*2012/05/19 15:23:57.43 *IOS HEADER VERSION 1.10 2011/10/26 2011/10/26 *FILE START TIME : UTC 2012/03/03 00:34:00.000 TIME INCREMENT : 0 0 0 0.416667E-01 0 ! (day hr min sec ms) NUMBER OF RECORDS : 87 DATA DESCRIPTION : CTD FILE TYPE : ASCII CRC : 63970D8F NUMBER OF CHANNELS : 7 $TABLE: CHANNELS ! No Name Units Minimum Maximum !--- -------------------------- --------------- -------------- -------------- 1 Pressure decibar 6 91.78 2 Temperature:Secondary 'deg C (ITS90)' 7.0156 7.7156 3 Fluorescence:URU:Wetlabs mg/m^3 0.33 1.987 4 Salinity:T1:C1 PSS-78 30.9591 33.169 5 Oxygen:Dissolved:SBE mL/L 3.717 6.754 6 Oxygen:Dissolved:SBE umol/kg 161.7507 294.3834 7 Number_of_bin_records n/a 7 47 $END $TABLE: CHANNEL DETAIL ! No Pad Start Width Format Type Decimal_Places !--- ---- ----- ----- ------ ---- -------------- 1 -99 ' ' 7 F ' ' 1 2 -99 ' ' 9 F ' ' 4 3 -99 ' ' 8 F ' ' 3 4 -99 ' ' 9 F ' ' 4 5 -99 ' ' 7 F ' ' 2 6 -99 ' ' 6 F ' ' 1 7 ' ' ' ' 5 I I 0 $END $REMARKS This file converted from Sea-Bird file: P:\Cruise_Data_Processing\2012-03\Pro Comments from secondary file: P:\Cruise_Data_Processing\2012-03\Processing\ios\2012-03-0016.cln2 ------------------------------------------------------------------ This file converted from Sea-Bird file: P:\Cruise_Data_Processing\2012-03\Pro $END *ADMINISTRATION MISSION : 2012-03 AGENCY : PBS, Salmon And Freshwater Ecosystems, Nanaimo, B.C. COUNTRY : Canada PROJECT : High Seas Salmon SCIENTIST : Zubkowski T. PLATFORM : W.E. Ricker *LOCATION GEOGRAPHIC AREA : Juan de Fuca / WCVI / Queen Charlotte Strait STATION : JF 06 EVENT NUMBER : 16 LATITUDE : 48 33.30000 N ! (deg min) LONGITUDE : 124 42.31000 W ! (deg min) WATER DEPTH : 101 *INSTRUMENT TYPE : Sea-Bird CTD MODEL : SBE-911plus SERIAL NUMBER : 0506 $REMARKS SOFTWARE VERSION SEASAVE V 7.21D Comments from secondary file: P:\Cruise_Data_Processing\2012-03\Processing\ios\2012-03-0016.cln2 ------------------------------------------------------------------ SOFTWARE VERSION SEASAVE V 7.21D $END *HISTORY $TABLE: PROGRAMS ! Name Vers Date Time Recs In Recs Out ! -------- ------ ---------- -------- --------- --------- SBE_IOS 3.1.1 2012/05/02 17:10:18 7496 7496 CLEAN 5.0.4 2012/05/02 17:14:15 7496 7496 SHIFTDAT 3.4 2012/05/04 10:02:51 7496 7496 SHIFTDAT 3.4 2012/05/04 13:33:46 7496 7496 SHIFTDAT 3.4 2012/05/04 13:38:57 7496 7496 DELETE 6.3 2012/05/04 13:44:36 7496 2578 CTDEDIT 4.61 2012/05/07 09:41:32 2578 2328 MERGE 3.4 2012/05/18 16:35:33 2328 2328 CALIB 11.7 2012/05/18 16:42:05 2328 2328 FILTERS 4.3 2012/05/18 17:02:00 2328 2328 BINAVE 4.1.1 2012/05/18 17:03:14 2328 87 REMOVECH 8.1.1 2012/05/18 17:03:57 87 87 CHGUNITS 3.0 2012/05/18 17:04:59 87 87 REORDER 1.3 2012/05/19 15:21:44 ? ? HDREDIT2 2.5.1 2012/05/19 15:23:57 ? ? $END $REMARKS -CLEAN functions: 2012/05/02 17:14:01 20 Interpolation by Record Number, in Pressure Set event to last 4 characters of file name -The following SHIFT parameters were used. Shift Channel: Fluorescence:Wetlabs:ECO-AFL # of Records to Advance (-ve for Delay): At REC# 0 Shift= 12.00 -The following SHIFT parameters were used. Shift Channel: Conductivity:Primary # of Records to Advance (-ve for Delay): At REC# 0 Shift= -0.50 Salinity was recalculated after shift -The following SHIFT parameters were used. Shift Channel: Conductivity:Secondary # of Records to Advance (-ve for Delay): At REC# 0 Shift= -0.70 Salinity was recalculated after shift -The following DELETE parameters were used: Surface Record Removal: Last Press Min Maximum Surface Pressure (relative): 10.00 Surface Swell Pressure Tolerance: 1.00 Pressure filtered over width: 15 Swells deleted. Warning message if pressure difference of 2.00 Drop rates < 0.30m/s (calculated over 11 points) will be deleted. Drop rate applies in the range 10.00 to 81.18 dbars Sample interval (from FILE section of header) = 0.042 seconds. -CTDEDIT 2012/05/07 09:41:32 250 records were deleted in this editing session. 19 changes in channel Salinity:T1:C1 -The following MERGE parameters were used: 2012/05/18 16:35:26 2012/05/18 16:35:27 2012/05/18 16:35: Merge Channel: Scan_Number Merge Scheme Used: Add Secondary to Primary Overlap Scheme Used: Keep Primary Primary Channels to Include: Scan_Number, Pressure, Temperature:Primary, Temperature:Secondary, Conductivity:Primary, Conductivity:Secondary, Fluorescence:Wetlabs:ECO-AFL, Oxygen:Voltage:SBE, pH:SBE, Descent_Rate, Status:Pump, Salinity:T0:C0, Salinity:T1:C1, Flag Secondary Channels to Include: Oxygen:Dissolved:SBE Primary file : P:\Cruise_Data_Processing\2012-03\Processing\ios\2012-03-0016.edt Secondary file: P:\Cruise_Data_Processing\2012-03\Processing\ios\2012-03-0016.cln2 Comments from secondary file: P:\Cruise_Data_Processing\2012-03\Processing\ios\2012-03-0016.cln2 ------------------------------------------------------------------ -CLEAN functions: 2012/05/18 15:57:28 20 Reset #RECS, MIN & MAX values in header. -The following DELETE parameters were used: Surface Record Removal: Last Press Min Maximum Surface Pressure (relative): 10.00 Surface Swell Pressure Tolerance: 1.00 Pressure filtered over width: 15 Swells deleted. Warning message if pressure difference of 2.00 Drop rates < 0.30m/s (calculated over 11 points) will be deleted. Drop rate applies in the range 10.00 to 81.18 dbars Sample interval (from FILE section of header) = 0.042 seconds. -CLEAN functions: 2012/05/18 16:33:58 20 Remove Sea-Bird comments from the header. -CALIB parameters: 2012/05/18 16:42:05 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = P:\Cruise_Data_Processing\2012-03\Processing\doc\2012-03-Recal1.CCF Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 2 Pressure dbars 10 0.1200000E+01 0.1000000E+01 13 Salinity:T1:C1 PSS-78 10 0.4000000E-02 0.1000000E+01 -The following FILTER parameters were used. Median filter was used. Filter width = 11 The following channel(s) were filtered. Fluorescence:Wetlabs:ECO-AFL -The following BINAVE parameters were used: Bin channel = Pressure Averaging interval = 1.00 Minimum bin value = 0.000 Average value was used Interpolated values were NOT used for empty bins Channel 'NUMBER_OF_BIN_RECORDS' was added to file. -REMOVECH 2012/05/18 17:03:57 The following CHANNEL(S) were removed: Scan_Number Temperature:Primary [deg C (ITS90)] Conductivity:Primary [S/m] Conductivity:Secondary [S/m] Oxygen:Voltage:SBE [volts] pH:SBE [pH Units] Descent_Rate [m/s] Status:Pump Salinity:T0:C0 [PSS-78] Flag -CHANGE units: 'Oxygen:Dissolved:SBE [mL/L]' changed from mL/L to umol/kg -HEADER EDITS: 2012/05/19 15:23:57 Applied edit header: P:\Cruise_Data_Processing\2012-03\Processing\doc\2012-03-hdr.txt Channel 1: Pressure [decibar] Units: dbars ==> decibar Format: F11.2 ==> F7.1 Channel 3: Fluorescence:URU:Wetlabs [mg/m^3] Name: Fluorescence:Wetlabs:ECO-AFL ==> Fluorescence:URU:Wetlabs Channel 5: Oxygen:Dissolved:SBE [mL/L] Format: F8.3 ==> F7.2 $END *COMMENTS SBE HEADER Sea-Bird SBE 9 Data File: FileName = C:\Data\2012-03\2012-03-0016.hex Software Version Seasave V 7.21d Temperature SN = 2038 Conductivity SN = 3394 Number of Bytes Per Scan = 40 Number of Voltage Words = 5 Number of Scans Averaged by the Deck Unit = 1 System UpLoad Time = Mar 02 2012 23:34:46 NMEA Latitude = 48 33.30 N NMEA Longitude = 124 42.31 W NMEA UTC (Time) = Mar 03 2012 00:34:00 Store Lat/Lon Data = Append to Every Scan SBE 11plus V 5.1e number of scans to average = 1 pressure baud rate = 9600 NMEA baud rate = 4800 surface PAR voltage added to scan A/D offset = 3 Latitude/Longitude added to scan GPIB address = 1 advance primary conductivity 0.073 seconds advance secondary conductivity 0.073 seconds S> Ricker 2012-03 Station: JF 06 Depth(m): 101 System UTC = Mar 02 2012 23:34:46 # nquan = 15 # nvalues = 7496 # units = specified # name 0 = scan: Scan Count # name 1 = prDM: Pressure, Digiquartz [db] # name 2 = t090C: Temperature [ITS-90, deg C] # name 3 = t190C: Temperature, 2 [ITS-90, deg C] # name 4 = c0S/m: Conductivity [S/m] # name 5 = c1S/m: Conductivity, 2 [S/m] # name 6 = flECO-AFL: Fluorescence, WET Labs ECO-AFL/FL [mg/m^3] # name 7 = sbeox0V: Oxygen raw, SBE 43 [V] # name 8 = ph: pH # name 9 = dz/dtM: Descent Rate [m/s] # name 10 = pumps: Pump Status # name 11 = sal00: Salinity, Practical [PSU] # name 12 = sal11: Salinity, Practical, 2 [PSU] # name 13 = sbeox0ML/L: Oxygen, SBE 43 [ml/l], WS = 2 # name 14 = flag: flag # span 0 = 1, 7496 # span 1 = -0.186, 91.179 # span 2 = 7.0017, 7.7200 # span 3 = 7.0024, 7.7208 # span 4 = 3.157940, 3.424203 # span 5 = 3.158102, 3.424410 # span 6 = 0.2640, 3.0112 # span 7 = 1.7213, 2.7009 # span 8 = 7.396, 8.067 # span 9 = -1.864, 1.459 # span 10 = 0, 1 # span 11 = 30.9418, 33.1661 # span 12 = 30.9437, 33.1672 # span 13 = 3.93118, 7.17911 # span 14 = 0.0000e+00, 0.0000e+00 # interval = seconds: 0.0416667 # start_time = Mar 03 2012 00:34:00 [NMEA time, header] # bad_flag = -9.990e-29 # # # # # 2038 # 13-Apr-11 # 1 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.000 # 4.34121727e-003 # 6.27761521e-004 # 1.93344285e-005 # 1.38951411e-006 # 1000.000 # 1.00000000 # 0.0000 # # # # # # 3394 # 29-Mar-11 # 1 # # 0.0000 # 2000.0000 # 0 # # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.0 # -9.57000000e-008 # # # -9.62629272e+000 # 1.47700223e+000 # -1.98297688e-003 # 2.38475512e-004 # -9.57000000e-008 # 3.2500e-006 # # 0.00000000e+000 # # 1.00000000 # 0.00000 # # # # # # 69698 # 15-Apr-11 # -4.957807e+004 # -1.280011e+000 # 1.485710e-002 # 4.021200e-002 # 0.000000e+000 # 3.037224e+001 # -6.696188e-004 # 3.897170e-006 # 3.287590e-009 # 0.99992459 # -1.37675 # 0.000000e+000 # 1.280810e-002 # -9.210198e+000 # # # # # # 4883 # 31-Mar-11 # 1 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.000 # 4.38024578e-003 # 6.40182173e-004 # 2.13732036e-005 # 1.78729483e-006 # 1000.000 # 1.00000000 # 0.0000 # # # # # # 1763 # 29-Mar-11 # 1 # # 0.0000 # 2000.0000 # 0 # # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.0 # -9.57000000e-008 # # # -4.22277306e+000 # 5.07762678e-001 # -5.42749610e-004 # 5.32046027e-005 # -9.57000000e-008 # 3.2500e-006 # # 0.00000000e+000 # # 1.00000000 # 0.00000 # # # # # # # # # # # # 1119 # 29-Mar-11p # 1 # # # 0.0000 # 0.0000e+000 # 0.0000 # 0.00e+000 # 0.0000 # 0.0 # # # # 4.7070e-001 # -0.4812 # -1.5691e-003 # 7.1741e-005 # -1.3719e-006 # 2.5826e+000 # 1.92630e-004 # -4.64800e-002 # 3.6000e-002 # 1.1300 #

-3.3000e-002

#

5.0000e+003

#

1.4500e+003

# # # # # # # 2215 # Mar 2012 # 6.00000000e+000 # # 0.0256 # # # # # # 0851 # 21-Apr-11 # 4.6180 # 2.5063 # # # # # # # # # # # # # # # # # # # # 0.00000000 # 0.00000000 # # # # datcnv_date = May 02 2012 16:06:41, 7.21d [datcnv_vars = 11] # datcnv_in = P:\Cruise_Data_Processing\2012-03\RAW\CTD\2012-03-0016.hex P:\Crui se_Data_Processing\2012-03\Processing\doc\2012-03-ctd-new.xmlcon # datcnv_skipover = 0 # datcnv_ox_hysteresis_correction = yes # wildedit_date = May 02 2012 16:10:16, 7.21d # wildedit_in = P:\Cruise_Data_Processing\2012-03\Processing\convert\2012-03-001 6.cnv # wildedit_pass1_nstd = 2.0 # wildedit_pass2_nstd = 5.0 # wildedit_pass2_mindelta = 0.000e+000 # wildedit_npoint = 50 # wildedit_vars = prDM t090C t190C c0S/m c1S/m # wildedit_excl_bad_scans = yes # alignctd_date = May 02 2012 16:14:07, 7.21d # alignctd_in = P:\Cruise_Data_Processing\2012-03\Processing\wildedit\2012-03-00 16.cnv # alignctd_adv = sbeox0V 2.000 # celltm_date = May 02 2012 16:15:38, 7.21d # celltm_in = P:\Cruise_Data_Processing\2012-03\Processing\align\2012-03-0016.cn v # celltm_alpha = 0.0200, 0.0200 # celltm_tau = 7.0000, 7.0000 # celltm_temp_sensor_use_for_cond = primary, secondary # Derive_date = May 02 2012 16:25:38, 7.21d [derive_vars = 3] # Derive_in = P:\Cruise_Data_Processing\2012-03\Processing\celltm\2012-03-0016.c nv P:\Cruise_Data_Processing\2012-03\Processing\doc\2012-03-ctd-new.xmlcon # derive_time_window_docdt = seconds: 2 # derive_ox_tau_correction = yes # file_type = ascii END* CTDEDIT was used to remove surface records and records corrupted by shed wakes; salinity was cleaned. Data Processing Notes: ---------------------- Fluorescence data are nominal and unedited, except that some records were removed in editing temperature and salinity. There was no calibration sampling for dissolved oxygen, but the results of cruise 2012-04 were used to derive DO concentration. Recalibration of CTD salinity was based on many 10m bottles and 1 deep bottle from this cruise and from sampling during 2012-04. Both comparisons were limited by great variability, but salinity data are likely good to +/-0.003. The SBE pH sensor malfunctioned throughout the cruise. It was discovered late in processing that the dissolved oxygen concentration had been calibrated incorrectly, so the data were re-derived with the right parameters and put through all the same steps as originally run. Because the temperature and salinity data had already been edited, the corrected dissolved oxygen data were merged with the other channels at a stage after editing. This has no ill effects on any of the data, but the Dissolved Oxygen calibrations shown in the headers have incorrect values for SOC and VOffset; they should be 0.4442 and -0.4822, respectively. For details on the processing see processing report: 2012-03-proc.doc. *CALIBRATION $TABLE: CORRECTED CHANNELS ! Name Units Fmla Pad Coefficients ! ---------------- -------- ---- ------ ------------ Pressure dbars 10 -99 () (1.2 1) Salinity:T1:C1 PSS-78 10 -99 () (0.4E-02 1) $END !--1--- ---2---- ---3--- ---4---- --5--- --6-- -7-- !Pressu Temperat Fluores Salinity Oxygen Oxyge Numb !re ure: cence: :T1:C1 : n: er_o ! Secondar URU: Dissol Disso ~bin ! y Wetlabs ved: lved: _rec ! SBE SBE ords !------ -------- ------- -------- ------ ----- ---- *END OF HEADER 6.0 7.0156 1.841 30.9591 6.75 294.4 33 7.0 7.0168 1.879 30.9610 6.75 294.3 30 8.0 7.0182 1.987 30.9635 6.74 293.9 24 9.0 7.0190 1.923 30.9648 6.74 294.0 24 10.0 7.0313 1.828 30.9849 6.73 293.4 26 11.0 7.0407 1.797 31.0038 6.70 291.9 32 12.0 7.0603 1.669 31.0604 6.63 289.1 27 13.0 7.0832 1.630 31.1282 6.56 285.8 22 14.0 7.1145 1.595 31.2050 6.50 283.3 21 15.0 7.1290 1.586 31.2297 6.47 282.0 22 16.0 7.1484 1.605 31.2685 6.45 281.2 23 17.0 7.1728 1.576 31.3168 6.43 280.2 24 18.0 7.2129 1.452 31.3975 6.38 277.9 23 19.0 7.2537 1.341 31.4627 6.30 274.3 25 20.0 7.2614 1.297 31.4923 6.23 271.4 28 21.0 7.2578 1.266 31.4972 6.20 270.1 31 22.0 7.2577 1.207 31.4994 6.19 269.8 31 23.0 7.2572 1.200 31.5004 6.19 269.7 26 24.0 7.2569 1.180 31.5006 6.18 269.1 22 25.0 7.2217 1.166 31.5000 6.18 269.2 19 26.0 7.2025 1.146 31.5076 6.18 269.1 19 27.0 7.2146 1.102 31.5259 6.14 267.5 22 28.0 7.2233 1.049 31.5439 6.08 264.9 24 29.0 7.2249 1.002 31.5547 6.03 262.6 28 30.0 7.2272 0.975 31.5581 6.00 261.4 33 31.0 7.2264 0.978 31.5599 5.99 260.8 38 32.0 7.2255 0.950 31.5611 5.98 260.6 32 33.0 7.2253 0.967 31.5616 5.98 260.4 24 34.0 7.2258 0.963 31.5623 5.98 260.4 21 35.0 7.2269 0.976 31.5638 5.97 260.1 21 36.0 7.2291 0.945 31.5670 5.96 259.8 25 37.0 7.2323 0.954 31.5697 5.96 259.6 18 38.0 7.2565 0.941 31.5957 5.94 258.7 25 39.0 7.2574 0.938 31.5962 5.92 258.1 26 40.0 7.2565 0.939 31.5954 5.93 258.3 28 41.0 7.2566 0.912 31.5953 5.93 258.2 40 41.6 7.2539 0.930 31.5933 5.92 258.0 7 43.2 7.2512 0.918 31.5934 5.93 258.1 13 44.0 7.2471 0.897 31.5929 5.92 257.9 18 45.0 7.2585 0.912 31.5956 5.92 257.8 20 46.0 7.2605 0.956 31.5952 5.93 258.2 22 47.0 7.2595 0.962 31.5961 5.93 258.3 27 48.1 7.2748 0.954 31.6061 5.93 258.3 23 49.0 7.2819 0.950 31.6126 5.93 258.4 28 50.0 7.2828 0.906 31.6158 5.92 257.9 22 51.0 7.2934 0.861 31.6398 5.88 256.3 13 52.0 7.2982 0.841 31.6498 5.83 254.1 27 53.0 7.3087 0.804 31.6723 5.78 251.8 39 54.0 7.3084 0.782 31.6814 5.75 250.4 29 55.0 7.3056 0.773 31.6879 5.72 249.2 21 56.0 7.3005 0.743 31.6928 5.69 247.8 19 57.0 7.3062 0.746 31.7075 5.66 246.8 21 58.0 7.3127 0.754 31.7140 5.66 246.8 28 59.0 7.3165 0.747 31.7199 5.67 247.1 47 60.0 7.3244 0.774 31.7270 5.69 247.8 29 61.0 7.3349 0.770 31.7358 5.71 248.7 26 62.0 7.3385 0.793 31.7383 5.72 249.2 22 63.0 7.3421 0.790 31.7409 5.73 249.5 22 64.0 7.3460 0.789 31.7463 5.73 249.7 22 65.0 7.3565 0.811 31.7606 5.74 250.0 25 66.0 7.3650 0.813 31.7721 5.74 249.9 36 67.0 7.3750 0.798 31.7901 5.73 249.4 39 68.0 7.3933 0.791 31.8188 5.72 249.0 30 69.0 7.3992 0.797 31.8305 5.71 248.7 26 70.0 7.4033 0.786 31.8400 5.70 248.1 27 71.0 7.4102 0.781 31.8556 5.68 247.5 27 72.0 7.4220 0.773 31.8812 5.66 246.7 31 73.0 7.4306 0.772 31.9017 5.64 245.8 29 74.0 7.4384 0.756 31.9224 5.60 243.9 24 75.0 7.5002 0.683 32.1110 5.41 235.7 24 76.0 7.5548 0.624 32.2953 5.15 224.3 31 77.0 7.5773 0.587 32.4019 4.93 214.8 43 78.0 7.6115 0.531 32.5498 4.72 205.7 31 79.0 7.6328 0.497 32.6216 4.60 200.3 26 80.0 7.6533 0.465 32.6918 4.51 196.2 23 81.0 7.6709 0.460 32.7625 4.41 192.1 24 82.0 7.6877 0.423 32.8472 4.30 187.3 27 83.0 7.6920 0.411 32.8917 4.22 183.7 32 84.0 7.7010 0.407 32.9272 4.16 180.9 32 85.0 7.7156 0.390 32.9645 4.10 178.3 34 86.0 7.7139 0.395 32.9941 4.05 176.1 37 87.0 7.7065 0.380 33.0016 4.02 175.0 31 88.0 7.6991 0.383 33.0105 3.99 173.5 26 89.0 7.6850 0.350 33.0608 3.92 170.6 25 90.0 7.6729 0.330 33.1278 3.82 166.2 30 91.0 7.6670 0.351 33.1679 3.74 162.8 33 91.8 7.6666 0.343 33.1690 3.72 161.8 27