*2018/05/31 15:50:10.88 *IOS HEADER VERSION 2.0 2016/04/28 2016/06/13 IVF16 *FILE START TIME : UTC 2011/08/06 14:34:44.000 TIME INCREMENT : 0 0 0 1 0 ! (day hr min sec ms) NUMBER OF RECORDS : 24 DATA DESCRIPTION : Bottle:Rosette:Up:Stop + CTD:Up FILE TYPE : ASCII CRC : BA732DAA NUMBER OF CHANNELS : 27 $TABLE: CHANNELS ! No Name Units Minimum Maximum !--- --------------------------------- --------------- -------------- -------------- 1 Sample_Number n/a 45 68 2 Bottle_Number n/a 1 24 3 Bottle:Firing_Sequence n/a 1 24 4 Pressure decibar 1.9 329.6 5 Temperature:Primary 'deg C (ITS90)' 8.322 17.0783 6 Transmissivity %/metre 40.1 58.9 7 Fluorescence:URU:Wetlabs mg/m^3 0.184 1.588 8 Salinity:T0:C0 PSS-78 21.889 30.5702 9 Oxygen:Dissolved:SBE mL/L 2.95 6.39 10 Oxygen:Dissolved:SBE umol/kg 128.7 281 11 Number_of_bin_records n/a 1 11 12 Temperature:Draw 'deg C (ITS90)' 8.5 19.9 13 Salinity:Bottle PSS-78 21.891 30.5698 14 Flag:Salinity:Bottle n/a 15 Oxygen:Dissolved mL/L 2.96 6.34 16 Oxygen:Dissolved umol/kg 128.9 278.8 17 Flag:Oxygen:Dissolved n/a 18 Nitrate_plus_Nitrite umol/L 0.6 30.6 19 Flag:Nitrate_plus_Nitrite n/a 20 Silicate umol/L 33.3 83 21 Flag:Silicate n/a 22 Phosphate umol/L 0.28 2.88 23 Flag:Phosphate n/a 24 Carbon:Dissolved:Inorganic umol/kg 1302.67 2109.14 25 Flag:Carbon:Dissolved:Inorganic n/a 26 Alkalinity:Total umol/kg 1654.43 2169.3 27 Flag:Alkalinity:Total n/a $END $TABLE: CHANNEL DETAIL ! No Pad Start Width Format Type Decimal_Places !--- ---- ----- ----- ------ ---- -------------- 1 -9 ' ' 5 I I 0 2 -99 ' ' 3 I I 0 3 -99 ' ' 3 I I 0 4 -99 ' ' 7 F ' ' 1 5 -99 ' ' 9 F ' ' 4 6 -99 ' ' 6 F ' ' 1 7 -99 ' ' 8 F ' ' 3 8 -99 ' ' 9 F ' ' 4 9 -99 ' ' 7 F ' ' 2 10 -99 ' ' 6 F ' ' 1 11 ' ' ' ' 5 I I 0 12 -99 ' ' 6 F R4 1 13 -99 ' ' 9 F R4 4 14 0 ' ' 3 NQ C ' ' 15 -99 ' ' 8 F R4 3 16 -99 ' ' 6 F ' ' 1 17 0 ' ' 3 NQ C ' ' 18 -99 ' ' 6 F R4 1 19 0 ' ' 3 NQ C ' ' 20 -99 ' ' 6 F R4 1 21 0 ' ' 3 NQ C ' ' 22 -99 ' ' 7 F R4 2 23 0 ' ' 3 NQ C ' ' 24 -99 ' ' 8 F R4 2 25 0 ' ' 3 NQ C ' ' 26 -99 ' ' 7 F R4 1 27 0 ' ' 3 NQ C ' ' $END $REMARKS Flag channels initialized with zeros. Non-zero values have the following significance: -------------------------------------------------------------------------------------- 1 = Sample for this measurement was drawn from water bottle but not analyzed (not normally used). 2 = Acceptable measurement (not normally used). 3 = Questionable measurement (no problem observed in sampling or analysis, but value is not trusted, nonetheless; includes outlyers). 4 = Bad measurement (known problem with sampling or analysis, but not serious enough to completely discard the value). 5 = Not reported (lost sample; unredeemably bad measurement). 6 = Mean of replicate measurements. 7 = Manual chromatographic peak measurement. 8 = Irregular digital chromatographic peak integration. 9 = Sample not drawn for this measurement from this bottle (not normally used). -------------------------------------------------------------------------------------- $END *ADMINISTRATION MISSION : 2011-60 AGENCY : IOS, Ocean Sciences Division, Sidney, B.C. COUNTRY : Canada PROJECT : Moorings / Fraser River Sampling SCIENTIST : Johannessen S. PLATFORM : Vector *LOCATION GEOGRAPHIC AREA : Strait of Georgia STATION : SOGN EVENT NUMBER : 13 LATITUDE : 49 50.23000 N ! (deg min) LONGITUDE : 124 52.35000 W ! (deg min) WATER DEPTH : 329 ALTIMETER (M) : 1.845 ! custom item $REMARKS Altimeter value is distance from bottom and is calculated as the median of the deepest 2 metres of data. $END *INSTRUMENT TYPE : Sea-Bird CTD MODEL : SBE-911plus SERIAL NUMBER : 0443 $REMARKS SOFTWARE VERSION SEASAVE V 7.21D $END *HISTORY $TABLE: PROGRAMS ! Name Vers Date Time Recs In Recs Out ! ------------------------ ------ ---------- -------- --------- --------- SBE_IOS 3.1 2012/01/13 13:52:35 153 153 CLEAN 5.0.4 2012/01/13 13:52:41 ? ? ADDSAMP 3.5 2012/01/13 13:54:15 153 153 BINAVE 4.1.1 2012/01/13 13:54:18 153 24 MERGE 3.4 2012/01/16 16:01:00 24 24 CLEAN 5.0.4 2012/01/16 16:01:02 24 24 CALIB 11.7 2012/01/16 17:13:33 24 24 SORT 3.5 2012/01/16 17:13:52 24 24 REMOVECH 8.1.1 2012/01/16 17:14:40 24 24 CHGUNITS 3.0 2012/01/16 17:17:33 24 24 CHGUNITS 3.0 2012/01/16 17:17:33 24 24 REORDER 1.3 2012/01/16 17:19:04 ? ? HDREDIT2 2.5.1 2012/01/17 10:18:52 ? ? CHANGE_CTD_CHANNEL_NAMES 1.0 2013/12/16 15:36:54 24 24 CHANGE_FLAGS 2.0 2014/11/20 09:57:55 24 24 SORT 3.6 2016/11/29 13:19:53 24 24 MERGE 3.5 2016/12/14 13:29:32 24 24 SORT 3.6 2018/05/31 11:44:18 24 24 CLEAN 5.2.3 2018/05/31 11:44:38 24 24 CLEAN 5.2.3 2018/05/31 11:44:52 24 24 HDREDIT2 3.1.1 2018/05/31 15:50:10 ? ? $END $REMARKS -CLEAN functions: 2012/01/13 13:52:40 20 Set event to last 4 characters of file name -The following ADDSAMP parameters were used: Sample Number Lookup File: P:\Cruise_Data_Processing\2011-60\Processing\hydro\addsamp.csv Bottle Channel Name: Bottle_Number -The following BINAVE parameters were used: Bin channel = Bottle_Number Averaging interval = 1.00 Minimum bin value = 0.000 Average value was used Interpolated values were NOT used for empty bins Channel 'NUMBER_OF_BIN_RECORDS' was added to file. -The following MERGE parameters were used: 2012/01/16 16:00:59 2012/01/16 16:00:59 2012/01/16 16:00: Merge Channel: Bottle_Number Merge Scheme Used: Add Secondary to Primary Overlap Scheme Used: Keep Primary Primary Channels to Include: ALL Secondary Channels to Include: Event_Number, Salinity:Bottle, Flag:Salinity:Bottle, Chlorophyll:Extracted, Flag:Chlorophyll:Extracted, Phaeo-Pigment:Extracted, Oxygen:Dissolved, Flag:Oxygen:Dissolved, Temperature:Draw, Nitrate_plus_Nitrite, Flag:Nitrate_plus_Nitrite, Silicate, Flag:Silicate, Phosphate, Flag:Phosphate Primary file : P:\Cruise_Data_Processing\2011-60\Processing\hydro\2011-60-0013.samavg Secondary file: P:\Cruise_Data_Processing\2011-60\Processing\hydro\2011-60-0013.mrgcln1s Comments from secondary file: P:\Cruise_Data_Processing\2011-60\Processing\hydro\2011-60-0013.mrgcln1s ------------------------------------------------------------------------ -SORT parameters: 2012/01/16 16:00:43 Sorted in ascending order of channel Bottle_Number -CLEAN functions: 2012/01/16 16:01:01 20 Reset #RECS, MIN & MAX values in header. Remove Sea-Bird comments from the header. -CALIB parameters: 2012/01/16 17:13:33 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = P:\Cruise_Data_Processing\2011-60\Processing\doc\2011-60-recal1.ccf Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 9 Fluorescence:Wetlabs:ECO-AFL mg/m^3 10 0.9200000E-01 0.1000000E+01 -SORT parameters: 2012/01/16 17:13:52 Sorted in ascending order of channel Pressure [dbars] -REMOVECH 2012/01/16 17:14:40 The following CHANNEL(S) were removed: Scan_Number Temperature:Secondary [deg C (ITS90)] Conductivity:Primary [S/m] Conductivity:Secondary [S/m] Oxygen:Voltage:SBE [volts] pH:SBE [pH Units] Altimeter [metres] Status:Pump Descent_Rate [m/s] Salinity:T1:C1 [PSS-78] Flag -CHANGE units: 'Oxygen:Dissolved:SBE [mL/L]' changed from mL/L to umol/kg -CHANGE units: 'Oxygen:Dissolved' changed from mL/L to umol/kg -HEADER EDITS: 2012/01/17 10:18:52 Applied edit header: P:\Cruise_Data_Processing\2011-60\Processing\doc\2011-60-bot-hdr.txt Channel 2: Bottle:Firing_Sequence [n/a] Name: Bottle_Number ==> Bottle:Firing_Sequence Channel 3: Pressure [decibar] Units: dbars ==> decibar Format: F10.3 ==> F7.1 Channel 1: Bottle_Number [n/a] Name: Bottle:Position ==> Bottle_Number Channel 1: Bottle_Number [n/a] Name: Bottle:Position ==> Bottle_Number Channel 8: Oxygen:Dissolved:SBE [mL/L] Format: F8.3 ==> F7.2 Channel 15: Oxygen:Dissolved [mL/L] Units: ==> mL/L Format: F8.3 ==> F7.2 Channel 18: Nitrate_plus_Nitrite [umol/L] Units: ==> umol/L Channel 20: Silicate [umol/L] Units: ==> umol/L Format: F7.2 ==> F6.1 Channel 22: Phosphate [umol/L] Units: ==> umol/L Channel 12: Temperature:Draw [deg C (ITS90)] Format: F9.4 ==> F5.1 Channel 9: Oxygen:Dissolved:SBE [umol/kg] Format: F6.2 ==> F6.1 Channel 16: Oxygen:Dissolved [umol/kg] Format: F6.2 ==> F6.1 Channel 6: Fluorescence:URU:Wetlabs [mg/m^3] Name: Fluorescence:Wetlabs:ECO-AFL ==> Fluorescence:URU:Wetlabs Channel 7: Salinity:Practical:T0:C0 [PSS-78] Name: Salinity:T0:C0 ==> Salinity:Practical:T0:C0 -SORT parameters: 2016/11/29 13:19:53 Sorted in ascending order of channel Sample_Number -The following MERGE parameters were used: 2016/12/14 13:29:32 Merge Channel: Sample_Number Merge Scheme Used: Add Secondary to Primary Overlap Scheme Used: Keep Primary Primary Channels to Include: ALL Secondary Channels to Include: Carbon:Dissolved:Inorganic, Flag:Carbon:Dissolved:Inorganic, Alkalinity:Total, Flag:Alkalinity:Total, pH, Flag:pH Primary file : C:\DATA\Debby\2011-60-0013.chesort Secondary file: C:\DATA\Debby\2011-60-0013.dic -SORT parameters: 2018/05/31 11:44:18 Sorted in ascending order of channel Pressure -CLEAN functions: 2018/05/31 11:44:38 Reset #RECS, MIN & MAX values in header. Change character data from "2" to "0" Delete Empty Channels: 2 deleted. -CLEAN functions: 2018/05/31 11:44:52 Change character data from " " to "0" -HEADER EDITS: 2018/05/31 15:50:10 Applied edit header: P:\Cruise_Data_Processing\Ianson-carbon\2011-60\Processing\2011-60-hdr.txt Channel 1: Sample_Number [n/a] Pad: -99 ==> -9 Channel 15: Oxygen:Dissolved [mL/L] Format: F7.2 ==> F8.3 Channel 25: Flag:Carbon:Dissolved:Inorganic [n/a] Units: ==> n/a Channel 26: Alkalinity:Total [umol/kg] Format: F8.2 ==> F7.1 Channel 27: Flag:Alkalinity:Total [n/a] Units: ==> n/a Channel 12: Temperature:Draw [deg C (ITS90)] Format: F5.1 ==> F6.1 $END *COMMENTS Comments from secondary file: P:\Cruise_Data_Processing\2011-60\Processing\hydro\2011-60-0013.mrgcln1s ------------------------------------------------------------------------ Comments from secondary file: P:\Cruise_Data_Processing\2011-60\Processing\hydro\2011-60-0013.oxy ------------------------------------------------------------------- Sample_Number 45: OXY: Only 1st duplicate value reported. Positive skew in majority of duplicate samples likely caused by poor sampling. See notes Sample_Number 51: OXY: Only 1st duplicate value reported. Positive skew in majority of duplicate samples likely caused by poor sampling. See notes Sample_Number 67: OXY: Only 1st duplicate value reported. Positive skew in majority of duplicate samples likely caused by poor sampling. See notes DO: ALL SAMPLES: The difference between duplicates was larger than usual and skewed, which may indicate problems in sampling protocol. The first samples are believed to be more accurate than the second, so those are reported. All DO samples are reported with only 2 decimal places based on the precision study. For more detail see tabs "notes" and "duplicates" in file QF2011-60oxy*.xls. Analysis methods: ----------------- Oxygen samples were analyzed within a week at IOS using an automated Winkler titration system (Brinkmann Dosimat model 765 and a PC950 Colorimeter controlled by AutoOxy software V3.4) with modifications based on Carpenter (1965) and adhering to WOCE protocols (Culberson 1991). For details including a duplicate analysis, see document QF2011-60oxy*.xls. Salinity samples were collected in glass bottles and analyzed on Guildline Autosal model 8400B, S/N 68572, at IOS. Salinometers are standardized with IAPSO standard seawater. Full results are in file 2011-60-sal*.xls. Nutrient samples were collected in plastic tubes. Samples were stored frozen and later analysed at IOS. An Astoria analyzer was used following methods described in Barwell-Clarke and Whitney (1996). File "QF 2011-60nuts*.xls" includes the raw data and a precision study. References: 1. Barwell-Clarke, J. and Whitney, F. 1996. Institute of Ocean Sciences Nutrient Methods and Analysis. Canadian Technical Report of Hydrography and Ocean Sciences, No. 182, 43 pp. 2. Carpenter, J.H. 1965. The Chesapeake Bay Institute Technique for the Winkler Dissolved Oxygen Method. Limmnol. & Oceanogr., 10: 141-143. 3. Culberson, C.H. 1991. Dissolved oxygen. WOCE Hydrographic Programme Operations and Methods (July 1991). 15pp. 4. Holm-Hansen, O., Lorenzen, C.J., Holmes, R.W., and Strickland J.D.H. 1965. Fluorometric Determination of Chlorophyll. J.du Cons. Intl. Pour l’Epl. De la Mer. 30:3-15. 4. Dickson, A. G., C. L. Sabine, and J. R. Christian (2007), Determination of dissolved organic carbon and total dissolved nitrogen in sea water, PICES Special Publication 3. 5. Ianson, D., Susan E. Allen, Benjamin L. Moore-Maley, Sophia C. Johannessen and Robie W. Macdonald (2016), Vulnerability of a semienclosed estuarine sea to ocean acidification in contrast with hypoxia, Geophys. Res. Lett., 43, 5793-5801, doi:10.1002/2016GL068996. * For PDF versions of these papers see folder \\Cruise_Data\DOCUMENTS\Analysis Reference Papers --------------------------------------------------------------------------------- Data Processing Notes: ---------------------- Transmissivity and SBE Fluorescence data are nominal and unedited. For details on how the transmissivity calibration parameters were calculated see the document in folder "\cruise_data\documents\transmissivity". SBE DO calibration was done using the method described in the SeaBird Application NOte #64-2. For further processing details see the processing report 2011-60-proc.doc. *CALIBRATION $TABLE: CORRECTED CHANNELS !Name Units Fmla Pad Coefficients !------------------------------ -------- ---- ------ ------------ Fluorescence:Wetlabs:ECO-AFL mg/m^3 10 -99 () (0.92E-01 1) $END !-1-- 2- 3- --4--- ---5---- --6-- ---7--- ---8---- --9--- --10- -11- --12- ---13--- 14 ---15-- --16- 17 --18- 19 --20- 21 --22-- 23 ---24-- 25 --26-- 27 !Samp Bo Bo Pressu Temperat Trans Fluores Salinity Oxygen Oxyge Numb Tempe Salinity Fl Oxygen: Oxyge Fl Nitra Fl Silic Fl Phosph Fl Carbon: Fl Alkali Fl !le_ tt tt re ure: missi cence: :T0:C0 : n: er_o ratur :Bottle ag Dissolv n: ag te_ ag ate ag ate ag Dissolv ag nity: ag !Numb ~u ~u Primary vity URU: Dissol Disso ~bin e: ~o ed Disso ~o plus_ ~t ~i ~p ed: ~g Total ~T !er mb en Wetlabs ved: lved: _rec Draw tt lved lv Nitri ri ca ha Inorgan an ot ! er ce SBE SBE ords le ed te te te te ic ic al !---- -- -- ------ -------- ----- ------- -------- ------ ----- ---- ----- -------- -- ------- ----- -- ----- -- ----- -- ------ -- ------- -- ------ -- *END OF HEADER 68 24 24 1.9 17.0757 46.8 1.460 21.8930 6.39 281.0 11 -99.0 21.8910 6 -99.000 -99.0 0 0.6 6 33.3 6 0.28 6 1302.67 63 1654.4 6 67 23 23 2.0 17.0783 46.7 1.466 21.8890 6.39 280.9 1 19.9 -99.0000 0 6.340 278.8 0 -99.0 0 -99.0 0 -99.00 0 -99.00 9 -99.0 9 65 21 21 4.9 17.0507 46.8 1.588 21.9172 6.38 280.3 1 16.8 -99.0000 0 6.340 278.7 0 -99.0 0 -99.0 0 -99.00 0 -99.00 9 -99.0 9 66 22 22 4.9 17.0490 46.9 1.557 21.9119 6.38 280.3 11 -99.0 21.9554 0 -99.000 -99.0 0 0.8 0 35.7 0 0.30 0 1502.51 0 1655.5 0 63 19 19 10.2 14.5989 53.6 1.557 24.7761 5.60 245.7 1 14.0 -99.0000 0 5.470 239.7 0 -99.0 0 -99.0 0 -99.00 0 -99.00 9 -99.0 9 64 20 20 10.2 15.1189 50.3 1.480 24.1980 5.71 250.6 11 -99.0 24.7806 0 -99.000 -99.0 0 10.2 0 42.0 0 1.10 0 1698.76 0 1748.2 0 62 18 18 14.8 10.9673 56.4 0.703 27.4232 4.45 194.7 11 -99.0 27.5698 0 -99.000 -99.0 0 22.4 0 49.3 0 1.90 0 1886.41 0 1897.5 0 61 17 17 14.9 10.9771 56.7 0.733 27.4120 4.45 194.5 1 10.9 -99.0000 0 4.440 194.0 0 -99.0 0 -99.0 0 -99.00 0 -99.00 9 -99.0 9 60 16 16 25.2 9.7329 58.1 0.414 28.6328 4.14 180.8 11 -99.0 28.8572 0 -99.000 -99.0 0 26.1 0 50.6 0 2.20 0 1980.69 0 2169.3 3 59 15 15 25.3 9.7276 58.0 0.398 28.6388 4.14 180.7 2 9.7 -99.0000 0 4.080 178.3 0 -99.0 0 -99.0 0 -99.00 0 -99.00 9 -99.0 9 57 13 13 49.9 8.9482 58.9 0.214 29.4622 4.04 176.3 2 9.2 -99.0000 0 4.030 176.0 0 -99.0 0 -99.0 0 -99.00 0 -99.00 9 -99.0 9 58 14 14 50.0 8.9373 58.7 0.242 29.4696 4.04 176.2 11 -99.0 29.4771 0 -99.000 -99.0 0 28.2 0 50.6 0 2.40 0 2023.65 0 2019.5 3 55 11 11 75.1 8.3919 57.3 0.215 29.9528 4.07 177.5 2 8.9 -99.0000 0 4.060 177.1 0 -99.0 0 -99.0 0 -99.00 0 -99.00 9 -99.0 9 56 12 12 75.1 8.3908 57.3 0.220 29.9539 4.08 177.9 11 -99.0 29.9840 0 -99.000 -99.0 0 29.6 0 51.7 0 2.40 0 2041.83 0 2056.1 0 53 9 9 100.3 8.3221 56.7 0.184 30.1780 4.04 176.4 2 8.5 -99.0000 0 4.050 176.6 0 -99.0 0 -99.0 0 -99.00 0 -99.00 9 -99.0 9 54 10 10 100.4 8.3220 55.7 0.184 30.1780 4.05 176.5 11 -99.0 30.1777 0 -99.000 -99.0 0 29.5 0 53.7 0 2.50 0 2057.81 0 2049.6 3 51 7 7 150.0 8.4088 56.2 0.184 30.4243 3.76 164.1 2 8.6 -99.0000 0 3.760 163.9 0 -99.0 0 -99.0 0 -99.00 0 -99.00 9 -99.0 9 52 8 8 150.0 8.4090 56.1 0.184 30.4243 3.76 164.1 11 -99.0 30.4328 6 -99.000 -99.0 0 29.9 6 61.0 6 2.57 6 2074.54 6 2077.4 63 49 5 5 200.4 8.5110 55.3 0.184 30.5013 3.62 157.9 2 8.7 -99.0000 0 3.640 158.8 0 -99.0 0 -99.0 0 -99.00 0 -99.00 9 -99.0 9 50 6 6 200.4 8.5110 55.6 0.184 30.5013 3.62 157.8 11 -99.0 30.5012 0 -99.000 -99.0 0 29.4 0 60.3 0 2.60 0 2084.19 0 2100.2 0 47 3 3 249.0 8.5646 52.5 0.184 30.5389 3.49 152.4 3 8.7 -99.0000 0 3.500 152.6 0 -99.0 0 -99.0 0 -99.00 0 -99.00 9 -99.0 9 48 4 4 249.0 8.5646 52.4 0.184 30.5388 3.50 152.5 11 -99.0 30.5406 0 -99.000 -99.0 0 27.2 0 60.5 0 2.50 0 2091.09 3 2063.4 0 45 1 1 329.6 8.6557 40.1 0.214 30.5702 2.95 128.7 2 8.7 -99.0000 0 2.960 128.9 0 -99.0 0 -99.0 0 -99.00 0 -99.00 9 -99.0 9 46 2 2 329.6 8.6559 40.2 0.242 30.5701 2.95 128.8 11 -99.0 30.5698 6 -99.000 -99.0 0 30.6 6 83.0 6 2.88 6 2109.14 63 2090.4 6