*2012/05/19 15:23:57.29 *IOS HEADER VERSION 1.10 2011/10/26 2011/10/26 *FILE START TIME : UTC 2012/03/02 18:57:05.000 TIME INCREMENT : 0 0 0 0.416667E-01 0 ! (day hr min sec ms) NUMBER OF RECORDS : 93 DATA DESCRIPTION : CTD FILE TYPE : ASCII CRC : 1031F507 NUMBER OF CHANNELS : 7 $TABLE: CHANNELS ! No Name Units Minimum Maximum !--- -------------------------- --------------- -------------- -------------- 1 Pressure decibar 5.95 97.97 2 Temperature:Secondary 'deg C (ITS90)' 7.1695 7.4544 3 Fluorescence:URU:Wetlabs mg/m^3 0.419 1.029 4 Salinity:T1:C1 PSS-78 31.4422 32.4714 5 Oxygen:Dissolved:SBE mL/L 4.335 5.975 6 Oxygen:Dissolved:SBE umol/kg 188.7386 260.3378 7 Number_of_bin_records n/a 18 40 $END $TABLE: CHANNEL DETAIL ! No Pad Start Width Format Type Decimal_Places !--- ---- ----- ----- ------ ---- -------------- 1 -99 ' ' 7 F ' ' 1 2 -99 ' ' 9 F ' ' 4 3 -99 ' ' 8 F ' ' 3 4 -99 ' ' 9 F ' ' 4 5 -99 ' ' 7 F ' ' 2 6 -99 ' ' 6 F ' ' 1 7 ' ' ' ' 5 I I 0 $END $REMARKS This file converted from Sea-Bird file: P:\Cruise_Data_Processing\2012-03\Pro Comments from secondary file: P:\Cruise_Data_Processing\2012-03\Processing\ios\2012-03-0007.cln2 ------------------------------------------------------------------ This file converted from Sea-Bird file: P:\Cruise_Data_Processing\2012-03\Pro $END *ADMINISTRATION MISSION : 2012-03 AGENCY : PBS, Salmon And Freshwater Ecosystems, Nanaimo, B.C. COUNTRY : Canada PROJECT : High Seas Salmon SCIENTIST : Zubkowski T. PLATFORM : W.E. Ricker *LOCATION GEOGRAPHIC AREA : Juan de Fuca / WCVI / Queen Charlotte Strait STATION : JF 03 EVENT NUMBER : 7 LATITUDE : 48 23.05000 N ! (deg min) LONGITUDE : 124 2.91000 W ! (deg min) WATER DEPTH : 102 *INSTRUMENT TYPE : Sea-Bird CTD MODEL : SBE-911plus SERIAL NUMBER : 0506 $REMARKS SOFTWARE VERSION SEASAVE V 7.21D Comments from secondary file: P:\Cruise_Data_Processing\2012-03\Processing\ios\2012-03-0007.cln2 ------------------------------------------------------------------ SOFTWARE VERSION SEASAVE V 7.21D $END *HISTORY $TABLE: PROGRAMS ! Name Vers Date Time Recs In Recs Out ! -------- ------ ---------- -------- --------- --------- SBE_IOS 3.1.1 2012/05/02 17:10:11 6064 6064 CLEAN 5.0.4 2012/05/02 17:14:07 6064 6064 SHIFTDAT 3.4 2012/05/04 10:02:44 6064 6064 SHIFTDAT 3.4 2012/05/04 13:33:39 6064 6064 SHIFTDAT 3.4 2012/05/04 13:38:49 6064 6064 DELETE 6.3 2012/05/04 13:44:30 6064 2476 CTDEDIT 4.61 2012/05/07 09:05:23 2476 2407 MERGE 3.4 2012/05/18 16:35:27 2407 2407 CALIB 11.7 2012/05/18 16:42:02 2407 2407 FILTERS 4.3 2012/05/18 17:01:57 2407 2407 BINAVE 4.1.1 2012/05/18 17:03:13 2407 93 REMOVECH 8.1.1 2012/05/18 17:03:56 93 93 CHGUNITS 3.0 2012/05/18 17:04:59 93 93 REORDER 1.3 2012/05/19 15:21:44 ? ? HDREDIT2 2.5.1 2012/05/19 15:23:57 ? ? $END $REMARKS -CLEAN functions: 2012/05/02 17:14:01 20 Interpolation by Record Number, in Pressure Set event to last 4 characters of file name -The following SHIFT parameters were used. Shift Channel: Fluorescence:Wetlabs:ECO-AFL # of Records to Advance (-ve for Delay): At REC# 0 Shift= 12.00 -The following SHIFT parameters were used. Shift Channel: Conductivity:Primary # of Records to Advance (-ve for Delay): At REC# 0 Shift= -0.50 Salinity was recalculated after shift -The following SHIFT parameters were used. Shift Channel: Conductivity:Secondary # of Records to Advance (-ve for Delay): At REC# 0 Shift= -0.70 Salinity was recalculated after shift -The following DELETE parameters were used: Surface Record Removal: Last Press Min Maximum Surface Pressure (relative): 10.00 Surface Swell Pressure Tolerance: 1.00 Pressure filtered over width: 15 Swells deleted. Warning message if pressure difference of 2.00 Drop rates < 0.30m/s (calculated over 11 points) will be deleted. Drop rate applies in the range 10.00 to 87.78 dbars Sample interval (from FILE section of header) = 0.042 seconds. -CTDEDIT 2012/05/07 09:05:23 69 records were deleted in this editing session. 174 changes in channel Salinity:T1:C1 -The following MERGE parameters were used: 2012/05/18 16:35:26 2012/05/18 16:35:27 Merge Channel: Scan_Number Merge Scheme Used: Add Secondary to Primary Overlap Scheme Used: Keep Primary Primary Channels to Include: Scan_Number, Pressure, Temperature:Primary, Temperature:Secondary, Conductivity:Primary, Conductivity:Secondary, Fluorescence:Wetlabs:ECO-AFL, Oxygen:Voltage:SBE, pH:SBE, Descent_Rate, Status:Pump, Salinity:T0:C0, Salinity:T1:C1, Flag Secondary Channels to Include: Oxygen:Dissolved:SBE Primary file : P:\Cruise_Data_Processing\2012-03\Processing\ios\2012-03-0007.edt Secondary file: P:\Cruise_Data_Processing\2012-03\Processing\ios\2012-03-0007.cln2 Comments from secondary file: P:\Cruise_Data_Processing\2012-03\Processing\ios\2012-03-0007.cln2 ------------------------------------------------------------------ -CLEAN functions: 2012/05/18 15:57:28 20 Reset #RECS, MIN & MAX values in header. -The following DELETE parameters were used: Surface Record Removal: Last Press Min Maximum Surface Pressure (relative): 10.00 Surface Swell Pressure Tolerance: 1.00 Pressure filtered over width: 15 Swells deleted. Warning message if pressure difference of 2.00 Drop rates < 0.30m/s (calculated over 11 points) will be deleted. Drop rate applies in the range 10.00 to 87.78 dbars Sample interval (from FILE section of header) = 0.042 seconds. -CLEAN functions: 2012/05/18 16:33:58 20 Remove Sea-Bird comments from the header. -CALIB parameters: 2012/05/18 16:42:02 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = P:\Cruise_Data_Processing\2012-03\Processing\doc\2012-03-Recal1.CCF Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 2 Pressure dbars 10 0.1200000E+01 0.1000000E+01 13 Salinity:T1:C1 PSS-78 10 0.4000000E-02 0.1000000E+01 -The following FILTER parameters were used. Median filter was used. Filter width = 11 The following channel(s) were filtered. Fluorescence:Wetlabs:ECO-AFL -The following BINAVE parameters were used: Bin channel = Pressure Averaging interval = 1.00 Minimum bin value = 0.000 Average value was used Interpolated values were NOT used for empty bins Channel 'NUMBER_OF_BIN_RECORDS' was added to file. -REMOVECH 2012/05/18 17:03:56 The following CHANNEL(S) were removed: Scan_Number Temperature:Primary [deg C (ITS90)] Conductivity:Primary [S/m] Conductivity:Secondary [S/m] Oxygen:Voltage:SBE [volts] pH:SBE [pH Units] Descent_Rate [m/s] Status:Pump Salinity:T0:C0 [PSS-78] Flag -CHANGE units: 'Oxygen:Dissolved:SBE [mL/L]' changed from mL/L to umol/kg -HEADER EDITS: 2012/05/19 15:23:57 Applied edit header: P:\Cruise_Data_Processing\2012-03\Processing\doc\2012-03-hdr.txt Channel 1: Pressure [decibar] Units: dbars ==> decibar Format: F11.2 ==> F7.1 Channel 3: Fluorescence:URU:Wetlabs [mg/m^3] Name: Fluorescence:Wetlabs:ECO-AFL ==> Fluorescence:URU:Wetlabs Channel 5: Oxygen:Dissolved:SBE [mL/L] Format: F8.3 ==> F7.2 $END *COMMENTS SBE HEADER Sea-Bird SBE 9 Data File: FileName = C:\Data\2012-03\2012-03-0007.hex Software Version Seasave V 7.21d Temperature SN = 2038 Conductivity SN = 3394 Number of Bytes Per Scan = 40 Number of Voltage Words = 5 Number of Scans Averaged by the Deck Unit = 1 System UpLoad Time = Mar 02 2012 17:59:24 NMEA Latitude = 48 23.05 N NMEA Longitude = 124 02.91 W NMEA UTC (Time) = Mar 02 2012 18:57:05 Store Lat/Lon Data = Append to Every Scan SBE 11plus V 5.1e number of scans to average = 1 pressure baud rate = 9600 NMEA baud rate = 4800 surface PAR voltage added to scan A/D offset = 3 Latitude/Longitude added to scan GPIB address = 1 advance primary conductivity 0.073 seconds advance secondary conductivity 0.073 seconds S> Ricker 2012-03 Station: JF 03 Depth(m): 102 System UTC = Mar 02 2012 17:59:24 # nquan = 15 # nvalues = 6064 # units = specified # name 0 = scan: Scan Count # name 1 = prDM: Pressure, Digiquartz [db] # name 2 = t090C: Temperature [ITS-90, deg C] # name 3 = t190C: Temperature, 2 [ITS-90, deg C] # name 4 = c0S/m: Conductivity [S/m] # name 5 = c1S/m: Conductivity, 2 [S/m] # name 6 = flECO-AFL: Fluorescence, WET Labs ECO-AFL/FL [mg/m^3] # name 7 = sbeox0V: Oxygen raw, SBE 43 [V] # name 8 = ph: pH # name 9 = dz/dtM: Descent Rate [m/s] # name 10 = pumps: Pump Status # name 11 = sal00: Salinity, Practical [PSU] # name 12 = sal11: Salinity, Practical, 2 [PSU] # name 13 = sbeox0ML/L: Oxygen, SBE 43 [ml/l], WS = 2 # name 14 = flag: flag # span 0 = 1, 6064 # span 1 = 2.608, 97.781 # span 2 = 7.1656, 7.4555 # span 3 = 7.1681, 7.4552 # span 4 = 3.216619, 3.340752 # span 5 = 3.216793, 3.340778 # span 6 = 0.3446, 1.2896 # span 7 = 1.9058, 2.4555 # span 8 = 6.954, 7.743 # span 9 = -1.649, 2.496 # span 10 = 0, 1 # span 11 = 31.4275, 32.4891 # span 12 = 31.4286, 32.4887 # span 13 = 4.55605, 6.35165 # span 14 = 0.0000e+00, 0.0000e+00 # interval = seconds: 0.0416667 # start_time = Mar 02 2012 18:57:05 [NMEA time, header] # bad_flag = -9.990e-29 # # # # # 2038 # 13-Apr-11 # 1 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.000 # 4.34121727e-003 # 6.27761521e-004 # 1.93344285e-005 # 1.38951411e-006 # 1000.000 # 1.00000000 # 0.0000 # # # # # # 3394 # 29-Mar-11 # 1 # # 0.0000 # 2000.0000 # 0 # # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.0 # -9.57000000e-008 # # # -9.62629272e+000 # 1.47700223e+000 # -1.98297688e-003 # 2.38475512e-004 # -9.57000000e-008 # 3.2500e-006 # # 0.00000000e+000 # # 1.00000000 # 0.00000 # # # # # # 69698 # 15-Apr-11 # -4.957807e+004 # -1.280011e+000 # 1.485710e-002 # 4.021200e-002 # 0.000000e+000 # 3.037224e+001 # -6.696188e-004 # 3.897170e-006 # 3.287590e-009 # 0.99992459 # -1.37675 # 0.000000e+000 # 1.280810e-002 # -9.210198e+000 # # # # # # 4883 # 31-Mar-11 # 1 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.000 # 4.38024578e-003 # 6.40182173e-004 # 2.13732036e-005 # 1.78729483e-006 # 1000.000 # 1.00000000 # 0.0000 # # # # # # 1763 # 29-Mar-11 # 1 # # 0.0000 # 2000.0000 # 0 # # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.00000000e+000 # 0.0 # -9.57000000e-008 # # # -4.22277306e+000 # 5.07762678e-001 # -5.42749610e-004 # 5.32046027e-005 # -9.57000000e-008 # 3.2500e-006 # # 0.00000000e+000 # # 1.00000000 # 0.00000 # # # # # # # # # # # # 1119 # 29-Mar-11p # 1 # # # 0.0000 # 0.0000e+000 # 0.0000 # 0.00e+000 # 0.0000 # 0.0 # # # # 4.7070e-001 # -0.4812 # -1.5691e-003 # 7.1741e-005 # -1.3719e-006 # 2.5826e+000 # 1.92630e-004 # -4.64800e-002 # 3.6000e-002 # 1.1300 #

-3.3000e-002

#

5.0000e+003

#

1.4500e+003

# # # # # # # 2215 # Mar 2012 # 6.00000000e+000 # # 0.0256 # # # # # # 0851 # 21-Apr-11 # 4.6180 # 2.5063 # # # # # # # # # # # # # # # # # # # # 0.00000000 # 0.00000000 # # # # datcnv_date = May 02 2012 16:06:37, 7.21d [datcnv_vars = 11] # datcnv_in = P:\Cruise_Data_Processing\2012-03\RAW\CTD\2012-03-0007.hex P:\Crui se_Data_Processing\2012-03\Processing\doc\2012-03-ctd-new.xmlcon # datcnv_skipover = 0 # datcnv_ox_hysteresis_correction = yes # wildedit_date = May 02 2012 16:10:14, 7.21d # wildedit_in = P:\Cruise_Data_Processing\2012-03\Processing\convert\2012-03-000 7.cnv # wildedit_pass1_nstd = 2.0 # wildedit_pass2_nstd = 5.0 # wildedit_pass2_mindelta = 0.000e+000 # wildedit_npoint = 50 # wildedit_vars = prDM t090C t190C c0S/m c1S/m # wildedit_excl_bad_scans = yes # alignctd_date = May 02 2012 16:14:05, 7.21d # alignctd_in = P:\Cruise_Data_Processing\2012-03\Processing\wildedit\2012-03-00 07.cnv # alignctd_adv = sbeox0V 2.000 # celltm_date = May 02 2012 16:15:36, 7.21d # celltm_in = P:\Cruise_Data_Processing\2012-03\Processing\align\2012-03-0007.cn v # celltm_alpha = 0.0200, 0.0200 # celltm_tau = 7.0000, 7.0000 # celltm_temp_sensor_use_for_cond = primary, secondary # Derive_date = May 02 2012 16:25:36, 7.21d [derive_vars = 3] # Derive_in = P:\Cruise_Data_Processing\2012-03\Processing\celltm\2012-03-0007.c nv P:\Cruise_Data_Processing\2012-03\Processing\doc\2012-03-ctd-new.xmlcon # derive_time_window_docdt = seconds: 2 # derive_ox_tau_correction = yes # file_type = ascii END* CTDEDIT was used to remove surface records; salinity was cleaned. Data Processing Notes: ---------------------- Fluorescence data are nominal and unedited, except that some records were removed in editing temperature and salinity. There was no calibration sampling for dissolved oxygen, but the results of cruise 2012-04 were used to derive DO concentration. Recalibration of CTD salinity was based on many 10m bottles and 1 deep bottle from this cruise and from sampling during 2012-04. Both comparisons were limited by great variability, but salinity data are likely good to +/-0.003. The SBE pH sensor malfunctioned throughout the cruise. It was discovered late in processing that the dissolved oxygen concentration had been calibrated incorrectly, so the data were re-derived with the right parameters and put through all the same steps as originally run. Because the temperature and salinity data had already been edited, the corrected dissolved oxygen data were merged with the other channels at a stage after editing. This has no ill effects on any of the data, but the Dissolved Oxygen calibrations shown in the headers have incorrect values for SOC and VOffset; they should be 0.4442 and -0.4822, respectively. For details on the processing see processing report: 2012-03-proc.doc. *CALIBRATION $TABLE: CORRECTED CHANNELS ! Name Units Fmla Pad Coefficients ! ---------------- -------- ---- ------ ------------ Pressure dbars 10 -99 () (1.2 1) Salinity:T1:C1 PSS-78 10 -99 () (0.4E-02 1) $END !--1--- ---2---- ---3--- ---4---- --5--- --6-- -7-- !Pressu Temperat Fluores Salinity Oxygen Oxyge Numb !re ure: cence: :T1:C1 : n: er_o ! Secondar URU: Dissol Disso ~bin ! y Wetlabs ved: lved: _rec ! SBE SBE ords !------ -------- ------- -------- ------ ----- ---- *END OF HEADER 5.9 7.1717 0.996 31.4422 5.97 260.1 40 7.0 7.1722 1.018 31.4448 5.97 260.0 28 8.0 7.1714 1.029 31.4426 5.97 260.2 25 9.0 7.1708 1.014 31.4424 5.97 260.3 26 10.0 7.1710 0.998 31.4435 5.97 260.3 25 11.0 7.1733 1.015 31.4470 5.97 260.1 18 12.0 7.1765 0.988 31.4584 5.96 259.9 25 13.0 7.1764 1.010 31.4696 5.96 259.6 27 14.0 7.1738 0.985 31.4682 5.95 259.3 28 15.0 7.1714 0.942 31.4783 5.94 259.0 22 16.0 7.1734 0.973 31.4756 5.95 259.2 20 17.0 7.1739 0.966 31.4726 5.95 259.3 20 18.0 7.1752 1.007 31.4698 5.95 259.5 21 19.0 7.1750 1.013 31.4657 5.95 259.4 27 20.0 7.1733 0.977 31.4733 5.94 258.7 26 21.0 7.1695 0.919 31.4858 5.93 258.2 31 22.0 7.1699 0.913 31.4860 5.93 258.4 27 23.0 7.1704 0.897 31.4861 5.93 258.2 26 24.0 7.1697 0.916 31.4860 5.93 258.3 28 25.0 7.1715 0.825 31.4935 5.92 257.8 21 26.0 7.1941 0.781 31.5144 5.84 254.5 23 27.0 7.2444 0.699 31.5514 5.72 249.3 22 28.0 7.2535 0.670 31.5726 5.66 246.4 21 29.0 7.2466 0.705 31.5775 5.65 246.1 25 30.0 7.2359 0.751 31.5808 5.67 246.9 38 31.0 7.2324 0.717 31.5855 5.68 247.4 34 32.0 7.2321 0.701 31.5861 5.68 247.3 23 33.0 7.2308 0.687 31.5888 5.67 247.2 20 34.0 7.2303 0.709 31.5900 5.68 247.5 23 35.0 7.2296 0.736 31.5944 5.68 247.5 24 36.0 7.2287 0.742 31.5991 5.68 247.4 28 37.0 7.2283 0.726 31.5998 5.68 247.5 24 38.0 7.2286 0.713 31.6075 5.68 247.5 24 39.0 7.2319 0.714 31.6154 5.67 247.0 22 40.0 7.2383 0.724 31.6258 5.65 246.3 26 41.0 7.2424 0.725 31.6286 5.64 245.6 28 42.0 7.2430 0.709 31.6295 5.63 245.4 27 43.0 7.2416 0.711 31.6263 5.63 245.4 26 44.0 7.2422 0.720 31.6257 5.64 245.5 27 45.0 7.2424 0.700 31.6262 5.63 245.4 25 46.0 7.2431 0.686 31.6277 5.63 245.1 21 47.0 7.2442 0.706 31.6284 5.62 244.8 23 48.0 7.2448 0.718 31.6290 5.62 244.8 26 49.0 7.2479 0.709 31.6358 5.61 244.4 24 50.0 7.2488 0.727 31.6376 5.60 244.0 27 51.0 7.2503 0.696 31.6409 5.60 244.0 24 52.0 7.2530 0.718 31.6466 5.59 243.7 28 53.0 7.2537 0.709 31.6479 5.59 243.7 28 54.0 7.2540 0.706 31.6482 5.59 243.3 24 55.0 7.2541 0.694 31.6485 5.59 243.4 24 56.0 7.2549 0.713 31.6495 5.59 243.4 25 57.0 7.2549 0.717 31.6494 5.58 243.1 27 58.0 7.2578 0.688 31.6552 5.57 242.9 28 59.0 7.2627 0.689 31.6650 5.57 242.5 24 60.0 7.2670 0.671 31.6737 5.55 242.0 21 61.0 7.2720 0.659 31.6832 5.53 241.0 21 62.0 7.2836 0.641 31.7036 5.50 239.7 24 63.0 7.2921 0.663 31.7172 5.47 238.3 31 64.0 7.3022 0.635 31.7378 5.44 236.8 32 65.0 7.3087 0.605 31.7535 5.41 235.5 25 66.0 7.3134 0.595 31.7692 5.38 234.1 24 67.0 7.3329 0.581 31.8106 5.32 231.8 23 68.0 7.3389 0.566 31.8207 5.28 230.1 25 69.0 7.3558 0.546 31.8361 5.24 228.4 25 70.0 7.3641 0.518 31.8425 5.22 227.2 24 71.0 7.3647 0.525 31.8445 5.21 226.9 25 72.0 7.3707 0.548 31.8501 5.19 226.1 31 73.0 7.3769 0.543 31.8554 5.18 225.4 34 74.0 7.3827 0.540 31.8635 5.15 224.5 35 75.0 7.3939 0.488 31.8843 5.11 222.8 29 76.0 7.3983 0.475 31.8919 5.09 221.5 24 77.0 7.4012 0.487 31.8989 5.07 220.8 26 78.0 7.4044 0.476 31.9067 5.05 220.2 25 79.0 7.4110 0.480 31.9208 5.03 218.9 24 80.0 7.4175 0.455 31.9392 4.99 217.1 25 81.0 7.4278 0.451 31.9815 4.93 214.7 26 82.0 7.4317 0.436 31.9970 4.88 212.7 29 83.0 7.4372 0.434 32.0522 4.82 209.8 25 84.0 7.4442 0.423 32.1133 4.75 206.7 27 85.0 7.4479 0.432 32.1355 4.70 204.8 26 86.0 7.4494 0.432 32.1447 4.69 204.1 24 87.0 7.4523 0.419 32.1622 4.67 203.5 22 88.0 7.4544 0.440 32.1837 4.65 202.5 22 89.0 7.4526 0.450 32.2238 4.61 200.9 24 90.0 7.4516 0.447 32.2417 4.59 199.7 28 91.0 7.4509 0.447 32.2637 4.55 198.3 28 92.0 7.4473 0.430 32.3219 4.51 196.5 25 93.0 7.4465 0.419 32.3282 4.48 195.2 26 94.0 7.4427 0.450 32.3375 4.47 194.5 25 95.0 7.4361 0.441 32.3707 4.44 193.5 27 96.0 7.4316 0.441 32.3869 4.43 192.8 23 97.0 7.4302 0.438 32.3983 4.39 191.4 22 98.0 7.4268 0.441 32.4714 4.34 188.7 19