -1.280011e+000 # 1.485710e-002 # 4.021200e-002 # 0.000000e+000 # 3.037224e+001 # -6.696188e-004 # 3.897170e-006 # 3.287590e-009 # 0.99992459 # -1.37675 # 0.000000e+000 # 1.280810e-002 # -9.210198e+000 # # # # # # 4883 # 31-Mar-11 # 1 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.000 # 4.38024578e-003 # 6.40182173e-004 # 2.13732036e-005 # 1.78729483e-006 # 1000.000 # 1.00000000 # 0.0000 # # # # # # 1763 # 29-Mar-11 # 1 # # 0.0000 # 2000.0000 # 0 # # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.0 # -9.57000000e-008 # # # -4.22277306e+000 # 5.07762678e-001 # -5.42749610e-004 # 5.32046027e-005 # -9.57000000e-008 # 3.2500e-006 # # 0.00000000e+000 # # 1.00000000 # 0.00000 # # # # # # # # # # # # 1119 # 29-Mar-11p # 1 # # # 0.0000 # 0.0000e+000 # 0.0000 # 0.00e+000 # 0.0000 # 0.0 # # # # 4.7070e-001 # -0.4812 # -1.5691e-003 # 7.1741e-005 # -1.3719e-006 # 2.5826e+000 # 1.92630e-004 # -4.64800e-002 # 3.6000e-002 # 1.1300 #

-3.3000e-002

#

5.0000e+003

#

1.4500e+003

# # # # # # # 2215 # Mar 2012 # 6.00000000e+000 # # 0.0256 # # # # # # 0851 # 21-Apr-11 # 4.6180 # 2.5063 # # # # # # # # # # # # # # # # # # # # 0.00000000 # 0.00000000 # # # # datcnv_date = May 02 2012 16:06:45, 7.21d [datcnv_vars = 11] # datcnv_in = P:\Cruise_Data_Processing\2012-03\RAW\CTD\2012-03-0025.hex P:\Crui se_Data_Processing\2012-03\Processing\doc\2012-03-ctd-new.xmlcon # datcnv_skipover = 0 # datcnv_ox_hysteresis_correction = yes # wildedit_date = May 02 2012 16:10:18, 7.21d # wildedit_in = P:\Cruise_Data_Processing\2012-03\Processing\convert\2012-03-002 5.cnv # wildedit_pass1_nstd = 2.0 # wildedit_pass2_nstd = 5.0 # wildedit_pass2_mindelta = 0.000e+000 # wildedit_npoint = 50 # wildedit_vars = prDM t090C t190C c0S/m c1S/m # wildedit_excl_bad_scans = yes # alignctd_date = May 02 2012 16:14:09, 7.21d # alignctd_in = P:\Cruise_Data_Processing\2012-03\Processing\wildedit\2012-03-00 25.cnv # alignctd_adv = sbeox0V 2.000 # celltm_date = May 02 2012 16:15:40, 7.21d # celltm_in = P:\Cruise_Data_Processing\2012-03\Processing\align\2012-03-0025.cn v # celltm_alpha = 0.0200, 0.0200 # celltm_tau = 7.0000, 7.0000 # celltm_temp_sensor_use_for_cond = primary, secondary # Derive_date = May 02 2012 16:25:40, 7.21d [derive_vars = 3] # Derive_in = P:\Cruise_Data_Processing\2012-03\Processing\celltm\2012-03-0025.c nv P:\Cruise_Data_Processing\2012-03\Processing\doc\2012-03-ctd-new.xmlcon # derive_time_window_docdt = seconds: 2 # derive_ox_tau_correction = yes # file_type = ascii END* CTDEDIT was used to remove surface records and records corrupted by shed wakes; salinity was cleaned. Data Processing Notes: ---------------------- Fluorescence data are nominal and unedited, except that some records were removed in editing temperature and salinity. There was no calibration sampling for dissolved oxygen, but the results of cruise 2012-04 were used to derive DO concentration. Recalibration of CTD salinity was based on many 10m bottles and 1 deep bottle from this cruise and from sampling during 2012-04. Both comparisons were limited by great variability, but salinity data are likely good to +/-0.003. The SBE pH sensor malfunctioned throughout the cruise. It was discovered late in processing that the dissolved oxygen concentration had been calibrated incorrectly, so the data were re-derived with the right parameters and put through all the same steps as originally run. Because the temperature and salinity data had already been edited, the corrected dissolved oxygen data were merged with the other channels at a stage after editing. This has no ill effects on any of the data, but the Dissolved Oxygen calibrations shown in the headers have incorrect values for SOC and VOffset; they should be 0.4442 and -0.4822, respectively. For details on the processing see processing report: 2012-03-proc.doc. *CALIBRATION $TABLE: CORRECTED CHANNELS ! Name Units Fmla Pad Coefficients ! ---------------- -------- ---- ------ ------------ Pressure dbars 10 -99 () (1.2 1) Salinity:T1:C1 PSS-78 10 -99 () (0.4E-02 1) $END !--1--- ---2---- ---3--- ---4---- --5--- --6-- -7-- !Pressu Temperat Fluores Salinity Oxygen Oxyge Numb !re ure: cence: :T1:C1 : n: er_o ! Secondar URU: Dissol Disso ~bin ! y Wetlabs ved: lved: _rec ! SBE SBE ords !------ -------- ------- -------- ------ ----- ---- *END OF HEADER 5.1 7.2713 1.471 30.4435 6.86 299.0 15 6.1 7.2765 1.360 30.4539 6.85 298.6 35 6.9 7.2797 1.371 30.4633 6.85 298.6 30 8.0 7.2794 1.396 30.4623 6.85 298.8 21 9.1 7.2816 1.422 30.4669 6.86 298.9 27 10.0 7.2843 1.439 30.4724 6.85 298.8 35 11.0 7.2869 1.418 30.4789 6.85 298.6 31 12.0 7.2943 1.368 30.4944 6.84 298.3 28 13.0 7.3118 1.338 30.5198 6.83 297.9 38 14.1 7.3179 1.350 30.5283 6.82 297.6 34 15.0 7.3204 1.319 30.5352 6.82 297.3 21 16.0 7.3255 1.270 30.5480 6.82 297.3 16 17.0 7.3455 1.172 30.5938 6.81 296.8 16 18.0 7.3883 1.066 30.7231 6.77 295.0 18 19.0 7.4186 0.989 30.8316 6.70 292.2 24 20.0 7.4302 0.975 30.8791 6.65 289.9 31 21.0 7.4402 0.948 30.9149 6.62 288.7 39 22.0 7.4494 0.920 30.9562 6.59 287.5 31 23.0 7.4518 0.898 30.9692 6.59 287.1 26 24.0 7.4557 0.869 30.9976 6.58 286.7 21 25.0 7.4613 0.822 31.0243 6.56 286.0 20 26.0 7.4743 0.799 31.0645 6.54 284.9 19 27.0 7.4785 0.803 31.0758 6.52 284.0 17 28.0 7.4884 0.731 31.0966 6.50 283.1 22 29.0 7.4972 0.715 31.1186 6.46 281.7 52 30.0 7.4978 0.713 31.1235 6.45 281.3 34 31.0 7.4979 0.708 31.1261 6.45 281.2 25 32.0 7.5004 0.715 31.1305 6.44 280.8 29 33.0 7.5039 0.707 31.1376 6.43 280.2 28 34.0 7.5073 0.695 31.1441 6.42 279.7 21 35.0 7.5089 0.695 31.1745 6.39 278.4 22 36.0 7.5265 0.655 31.2271 6.34 276.2 23 37.0 7.5349 0.645 31.2643 6.29 274.0 27 38.0 7.5758 0.613 31.3123 6.22 271.2 26 39.0 7.6134 0.585 31.3746 6.14 267.8 23 40.0 7.6447 0.561 31.4300 6.06 264.1 31 41.0 7.6475 0.564 31.4490 6.02 262.1 31 42.0 7.6754 0.527 31.5289 5.94 258.9 25 43.0 7.7429 0.492 31.6131 5.83 254.0 24 44.0 7.7691 0.487 31.6396 5.76 251.0 40 44.9 7.7879 0.481 31.6639 5.70 248.6 29 46.0 7.7928 0.471 31.6899 5.60 244.0 16 47.0 7.7104 0.473 31.7107 5.52 240.5 14 48.0 7.5653 0.468 31.7401 5.45 237.6 14 49.0 7.5310 0.481 31.7556 5.39 234.6 18 50.1 7.5439 0.472 31.8007 5.32 231.5 39 50.9 7.5470 0.460 31.8353 5.26 229.0 33 52.0 7.5510 0.448 31.8487 5.24 228.2 22 53.0 7.5571 0.466 31.8678 5.22 227.5 28 54.0 7.5635 0.458 31.8888 5.19 226.2 31 55.0 7.5715 0.435 31.9074 5.16 225.0 22 56.0 7.5809 0.426 31.9214 5.14 224.0 19 57.0 7.5960 0.418 31.9627 5.11 222.5 16 58.0 7.5996 0.426 31.9816 5.08 221.3 21 59.0 7.6159 0.410 32.0177 5.05 219.7 27 59.9 7.6338 0.393 32.0463 5.01 218.3 34 61.0 7.6364 0.401 32.0596 5.00 217.7 27 62.0 7.6523 0.403 32.0862 4.98 216.8 22 63.0 7.6635 0.410 32.1043 4.96 215.9 25 64.0 7.6665 0.386 32.1153 4.94 215.2 28 65.0 7.6695 0.369 32.1256 4.92 214.4 26 66.0 7.6777 0.357 32.1456 4.91 213.6 22 67.0 7.7101 0.361 32.1853 4.89 212.9 23 68.0 7.7391 0.358 32.2227 4.87 211.9 30 69.0 7.7305 0.354 32.2357 4.85 211.2 35 70.0 7.7688 0.329 32.2487 4.86 211.6 21 71.0 7.7666 0.352 32.2617 4.86 211.8 19 72.0 7.7877 0.352 32.3115 4.88 212.5 17 73.0 7.8542 0.321 32.3472 4.91 214.0 13 74.0 7.9499 0.331 32.3694 4.95 215.8 22 75.1 7.9565 0.334 32.3711 4.98 216.7 25 75.9 7.9516 0.334 32.3716 4.97 216.5 20 76.9 7.9578 0.318 32.3755 4.97 216.5 28 78.0 7.9764 0.335 32.3803 4.98 216.8 13 79.0 7.9808 0.313 32.3840 4.98 216.8 16 80.0 7.9786 0.326 32.3850 4.98 216.8 15 81.0 7.9769 0.321 32.3837 4.97 216.5 19 82.1 7.9618 0.333 32.3881 4.94 215.3 37 82.9 7.9288 0.321 32.3861 4.90 213.4 41 84.0 7.9005 0.320 32.3825 4.87 211.9 20 85.0 7.8810 0.326 32.3832 4.84 210.9 24 86.0 7.8812 0.315 32.3917 4.84 210.8 27 87.0 7.9033 0.328 32.4002 4.85 211.3 27 87.5 7.9243 0.315 32.4061 4.88 212.4 11