*2018/05/31 15:50:11.07 *IOS HEADER VERSION 2.0 2016/04/28 2016/06/13 IVF16 *FILE START TIME : UTC 2011/08/07 15:17:23.000 TIME INCREMENT : 0 0 0 1 0 ! (day hr min sec ms) NUMBER OF RECORDS : 24 DATA DESCRIPTION : Bottle:Rosette:Up:Stop + CTD:Up FILE TYPE : ASCII CRC : 2D322404 NUMBER OF CHANNELS : 27 $TABLE: CHANNELS ! No Name Units Minimum Maximum !--- --------------------------------- --------------- -------------- -------------- 1 Sample_Number n/a 21 44 2 Bottle_Number n/a 1 24 3 Bottle:Firing_Sequence n/a 1 24 4 Pressure decibar 1.6 312.3 5 Temperature:Primary 'deg C (ITS90)' 8.7262 18.8647 6 Transmissivity %/metre 8.2 58 7 Fluorescence:URU:Wetlabs mg/m^3 0.184 2.29 8 Salinity:T0:C0 PSS-78 13.317 30.9595 9 Oxygen:Dissolved:SBE mL/L 3.14 6.67 10 Oxygen:Dissolved:SBE umol/kg 136.7 295.4 11 Number_of_bin_records n/a 1 11 12 Temperature:Draw 'deg C (ITS90)' 9 18.9 13 Salinity:Bottle PSS-78 10.1162 30.9579 14 Flag:Salinity:Bottle n/a 15 Oxygen:Dissolved mL/L 3.16 6.76 16 Oxygen:Dissolved umol/kg 137.7 299.3 17 Flag:Oxygen:Dissolved n/a 18 Nitrate_plus_Nitrite umol/L 0.1 29.1 19 Flag:Nitrate_plus_Nitrite n/a 20 Silicate umol/L 38.1 58.2 21 Flag:Silicate n/a 22 Phosphate umol/L 0.3 2.58 23 Flag:Phosphate n/a 24 Carbon:Dissolved:Inorganic umol/kg 1168.78 2123.32 25 Flag:Carbon:Dissolved:Inorganic n/a 26 Alkalinity:Total umol/kg 1217.42 2114.43 27 Flag:Alkalinity:Total n/a $END $TABLE: CHANNEL DETAIL ! No Pad Start Width Format Type Decimal_Places !--- ---- ----- ----- ------ ---- -------------- 1 -9 ' ' 5 I I 0 2 -99 ' ' 3 I I 0 3 -99 ' ' 3 I I 0 4 -99 ' ' 7 F ' ' 1 5 -99 ' ' 9 F ' ' 4 6 -99 ' ' 6 F ' ' 1 7 -99 ' ' 8 F ' ' 3 8 -99 ' ' 9 F ' ' 4 9 -99 ' ' 7 F ' ' 2 10 -99 ' ' 6 F ' ' 1 11 ' ' ' ' 5 I I 0 12 -99 ' ' 6 F R4 1 13 -99 ' ' 9 F R4 4 14 0 ' ' 3 NQ C ' ' 15 -99 ' ' 8 F R4 3 16 -99 ' ' 6 F ' ' 1 17 0 ' ' 3 NQ C ' ' 18 -99 ' ' 6 F R4 1 19 0 ' ' 3 NQ C ' ' 20 -99 ' ' 6 F R4 1 21 0 ' ' 3 NQ C ' ' 22 -99 ' ' 7 F R4 2 23 0 ' ' 3 NQ C ' ' 24 -99 ' ' 8 F R4 2 25 0 ' ' 3 NQ C ' ' 26 -99 ' ' 7 F R4 1 27 0 ' ' 3 NQ C ' ' $END $REMARKS Flag channels initialized with zeros. Non-zero values have the following significance: -------------------------------------------------------------------------------------- 1 = Sample for this measurement was drawn from water bottle but not analyzed (not normally used). 2 = Acceptable measurement (not normally used). 3 = Questionable measurement (no problem observed in sampling or analysis, but value is not trusted, nonetheless; includes outlyers). 4 = Bad measurement (known problem with sampling or analysis, but not serious enough to completely discard the value). 5 = Not reported (lost sample; unredeemably bad measurement). 6 = Mean of replicate measurements. 7 = Manual chromatographic peak measurement. 8 = Irregular digital chromatographic peak integration. 9 = Sample not drawn for this measurement from this bottle (not normally used). -------------------------------------------------------------------------------------- $END *ADMINISTRATION MISSION : 2011-60 AGENCY : IOS, Ocean Sciences Division, Sidney, B.C. COUNTRY : Canada PROJECT : Moorings / Fraser River Sampling SCIENTIST : Johannessen S. PLATFORM : Vector *LOCATION GEOGRAPHIC AREA : Strait of Georgia STATION : SOGS EVENT NUMBER : 15 LATITUDE : 49 1.44500 N ! (deg min) LONGITUDE : 123 25.83200 W ! (deg min) WATER DEPTH : 315 ALTIMETER (M) : 2.805 ! custom item $REMARKS Altimeter value is distance from bottom and is calculated as the median of the deepest 2 metres of data. $END *INSTRUMENT TYPE : Sea-Bird CTD MODEL : SBE-911plus SERIAL NUMBER : 0443 $REMARKS SOFTWARE VERSION SEASAVE V 7.21D $END *HISTORY $TABLE: PROGRAMS ! Name Vers Date Time Recs In Recs Out ! ------------------------ ------ ---------- -------- --------- --------- SBE_IOS 3.1 2012/01/13 13:52:35 167 167 CLEAN 5.0.4 2012/01/13 13:52:41 ? ? ADDSAMP 3.5 2012/01/13 13:54:15 167 167 BINAVE 4.1.1 2012/01/13 13:54:19 167 24 MERGE 3.4 2012/01/16 16:01:00 24 24 CLEAN 5.0.4 2012/01/16 16:01:02 24 24 CALIB 11.7 2012/01/16 17:13:34 24 24 SORT 3.5 2012/01/16 17:13:52 24 24 REMOVECH 8.1.1 2012/01/16 17:14:40 24 24 CHGUNITS 3.0 2012/01/16 17:17:33 24 24 CHGUNITS 3.0 2012/01/16 17:17:33 24 24 REORDER 1.3 2012/01/16 17:19:04 ? ? HDREDIT2 2.5.1 2012/01/17 10:18:52 ? ? CHANGE_CTD_CHANNEL_NAMES 1.0 2013/12/16 15:36:54 24 24 CHANGE_FLAGS 2.0 2014/11/20 09:57:55 24 24 SORT 3.6 2016/11/29 13:19:53 24 24 MERGE 3.5 2016/12/14 13:29:32 24 24 SORT 3.6 2018/05/31 11:44:18 24 24 CLEAN 5.2.3 2018/05/31 11:44:38 24 24 CLEAN 5.2.3 2018/05/31 11:44:52 24 24 HDREDIT2 3.1.1 2018/05/31 15:50:11 ? ? $END $REMARKS -CLEAN functions: 2012/01/13 13:52:40 20 Set event to last 4 characters of file name -The following ADDSAMP parameters were used: Sample Number Lookup File: P:\Cruise_Data_Processing\2011-60\Processing\hydro\addsamp.csv Bottle Channel Name: Bottle_Number -The following BINAVE parameters were used: Bin channel = Bottle_Number Averaging interval = 1.00 Minimum bin value = 0.000 Average value was used Interpolated values were NOT used for empty bins Channel 'NUMBER_OF_BIN_RECORDS' was added to file. -The following MERGE parameters were used: 2012/01/16 16:00:59 2012/01/16 16:00:59 2012/01/16 16:00: Merge Channel: Bottle_Number Merge Scheme Used: Add Secondary to Primary Overlap Scheme Used: Keep Primary Primary Channels to Include: ALL Secondary Channels to Include: Event_Number, Salinity:Bottle, Flag:Salinity:Bottle, Chlorophyll:Extracted, Flag:Chlorophyll:Extracted, Phaeo-Pigment:Extracted, Oxygen:Dissolved, Flag:Oxygen:Dissolved, Temperature:Draw, Nitrate_plus_Nitrite, Flag:Nitrate_plus_Nitrite, Silicate, Flag:Silicate, Phosphate, Flag:Phosphate Primary file : P:\Cruise_Data_Processing\2011-60\Processing\hydro\2011-60-0015.samavg Secondary file: P:\Cruise_Data_Processing\2011-60\Processing\hydro\2011-60-0015.mrgcln1s Comments from secondary file: P:\Cruise_Data_Processing\2011-60\Processing\hydro\2011-60-0015.mrgcln1s ------------------------------------------------------------------------ -SORT parameters: 2012/01/16 16:00:43 Sorted in ascending order of channel Bottle_Number -CLEAN functions: 2012/01/16 16:01:01 20 Reset #RECS, MIN & MAX values in header. Remove Sea-Bird comments from the header. -CALIB parameters: 2012/01/16 17:13:34 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = P:\Cruise_Data_Processing\2011-60\Processing\doc\2011-60-recal1.ccf Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 9 Fluorescence:Wetlabs:ECO-AFL mg/m^3 10 0.9200000E-01 0.1000000E+01 -SORT parameters: 2012/01/16 17:13:52 Sorted in ascending order of channel Pressure [dbars] -REMOVECH 2012/01/16 17:14:40 The following CHANNEL(S) were removed: Scan_Number Temperature:Secondary [deg C (ITS90)] Conductivity:Primary [S/m] Conductivity:Secondary [S/m] Oxygen:Voltage:SBE [volts] pH:SBE [pH Units] Altimeter [metres] Status:Pump Descent_Rate [m/s] Salinity:T1:C1 [PSS-78] Flag -CHANGE units: 'Oxygen:Dissolved:SBE [mL/L]' changed from mL/L to umol/kg -CHANGE units: 'Oxygen:Dissolved' changed from mL/L to umol/kg -HEADER EDITS: 2012/01/17 10:18:52 Applied edit header: P:\Cruise_Data_Processing\2011-60\Processing\doc\2011-60-bot-hdr.txt Channel 2: Bottle:Firing_Sequence [n/a] Name: Bottle_Number ==> Bottle:Firing_Sequence Channel 3: Pressure [decibar] Units: dbars ==> decibar Format: F10.3 ==> F7.1 Channel 1: Bottle_Number [n/a] Name: Bottle:Position ==> Bottle_Number Channel 1: Bottle_Number [n/a] Name: Bottle:Position ==> Bottle_Number Channel 8: Oxygen:Dissolved:SBE [mL/L] Format: F8.3 ==> F7.2 Channel 15: Oxygen:Dissolved [mL/L] Units: ==> mL/L Format: F8.3 ==> F7.2 Channel 18: Nitrate_plus_Nitrite [umol/L] Units: ==> umol/L Channel 20: Silicate [umol/L] Units: ==> umol/L Format: F7.2 ==> F6.1 Channel 22: Phosphate [umol/L] Units: ==> umol/L Channel 12: Temperature:Draw [deg C (ITS90)] Format: F9.4 ==> F5.1 Channel 9: Oxygen:Dissolved:SBE [umol/kg] Format: F6.2 ==> F6.1 Channel 16: Oxygen:Dissolved [umol/kg] Format: F6.2 ==> F6.1 Channel 6: Fluorescence:URU:Wetlabs [mg/m^3] Name: Fluorescence:Wetlabs:ECO-AFL ==> Fluorescence:URU:Wetlabs Channel 7: Salinity:Practical:T0:C0 [PSS-78] Name: Salinity:T0:C0 ==> Salinity:Practical:T0:C0 -SORT parameters: 2016/11/29 13:19:53 Sorted in ascending order of channel Sample_Number -The following MERGE parameters were used: 2016/12/14 13:29:32 Merge Channel: Sample_Number Merge Scheme Used: Add Secondary to Primary Overlap Scheme Used: Keep Primary Primary Channels to Include: ALL Secondary Channels to Include: Carbon:Dissolved:Inorganic, Flag:Carbon:Dissolved:Inorganic, Alkalinity:Total, Flag:Alkalinity:Total, pH, Flag:pH Primary file : C:\DATA\Debby\2011-60-0015.chesort Secondary file: C:\DATA\Debby\2011-60-0015.dic -SORT parameters: 2018/05/31 11:44:18 Sorted in ascending order of channel Pressure -CLEAN functions: 2018/05/31 11:44:38 20 Reset #RECS, MIN & MAX values in header. Change character data from "2" to "0" Delete Empty Channels: 2 deleted. -CLEAN functions: 2018/05/31 11:44:52 20 Change character data from " " to "0" -HEADER EDITS: 2018/05/31 15:50:11 Applied edit header: P:\Cruise_Data_Processing\Ianson-carbon\2011-60\Processing\2011-60-hdr.txt Channel 1: Sample_Number [n/a] Pad: -99 ==> -9 Channel 15: Oxygen:Dissolved [mL/L] Format: F7.2 ==> F8.3 Channel 25: Flag:Carbon:Dissolved:Inorganic [n/a] Units: ==> n/a Channel 26: Alkalinity:Total [umol/kg] Format: F8.2 ==> F7.1 Channel 27: Flag:Alkalinity:Total [n/a] Units: ==> n/a Channel 12: Temperature:Draw [deg C (ITS90)] Format: F5.1 ==> F6.1 $END *COMMENTS Comments from secondary file: P:\Cruise_Data_Processing\2011-60\Processing\hydro\2011-60-0015.mrgcln1s ------------------------------------------------------------------------ Comments from secondary file: P:\Cruise_Data_Processing\2011-60\Processing\hydro\2011-60-0015.sal ------------------------------------------------------------------- Sample_Number 44: Sal: Duplicates Chauvenet outliers Comments from secondary file: P:\Cruise_Data_Processing\2011-60\Processing\hydro\2011-60-0015.oxy ------------------------------------------------------------------- Sample_Number 21: OXY: Duplicate value not trusted. Incomplete titration. First replicate reported, not the average Sample_Number 27: OXY: Only 1st duplicate value reported. Positive skew in majority of duplicate samples likely caused by poor sampling. See notes Sample_Number 41: OXY: Titration Incomplete. Datum Unreasonable. Extreme outlier in COMPARE Sample_Number 43: OXY: Only 1st duplicate value reported. Positive skew in majority of duplicate samples likely caused by poor sampling. See notes DO: ALL SAMPLES: The difference between duplicates was larger than usual and skewed, which may indicate problems in sampling protocol. The first samples are believed to be more accurate than the second, so those are reported. All DO samples are reported with only 2 decimal places based on the precision study. For more detail see tabs "notes" and "duplicates" in file QF2011-60oxy*.xls. Analysis methods: ----------------- Oxygen samples were analyzed within a week at IOS using an automated Winkler titration system (Brinkmann Dosimat model 765 and a PC950 Colorimeter controlled by AutoOxy software V3.4) with modifications based on Carpenter (1965) and adhering to WOCE protocols (Culberson 1991). For details including a duplicate analysis, see document QF2011-60oxy*.xls. Salinity samples were collected in glass bottles and analyzed on Guildline Autosal model 8400B, S/N 68572, at IOS. Salinometers are standardized with IAPSO standard seawater. Full results are in file 2011-60-sal*.xls. Nutrient samples were collected in plastic tubes. Samples were stored frozen and later analysed at IOS. An Astoria analyzer was used following methods described in Barwell-Clarke and Whitney (1996). File "QF 2011-60nuts*.xls" includes the raw data and a precision study. References: 1. Barwell-Clarke, J. and Whitney, F. 1996. Institute of Ocean Sciences Nutrient Methods and Analysis. Canadian Technical Report of Hydrography and Ocean Sciences, No. 182, 43 pp. 2. Carpenter, J.H. 1965. The Chesapeake Bay Institute Technique for the Winkler Dissolved Oxygen Method. Limmnol. & Oceanogr., 10: 141-143. 3. Culberson, C.H. 1991. Dissolved oxygen. WOCE Hydrographic Programme Operations and Methods (July 1991). 15pp. 4. Holm-Hansen, O., Lorenzen, C.J., Holmes, R.W., and Strickland J.D.H. 1965. Fluorometric Determination of Chlorophyll. J.du Cons. Intl. Pour l’Epl. De la Mer. 30:3-15. 4. Dickson, A. G., C. L. Sabine, and J. R. Christian (2007), Determination of dissolved organic carbon and total dissolved nitrogen in sea water, PICES Special Publication 3. 5. Ianson, D., Susan E. Allen, Benjamin L. Moore-Maley, Sophia C. Johannessen and Robie W. Macdonald (2016), Vulnerability of a semienclosed estuarine sea to ocean acidification in contrast with hypoxia, Geophys. Res. Lett., 43, 5793-5801, doi:10.1002/2016GL068996. * For PDF versions of these papers see folder \\Cruise_Data\DOCUMENTS\Analysis Reference Papers --------------------------------------------------------------------------------- Data Processing Notes: ---------------------- Transmissivity and SBE Fluorescence data are nominal and unedited. For details on how the transmissivity calibration parameters were calculated see the document in folder "\cruise_data\documents\transmissivity". SBE DO calibration was done using the method described in the SeaBird Application NOte #64-2. For further processing details see the processing report 2011-60-proc.doc. *CALIBRATION $TABLE: CORRECTED CHANNELS !Name Units Fmla Pad Coefficients !------------------------------ -------- ---- ------ ------------ Fluorescence:Wetlabs:ECO-AFL mg/m^3 10 -99 () (0.92E-01 1) $END !-1-- 2- 3- --4--- ---5---- --6-- ---7--- ---8---- --9--- --10- -11- --12- ---13--- 14 ---15-- --16- 17 --18- 19 --20- 21 --22-- 23 ---24-- 25 --26-- 27 !Samp Bo Bo Pressu Temperat Trans Fluores Salinity Oxygen Oxyge Numb Tempe Salinity Fl Oxygen: Oxyge Fl Nitra Fl Silic Fl Phosph Fl Carbon: Fl Alkali Fl !le_ tt tt re ure: missi cence: :T0:C0 : n: er_o ratur :Bottle ag Dissolv n: ag te_ ag ate ag ate ag Dissolv ag nity: ag !Numb ~u ~u Primary vity URU: Dissol Disso ~bin e: ~o ed Disso ~o plus_ ~t ~i ~p ed: ~g Total ~T !er mb en Wetlabs ved: lved: _rec Draw tt lved lv Nitri ri ca ha Inorgan an ot ! er ce SBE SBE ords le ed te te te te ic ic al !---- -- -- ------ -------- ----- ------- -------- ------ ----- ---- ----- -------- -- ------- ----- -- ----- -- ----- -- ------ -- ------- -- ------ -- *END OF HEADER 43 23 23 1.6 18.8647 8.2 2.290 13.9076 6.66 294.7 3 18.6 -99.0000 0 6.760 299.3 0 -99.0 0 -99.0 0 -99.00 0 -99.00 9 -99.0 9 44 24 24 1.6 18.7523 12.4 2.182 13.3170 6.67 295.4 11 -99.0 10.1162 36 -99.000 -99.0 0 0.5 6 56.2 6 0.59 6 1168.78 6 1217.4 6 41 21 21 5.3 18.5956 42.0 2.091 18.5510 6.41 282.8 4 18.9 -99.0000 0 -99.000 -99.0 5 -99.0 0 -99.0 0 -99.00 0 -99.00 9 -99.0 9 42 22 22 5.3 18.7689 42.5 1.868 18.0728 6.41 282.8 11 -99.0 17.7928 0 -99.000 -99.0 0 0.1 0 38.1 0 0.30 0 1853.71 3 1495.4 0 39 19 19 9.8 13.7321 50.7 2.122 25.0084 5.28 231.3 2 13.7 -99.0000 0 5.030 220.4 0 -99.0 0 -99.0 0 -99.00 0 -99.00 9 -99.0 9 40 20 20 9.8 13.7315 50.8 2.096 25.0138 5.27 231.1 11 -99.0 25.5881 0 -99.000 -99.0 0 11.7 0 39.2 0 1.20 0 1764.96 0 1853.7 0 37 17 17 15.3 11.4283 55.7 1.207 27.0053 4.44 194.4 2 12.1 -99.0000 0 4.470 195.7 0 -99.0 0 -99.0 0 -99.00 0 -99.00 9 -99.0 9 38 18 18 15.3 11.3829 55.8 1.078 27.0526 4.43 193.7 11 -99.0 27.0247 0 -99.000 -99.0 0 18.2 0 42.2 0 1.60 0 1642.33 3 1882.3 0 35 15 15 24.6 10.4258 58.0 0.566 27.9981 4.22 184.3 2 10.7 -99.0000 0 4.180 182.8 0 -99.0 0 -99.0 0 -99.00 0 -99.00 9 -99.0 9 36 16 16 24.6 10.4193 57.8 0.561 28.0044 4.22 184.4 11 -99.0 28.1409 0 -99.000 -99.0 0 24.5 0 49.0 0 2.10 0 1926.67 63 1941.7 6 33 13 13 50.1 9.6743 52.2 0.336 29.5198 3.83 167.1 3 10.1 -99.0000 0 3.840 167.5 0 -99.0 0 -99.0 0 -99.00 0 -99.00 9 -99.0 9 34 14 14 50.1 9.6808 52.2 0.314 29.5269 3.82 166.7 11 -99.0 29.5041 0 -99.000 -99.0 0 25.7 0 45.7 0 2.10 0 2007.32 0 2061.7 0 32 12 12 74.5 9.6604 48.8 0.286 29.9085 3.57 155.7 11 -99.0 29.9218 0 -99.000 -99.0 0 25.0 0 44.6 0 2.00 0 2024.54 0 2073.5 0 31 11 11 74.6 9.6605 48.9 0.306 29.9084 3.55 155.1 1 9.9 -99.0000 0 3.560 155.4 0 -99.0 0 -99.0 0 -99.00 0 -99.00 9 -99.0 9 29 9 9 100.5 9.3350 47.3 0.245 30.1927 3.57 155.7 4 9.5 -99.0000 0 3.570 155.6 0 -99.0 0 -99.0 0 -99.00 0 -99.00 9 -99.0 9 30 10 10 100.5 9.3350 47.4 0.248 30.1926 3.57 155.7 11 -99.0 30.1913 0 -99.000 -99.0 0 27.0 0 46.9 0 2.00 0 2042.14 0 2090.4 0 27 7 7 150.4 8.8948 46.4 0.214 30.5352 3.63 158.5 4 9.2 -99.0000 0 3.620 157.8 0 -99.0 0 -99.0 0 -99.00 0 -99.00 9 -99.0 9 28 8 8 150.4 8.8993 45.9 0.214 30.5369 3.63 158.1 11 -99.0 30.5429 0 -99.000 -99.0 0 26.2 0 47.0 0 2.20 0 1560.03 3 2099.1 0 25 5 5 200.4 8.7262 44.2 0.184 30.7504 3.41 148.6 2 9.0 -99.0000 0 3.420 149.1 0 -99.0 0 -99.0 0 -99.00 0 -99.00 9 -99.0 9 26 6 6 200.5 8.7262 44.2 0.209 30.7505 3.41 148.7 11 -99.0 30.7507 0 -99.000 -99.0 0 27.5 0 54.4 0 2.40 0 2091.22 0 2114.4 0 23 3 3 251.0 8.7604 41.4 0.214 30.8557 3.30 143.8 3 9.0 -99.0000 0 3.320 144.6 0 -99.0 0 -99.0 0 -99.00 0 -99.00 9 -99.0 9 24 4 4 251.0 8.7602 41.4 0.214 30.8560 3.29 143.6 11 -99.0 30.8466 0 -99.000 -99.0 0 29.1 0 57.2 0 2.50 0 2123.32 0 2095.1 3 21 1 1 312.1 8.7767 20.3 0.233 30.9595 3.14 136.8 5 9.0 -99.0000 0 3.160 137.7 0 -99.0 0 -99.0 0 -99.00 0 -99.00 9 -99.0 9 22 2 2 312.3 8.7768 19.9 0.225 30.9595 3.14 136.7 11 -99.0 30.9579 6 -99.000 -99.0 0 29.0 6 58.2 6 2.58 6 2026.16 36 2103.4 6