*2018/05/31 15:49:00.71 *IOS HEADER VERSION 2.0 2016/04/28 2016/06/13 IVF16 *FILE START TIME : UTC 2011/04/05 14:15:25.000 TIME INCREMENT : 0 0 0 0.416667E-01 0 ! (day hr min sec ms) NUMBER OF RECORDS : 24 DATA DESCRIPTION : Bottle:Rosette:Up:Stop + CTD:Up FILE TYPE : ASCII CRC : 6E21203 NUMBER OF CHANNELS : 25 $TABLE: CHANNELS ! No Name Units Minimum Maximum !--- --------------------------------- --------------- -------------- -------------- 1 Sample_Number n/a 21 44 2 Bottle_Number n/a 1 24 3 Bottle:Firing_Sequence n/a 1 24 4 Pressure decibar 4.2 333.6 5 Temperature:Primary 'deg C (ITS90)' 7.7047 9.157 6 Transmissivity %/metre 42.2 55.5 7 Fluorescence:URU:Seapoint mg/m^3 0.66E-01 4.124 8 Salinity:T0:C0 PSS-78 28.4759 30.7077 9 Oxygen:Dissolved:SBE mL/L 3.29 7.42 10 Oxygen:Dissolved:SBE umol/kg 143.5 324 11 Number_of_bin_records n/a 37 241 12 Salinity:Bottle PSS-78 28.4776 30.7218 13 Flag:Salinity:Bottle n/a 14 Oxygen:Dissolved mL/L 3.2 8.349 15 Flag:Oxygen:Dissolved n/a 16 Nitrate_plus_Nitrite umol/L 19.7 30.6 17 Flag:Nitrate_plus_Nitrite n/a 18 Silicate umol/L 36.6 63.4 19 Flag:Silicate n/a 20 Phosphate umol/L 1.82 2.64 21 Flag:Phosphate n/a 22 Carbon:Dissolved:Inorganic umol/kg 1878.25 2096.01 23 Flag:Carbon:Dissolved:Inorganic n/a 24 Alkalinity:Total umol/kg 1962.27 2096.93 25 Flag:Alkalinity:Total n/a $END $TABLE: CHANNEL DETAIL ! No Pad Start Width Format Type Decimal_Places !--- ---- ----- ----- ------ ---- -------------- 1 -9 ' ' 5 I I 0 2 -99 ' ' 3 I I 0 3 -99 ' ' 3 I I 0 4 -99 ' ' 7 F ' ' 1 5 -99 ' ' 9 F ' ' 4 6 -99 ' ' 6 F ' ' 1 7 -99 ' ' 8 F ' ' 3 8 -99 ' ' 9 F ' ' 4 9 -99 ' ' 7 F ' ' 2 10 -99 ' ' 6 F ' ' 1 11 ' ' ' ' 5 I I 0 12 -99 ' ' 9 F R4 4 13 0 ' ' 3 NQ C ' ' 14 -99 ' ' 8 F R4 3 15 0 ' ' 3 NQ C ' ' 16 -99 ' ' 6 F R4 1 17 0 ' ' 3 NQ C ' ' 18 -99 ' ' 6 F R4 1 19 0 ' ' 3 NQ C ' ' 20 -99 ' ' 7 F R4 2 21 0 ' ' 3 NQ C ' ' 22 -99 ' ' 8 F R4 2 23 0 ' ' 3 NQ C ' ' 24 -99 ' ' 7 F R4 1 25 0 ' ' 3 NQ C ' ' $END $REMARKS Flag channels initialized with zeros. Non-zero values have the following significance: -------------------------------------------------------------------------------------- 1 = Sample for this measurement was drawn from water bottle but not analyzed (not normally used). 2 = Acceptable measurement (not normally used). 3 = Questionable measurement (no problem observed in sampling or analysis, but value is not trusted, nonetheless; includes outlyers). 4 = Bad measurement (known problem with sampling or analysis, but not serious enough to completely discard the value). 5 = Not reported (lost sample; unredeemably bad measurement). 6 = Mean of replicate measurements. 7 = Manual chromatographic peak measurement. 8 = Irregular digital chromatographic peak integration. 9 = Sample not drawn for this measurement from this bottle (not normally used). -------------------------------------------------------------------------------------- $END *ADMINISTRATION MISSION : 2011-28 AGENCY : IOS, Ocean Sciences Division, Sidney, B.C. COUNTRY : Canada PROJECT : SoG Moorings SCIENTIST : Johannessen S. PLATFORM : Vector *LOCATION GEOGRAPHIC AREA : Strait of Georgia STATION : SOGN EVENT NUMBER : 12 LATITUDE : 49 50.02000 N ! (deg min) LONGITUDE : 124 51.94000 W ! (deg min) WATER DEPTH : 338 ALTIMETER (M) : 4.98 ! custom item $REMARKS Altimeter value is distance from bottom and is calculated as the median of the deepest 2 metres of data. $END *INSTRUMENT TYPE : Sea-Bird CTD MODEL : SBE-911plus SERIAL NUMBER : 941 $REMARKS SOFTWARE VERSION SEASAVE V 7.20G $END *HISTORY $TABLE: PROGRAMS ! Name Vers Date Time Recs In Recs Out ! ------------------------ ------ ---------- -------- --------- --------- SBE_IOS 3.1 2011/10/28 15:42:49 3552 3552 CLEAN 5.0.3 2011/10/28 15:44:22 ? ? ADDSAMP 3.5 2011/10/28 15:44:51 3552 3552 BINAVE 4.1.1 2011/10/28 15:45:09 3552 24 MERGE 3.4 2011/11/01 16:09:27 24 24 CLEAN 5.0.3 2011/11/01 16:09:30 24 24 SORT 3.5 2011/11/01 16:09:34 24 24 REMOVECH 8.0 2011/11/01 16:09:37 24 24 CHGUNITS 3.0 2011/11/01 16:09:41 24 24 REORDER 1.3 2011/11/01 16:09:45 ? ? HDREDIT2 2.5.1 2011/11/01 16:09:51 ? ? CHANGE_CTD_CHANNEL_NAMES 1.0 2013/12/16 15:36:37 24 24 CHANGE_FLAGS 2.0 2014/11/20 09:57:52 24 24 SORT 3.6 2016/11/29 13:19:53 24 24 MERGE 3.5 2016/12/14 13:29:32 24 24 SORT 3.6 2018/05/31 11:25:46 24 24 CLEAN 5.2.3 2018/05/31 11:26:06 24 24 CLEAN 5.2.3 2018/05/31 11:26:16 24 24 HDREDIT2 3.1.1 2018/05/31 15:49:00 ? ? $END $REMARKS -CLEAN functions: 2011/10/28 15:44:21 20 Set event to last 4 characters of file name -The following ADDSAMP parameters were used: Sample Number Lookup File: P:\Cruise_Data_Processing\2011-28\Processing\hydro\addsamp.csv Bottle Channel Name: Bottle_Number -The following BINAVE parameters were used: Bin channel = Bottle_Number Averaging interval = 1.00 Minimum bin value = 0.000 Average value was used Interpolated values were NOT used for empty bins Channel 'NUMBER_OF_BIN_RECORDS' was added to file. -The following MERGE parameters were used: 2011/11/01 16:09:27 2011/11/01 16:09:27 2011/11/01 16:09: Merge Channel: Bottle_Number Merge Scheme Used: Add Secondary to Primary Overlap Scheme Used: Keep Primary Primary Channels to Include: ALL Secondary Channels to Include: Salinity:Bottle, Flag:Salinity:Bottle, Chlorophyll:Extracted, Flag:Chlorophyll:Extracted, Phaeo-Pigment:Extracted, Oxygen:Dissolved, Flag:Oxygen:Dissolved, Temperature:Draw, Nitrate_plus_Nitrite, Flag:Nitrate_plus_Nitrite, Silicate, Flag:Silicate, Phosphate, Flag:Phosphate, Ammonium, Flag:Ammonium Primary file : P:\Cruise_Data_Processing\2011-28\Processing\hydro\2011-28-0012.samavg Secondary file: P:\Cruise_Data_Processing\2011-28\Processing\hydro\2011-28-0012.mrgcln1s Comments from secondary file: P:\Cruise_Data_Processing\2011-28\Processing\hydro\2011-28-0012.mrgcln1s ------------------------------------------------------------------------ -SORT parameters: 2011/11/01 16:09:05 Sorted in ascending order of channel Bottle_Number -CLEAN functions: 2011/11/01 16:09:30 20 Reset #RECS, MIN & MAX values in header. Remove Sea-Bird comments from the header. -SORT parameters: 2011/11/01 16:09:34 Sorted in ascending order of channel Pressure [dbars] -REMOVECH 2011/11/01 16:09:37 The following CHANNEL(S) were removed: Scan_Number Temperature:Secondary [deg C (ITS90)] Conductivity:Primary [S/m] Conductivity:Secondary [S/m] Oxygen:Voltage:SBE [volts] Altimeter [metres] Status:Pump Descent_Rate [m/s] Salinity:T1:C1 [PSS-78] Flag -CHANGE units: 'Oxygen:Dissolved:SBE [mL/L]' changed from mL/L to umol/kg -HEADER EDITS: 2011/11/01 16:09:51 Applied edit header: P:\Cruise_Data_Processing\2011-28\Processing\doc\2011-28-bot-hdr.txt Channel 2: Bottle:Firing_Sequence [n/a] Name: Bottle_Number ==> Bottle:Firing_Sequence Channel 3: Pressure [decibar] Units: dbars ==> decibar Format: F10.3 ==> F7.1 Channel 6: Fluorescence:URU:Seapoint [mg/m^3] Name: Fluorescence:Seapoint ==> Fluorescence:URU:Seapoint Channel 1: Bottle_Number [n/a] Name: Bottle:Position ==> Bottle_Number Channel 1: Bottle_Number [n/a] Name: Bottle:Position ==> Bottle_Number Channel 8: Oxygen:Dissolved:SBE [mL/L] Format: F8.3 ==> F7.2 Channel 14: Oxygen:Dissolved [mL/L] Units: ==> mL/L Channel 18: Silicate [umol/L] Format: F7.2 ==> F6.1 Channel 9: Oxygen:Dissolved:SBE [umol/kg] Format: F6.2 ==> F6.1 -SORT parameters: 2016/11/29 13:19:53 Sorted in ascending order of channel Sample_Number -The following MERGE parameters were used: 2016/12/14 13:29:32 Merge Channel: Sample_Number Merge Scheme Used: Add Secondary to Primary Overlap Scheme Used: Keep Primary Primary Channels to Include: ALL Secondary Channels to Include: Carbon:Dissolved:Inorganic, Flag:Carbon:Dissolved:Inorganic, Alkalinity:Total, Flag:Alkalinity:Total, pH, Flag:pH Primary file : C:\DATA\Debby\2011-28-0012.chesort Secondary file: C:\DATA\Debby\2011-28-0012.dic -SORT parameters: 2018/05/31 11:25:46 Sorted in ascending order of channel Pressure -CLEAN functions: 2018/05/31 11:26:06 Reset #RECS, MIN & MAX values in header. Change character data from "2" to "0" Delete Empty Channels: 2 deleted. -CLEAN functions: 2018/05/31 11:26:16 Change character data from " " to "0" -HEADER EDITS: 2018/05/31 15:49:00 Applied edit header: P:\Cruise_Data_Processing\Ianson-carbon\2011-28\Processing\2011-28-hdr.txt Channel 1: Sample_Number [n/a] Pad: -99 ==> -9 Channel 23: Flag:Carbon:Dissolved:Inorganic [n/a] Units: ==> n/a Channel 24: Alkalinity:Total [umol/kg] Format: F8.2 ==> F7.1 Channel 25: Flag:Alkalinity:Total [n/a] Units: ==> n/a $END *COMMENTS Comments from secondary file: P:\Cruise_Data_Processing\2011-28\Processing\hydro\2011-28-0012.mrgcln1s ------------------------------------------------------------------------ Comments from secondary file: P:\Cruise_Data_Processing\2011-28\Processing\hydro\2011-28-0012.sal ------------------------------------------------------------------- Sample_Numbers 22-44: SAL: bottle samples not trusted, long delay before analysis and values seem high overall Comments from secondary file: P:\Cruise_Data_Processing\2011-28\Processing\hydro\2011-28-0012.oxy ------------------------------------------------------------------- Sample_Number 39: OXY: Outlier in profile and in comparison of Bottles with CTD DO. Analysis methods: ----------------- Oxygen samples were analyzed at sea using an automated Winkler titration system (Brinkmann Dosimat model 665 and a UV light source and detector with a 365 nm filter controlled by LVO2 software designed and built by Scripps Institution of Oceanography) with modifications based on Carpenter (1965) and adhering to WOCE protocols (Culberson 1991). For details including a duplicate analysis, see document 2011-28oxy*.xls. Salinity samples were collected in glass bottles and analyzed on Guildline Autosal model 8400B, S/N 68572, at IOS. Salinometers are standardized with IAPSO standard seawater. Full results are in file 2011-28sal*.xls. Nutrient samples were collected in plastic tubes. Samples were stored frozen and later analysed at IOS. An Astoria analyzer was used following methods described in Barwell-Clarke and Whitney (1996). File "QF 2011-28nuts*.xls" includes the raw data and a precision study. References: 1. Barwell-Clarke, J. and Whitney, F. 1996. Institute of Ocean Sciences Nutrient Methods and Analysis. Canadian Technical Report of Hydrography and Ocean Sciences, No. 182, 43 pp. 2. Carpenter, J.H. 1965. The Chesapeake Bay Institute Technique for the Winkler Dissolved Oxygen Method. Limmnol. & Oceanogr., 10: 141-143. 3. Culberson, C.H. 1991. Dissolved oxygen. WOCE Hydrographic Programme Operations and Methods (July 1991). 15pp. 4. Holm-Hansen, O., Lorenzen, C.J., Holmes, R.W., and Strickland J.D.H. 1965. Fluorometric Determination of Chlorophyll. J.du Cons. Intl. Pour l’Epl. De la Mer. 30:3-15. 4. Dickson, A. G., C. L. Sabine, and J. R. Christian (2007), Determination of dissolved organic carbon and total dissolved nitrogen in sea water, PICES Special Publication 3. 5. Ianson, D., Susan E. Allen, Benjamin L. Moore-Maley, Sophia C. Johannessen and Robie W. Macdonald (2016), Vulnerability of a semienclosed estuarine sea to ocean acidification in contrast with hypoxia, Geophys. Res. Lett., 43, 5793-5801, doi:10.1002/2016GL068996. * For PDF versions of these papers see folder \\Cruise_Data\DOCUMENTS\Analysis Reference Papers --------------------------------------------------------------------------------- Data Processing Notes: ---------------------- Transmissivity, PAR and SBE Fluorescence data are nominal and unedited. For details on how the transmissivity calibration parameters were calculated see the document in folder "\cruise_data\documents\transmissivity". SBE DO calibration was done using the method described in the SeaBird Application NOte #64-2. For further processing details see the processing report 2011-28-proc.doc. !-1-- 2- 3- --4--- ---5---- --6-- ---7--- ---8---- --9--- --10- -11- ---12--- 13 ---14-- 15 --16- 17 --18- 19 --20-- 21 ---22-- 23 --24-- 25 !Samp Bo Bo Pressu Temperat Trans Fluores Salinity Oxygen Oxyge Numb Salinity Fl Oxygen: Fl Nitra Fl Silic Fl Phosph Fl Carbon: Fl Alkali Fl !le_ tt tt re ure: missi cence: :T0:C0 : n: er_o :Bottle ag Dissolv ag te_ ag ate ag ate ag Dissolv ag nity: ag !Numb ~u ~u Primary vity URU: Dissol Disso ~bin ~o ed ~o plus_ ~t ~i ~p ed: ~g Total ~T !er mb en Seapoin ved: lved: _rec tt lv Nitri ri ca ha Inorgan an ot ! er ce t SBE SBE ords le ed te te te te ic ic al !---- -- -- ------ -------- ----- ------- -------- ------ ----- ---- -------- -- ------- -- ----- -- ----- -- ------ -- ------- -- ------ -- *END OF HEADER 43 23 23 4.2 7.7076 42.2 4.124 28.4764 7.35 321.0 49 -99.0000 0 7.397 6 -99.0 0 -99.0 0 -99.00 0 -99.00 9 -99.0 9 44 24 24 4.2 7.7067 42.4 3.845 28.4759 7.37 321.9 241 28.4850 36 -99.000 0 20.3 6 37.4 6 1.82 6 1879.85 6 1981.7 6 41 21 21 4.5 7.7059 42.2 3.797 28.4760 7.40 323.1 48 -99.0000 0 7.401 0 -99.0 0 -99.0 0 -99.00 0 -99.00 9 -99.0 9 42 22 22 4.6 7.7051 42.2 3.749 28.4762 7.41 323.6 241 28.4902 3 -99.000 0 19.7 0 36.6 0 1.93 0 -99.00 9 -99.0 9 39 19 19 8.9 7.7059 42.3 4.091 28.4760 7.39 322.7 105 -99.0000 0 8.349 4 -99.0 0 -99.0 0 -99.00 0 -99.00 9 -99.0 9 40 20 20 8.9 7.7047 42.4 4.051 28.4759 7.42 324.0 241 28.4776 3 -99.000 0 20.3 0 37.8 0 1.82 0 1878.25 0 1962.3 0 37 17 17 14.2 7.7282 42.5 3.976 28.4828 7.40 323.4 97 -99.0000 0 7.382 0 -99.0 0 -99.0 0 -99.00 0 -99.00 9 -99.0 9 38 18 18 14.2 7.7138 42.5 3.897 28.4789 7.41 323.8 241 28.4826 3 -99.000 0 20.4 0 37.8 0 1.83 0 -99.00 9 -99.0 9 35 15 15 23.6 7.7728 44.2 3.650 28.6109 7.36 321.4 37 -99.0000 0 7.314 0 -99.0 0 -99.0 0 -99.00 0 -99.00 9 -99.0 9 36 16 16 23.6 7.7719 44.0 3.698 28.6107 7.36 321.3 241 28.5984 3 -99.000 0 21.2 0 39.6 0 1.94 0 1890.28 0 1972.8 0 34 14 14 48.9 7.7674 50.7 1.184 29.1559 5.98 261.1 241 29.1628 36 -99.000 0 27.3 6 54.7 6 2.35 6 -99.00 9 -99.0 9 33 13 13 49.0 7.7675 50.5 1.014 29.1566 6.00 261.8 44 -99.0000 0 5.979 6 -99.0 0 -99.0 0 -99.00 0 -99.00 9 -99.0 9 32 12 12 73.9 8.3112 55.2 0.141 29.8099 4.53 197.7 241 29.8174 3 -99.000 0 30.2 0 59.1 0 2.47 0 2029.35 0 2048.5 0 31 11 11 74.0 8.3114 55.4 0.143 29.8100 4.55 198.7 53 -99.0000 0 4.550 0 -99.0 0 -99.0 0 -99.00 0 -99.00 9 -99.0 9 29 9 9 98.9 8.6697 55.5 0.090 30.2113 4.08 177.9 46 -99.0000 0 4.213 0 -99.0 0 -99.0 0 -99.00 0 -99.00 9 -99.0 9 30 10 10 99.0 8.6692 55.4 0.091 30.2106 4.09 178.6 241 30.2078 3 -99.000 0 30.3 0 57.6 0 2.55 0 -99.00 9 -99.0 9 27 7 7 148.5 8.8123 53.1 0.073 30.4497 3.88 169.1 40 -99.0000 0 3.977 6 -99.0 0 -99.0 0 -99.00 0 -99.00 9 -99.0 9 28 8 8 148.6 8.8124 53.1 0.073 30.4461 3.89 169.5 241 30.4487 3 -99.000 0 30.6 6 59.1 6 2.57 6 2072.02 0 2076.0 0 25 5 5 199.0 8.9107 52.9 0.071 30.5675 3.69 160.7 37 -99.0000 0 3.666 0 -99.0 0 -99.0 0 -99.00 0 -99.00 9 -99.0 9 26 6 6 199.1 8.9144 52.6 0.073 30.5696 3.71 161.8 241 30.5545 3 -99.000 0 30.4 0 59.7 0 2.55 0 -99.00 9 -99.0 9 23 3 3 249.6 8.9534 50.4 0.066 30.6197 3.61 157.2 61 -99.0000 0 3.684 0 -99.0 0 -99.0 0 -99.00 0 -99.00 9 -99.0 9 24 4 4 249.6 8.9525 50.4 0.068 30.6192 3.60 157.1 241 30.6237 3 -99.000 0 30.4 0 61.2 0 2.53 0 -99.00 9 -99.0 9 21 1 1 333.6 9.1558 45.1 0.077 30.7072 3.29 143.5 43 -99.0000 0 3.200 0 -99.0 0 -99.0 0 -99.00 0 -99.00 9 -99.0 9 22 2 2 333.6 9.1570 45.2 0.069 30.7077 3.29 143.6 241 30.7218 36 -99.000 0 30.5 6 63.4 6 2.64 6 2096.01 0 2096.9 0