*2014/11/20 09:57:50.22 *IOS HEADER VERSION 1.10 2011/10/26 2011/10/26 *FILE START TIME : UTC 2011/08/19 01:30:55.000 TIME INCREMENT : 0 0 0 0.416667E-01 0 ! (day hr min sec ms) NUMBER OF RECORDS : 19 DATA DESCRIPTION : Bottle:Rosette:Up:Stop + CTD:Up FILE TYPE : ASCII CRC : 39280A3 NUMBER OF CHANNELS : 23 $TABLE: CHANNELS ! No Name Units Minimum Maximum !--- --------------------------- --------------- -------------- -------------- 1 Bottle_Number n/a 1 19 2 Bottle:Firing_Sequence n/a 1 19 3 Pressure decibar 5.3 1315 4 Temperature:Secondary 'deg C (ITS90)' 2.8191 16.3583 5 Transmissivity %/metre 49.3 65.9 6 Fluorescence:URU:Wetlabs mg/m^3 0.32E-01 1.536 7 Salinity:T1:C1 PSS-78 32.1829 34.4911 8 Oxygen:Dissolved:SBE mL/L 0.22 6.65 9 Oxygen:Dissolved:SBE umol/kg 9.6 289.7 10 Number_of_bin_records n/a 241 241 11 Sample_Number n/a 62 80 12 Temperature:Draw 'deg C (ITS90)' 4 16.3 13 Salinity:Bottle PSS-78 32.1857 34.4631 14 Flag:Salinity:Bottle n/a 15 Oxygen:Dissolved mL/L 0.245 6.642 16 Oxygen:Dissolved umol/kg 10.6 289.3 17 Flag:Oxygen:Dissolved n/a 18 Nitrate_plus_Nitrite umol/L 0.1709 44.42302 19 Flag:Nitrate_plus_Nitrite n/a 20 Silicate umol/L 2.5 148.3 21 Flag:Silicate n/a 22 Phosphate umol/L 0.32852 3.36302 23 Flag:Phosphate n/a $END $TABLE: CHANNEL DETAIL ! No Pad Start Width Format Type Decimal_Places !--- ---- ----- ----- ------ ---- -------------- 1 -99 ' ' 3 I I 0 2 -99 ' ' 3 I I 0 3 -99 ' ' 7 F ' ' 1 4 -99 ' ' 9 F ' ' 4 5 -99 ' ' 6 F ' ' 1 6 -99 ' ' 8 F ' ' 3 7 -99 ' ' 9 F ' ' 4 8 -99 ' ' 7 F ' ' 2 9 -99 ' ' 6 F ' ' 1 10 ' ' ' ' 5 I I 0 11 -99 ' ' 5 I I 0 12 -99 ' ' 9 F R4 4 13 -99 ' ' 9 F R4 4 14 0 ' ' 3 NQ C ' ' 15 -99 ' ' 8 F R4 3 16 -99 ' ' 6 F ' ' 1 17 0 ' ' 3 NQ C ' ' 18 -99 ' ' 6 F R4 1 19 0 ' ' 3 NQ C ' ' 20 -99 ' ' 6 F R4 1 21 0 ' ' 3 NQ C ' ' 22 -99 ' ' 7 F R4 2 23 0 ' ' 3 NQ C ' ' $END $REMARKS Flag channels initialized with zeros. Non-zero values have the following significance: -------------------------------------------------------------------------------------- 1 = Sample for this measurement was drawn from water bottle but not analyzed (not normally used). 2 = Acceptable measurement (not normally used). 3 = Questionable measurement (no problem observed in sampling or analysis, but value is not trusted, nonetheless; includes outlyers). 4 = Bad measurement (known problem with sampling or analysis, but not serious enough to completely discard the value). 5 = Not reported (lost sample; unredeemably bad measurement). 6 = Mean of replicate measurements. 7 = Manual chromatographic peak measurement. 8 = Irregular digital chromatographic peak integration. 9 = Sample not drawn for this measurement from this bottle (not normally used). -------------------------------------------------------------------------------------- $END *ADMINISTRATION MISSION : 2011-27 AGENCY : IOS, Ocean Sciences Division, Sidney, B.C. COUNTRY : Canada PROJECT : Line P SCIENTIST : Robert M. PLATFORM : John P. Tully *LOCATION GEOGRAPHIC AREA : North-East Pacific STATION : P4 EVENT NUMBER : 12 LATITUDE : 48 39.01000 N ! (deg min) LONGITUDE : 126 39.97000 W ! (deg min) WATER DEPTH : 1320 ALTIMETER (M) : 14.92 ! custom item $REMARKS Altimeter value is distance from bottom and is calculated as the median of the deepest 2 metres of data. $END *INSTRUMENT TYPE : Sea-Bird CTD MODEL : SBE-911plus SERIAL NUMBER : 0550 LOCATION : Mid-ship ! custom item $REMARKS SOFTWARE VERSION SEASAVE V 7.21B $END *HISTORY $TABLE: PROGRAMS ! Name Vers Date Time Recs In Recs Out ! ------------------------ ------ ---------- -------- --------- --------- SBE_IOS 3.1 2012/02/03 13:04:21 4579 4579 CLEAN 5.0.4 2012/02/03 13:05:12 ? ? ADDSAMP 3.5 2012/02/03 13:12:45 4579 4579 BINAVE 4.1.1 2012/02/03 13:13:25 4579 19 MERGE 3.4 2012/02/03 13:13:45 19 19 CLEAN 5.0.4 2012/02/03 13:23:00 19 19 CALIB 11.7 2012/02/14 13:36:20 19 19 SORT 3.5 2012/02/14 15:58:35 19 19 REMOVECH 8.1.1 2012/02/14 16:00:27 19 19 CHGUNITS 3.0 2012/02/14 16:08:17 19 19 CHGUNITS 3.0 2012/02/14 16:08:33 19 19 REORDER 1.3 2012/02/14 16:10:10 ? ? HDREDIT2 2.5.1 2012/03/28 13:51:19 ? ? CALIB 11.7 2013/06/04 13:16:49 19 19 HDREDIT2 2.6 2013/07/08 08:51:38 ? ? CHANGE_CTD_CHANNEL_NAMES 1.0 2013/12/16 15:36:35 19 19 CHANGE_FLAGS 2.0 2014/11/20 09:57:50 19 19 $END $REMARKS -CLEAN functions: 2012/02/03 13:05:09 20 Set event to last 4 characters of file name -The following ADDSAMP parameters were used: Sample Number Lookup File: P:\Cruise_Data_Processing\2011-27\Processing\hydro\addsamp.csv Bottle Channel Name: Bottle_Number -The following BINAVE parameters were used: Bin channel = Bottle_Number Averaging interval = 1.00 Minimum bin value = 0.000 Average value was used Interpolated values were NOT used for empty bins Channel 'NUMBER_OF_BIN_RECORDS' was added to file. -The following MERGE parameters were used: 2012/02/03 13:13:45 2012/02/03 13:13:45 2012/02/03 13:13: Merge Channel: Bottle_Number Merge Scheme Used: Add Secondary to Primary Overlap Scheme Used: Keep Primary Primary Channels to Include: ALL Secondary Channels to Include: Event_Number, Salinity:Bottle, Flag:Salinity:Bottle, Chlorophyll:Extracted, Flag:Chlorophyll:Extracted, Phaeo-Pigment:Extracted, Oxygen:Dissolved, Flag:Oxygen:Dissolved, Temperature:Draw, Nitrate_plus_Nitrite, Flag:Nitrate_plus_Nitrite, Silicate, Flag:Silicate, Phosphate, Flag:Phosphate, Dimethyl_Sulphide, Flag:Dimethyl_Sulphide Primary file : P:\Cruise_Data_Processing\2011-27\Processing\hydro\2011-27-0012.samavg Secondary file: P:\Cruise_Data_Processing\2011-27\Processing\hydro\2011-27-0012.mrgcln1s Comments from secondary file: P:\Cruise_Data_Processing\2011-27\Processing\hydro\2011-27-0012.mrgcln1s ------------------------------------------------------------------------ -SORT parameters: 2012/02/02 16:58:27 Sorted in ascending order of channel Bottle_Number -CLEAN functions: 2012/02/03 13:23:00 20 Reset #RECS, MIN & MAX values in header. Remove Sea-Bird comments from the header. -CALIB parameters: 2012/02/14 13:36:20 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = P:\Cruise_Data_Processing\2011-27\Processing\doc\2011-27-recal.ccf Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 9 Fluorescence:Wetlabs:ECO-AFL mg/m^3 10 0.9100000E-01 0.1000000E+01 18 Oxygen:Dissolved:SBE mL/L 10 -0.2590000E-01 0.1002700E+01 -SORT parameters: 2012/02/14 15:58:35 Sorted in ascending order of channel Pressure [dbars] -REMOVECH 2012/02/14 16:00:27 The following CHANNEL(S) were removed: Scan_Number Temperature:Primary [deg C (ITS90)] Conductivity:Primary [S/m] Conductivity:Secondary [S/m] Oxygen:Voltage:SBE [volts] PAR [uE/m^2/sec] Altimeter [metres] Status:Pump Descent_Rate [m/s] Salinity:T0:C0 [PSS-78] Flag -CHANGE units: 'Oxygen:Dissolved:SBE' changed from mL/L to umol/kg -CHANGE units: 'Oxygen:Dissolved' changed from mL/L to umol/kg -HEADER EDITS: 2012/03/28 13:51:19 Applied edit header: P:\Cruise_Data_Processing\2011-27\Processing\doc\2011-27-bot-hdr.txt Channel 2: Bottle:Firing_Sequence [n/a] Name: Bottle_Number ==> Bottle:Firing_Sequence Channel 1: Bottle_Number [n/a] Name: Bottle:Position ==> Bottle_Number Channel 3: Pressure [decibar] Units: dbars ==> decibar Format: F10.3 ==> F7.1 Channel 6: Fluorescence:URU:Wetlabs [mg/m^3] Name: Fluorescence:Wetlabs:ECO-AFL ==> Fluorescence:URU:Wetlabs Channel 7: Salinity:Practical:T1:C1 [PSS-78] Name: Salinity:T1:C1 ==> Salinity:Practical:T1:C1 Channel 8: Oxygen:Dissolved:SBE [mL/L] Format: F8.3 ==> F7.2 Channel 9: Oxygen:Dissolved:SBE [umol/kg] Format: F6.2 ==> F6.1 Channel 14: Flag:Salinity:Bottle [n/a] Units: ==> n/a Channel 15: Oxygen:Dissolved [mL/L] Units: ==> mL/L Channel 16: Oxygen:Dissolved [umol/kg] Format: F6.2 ==> F6.1 Channel 17: Flag:Oxygen:Dissolved [n/a] Units: ==> n/a Channel 18: Nitrate_plus_Nitrite [umol/L] Units: ==> umol/L Channel 19: Flag:Nitrate_plus_Nitrite [n/a] Units: ==> n/a Channel 20: Silicate [umol/L] Units: ==> umol/L Format: F7.2 ==> F6.1 Channel 21: Flag:Silicate [n/a] Units: ==> n/a Channel 22: Phosphate [umol/L] Units: ==> umol/L Channel 23: Flag:Phosphate [n/a] Units: ==> n/a -CALIB parameters: 2013/06/04 13:16:49 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = C:\DATA\Nutrients\doc\Nutrients-recal1.ccf Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 18 Nitrate_plus_Nitrite umol/L 10 0.1709000E+00 0.9812000E+00 22 Phosphate umol/L 10 0.4530000E-01 0.1011500E+01 -HEADER EDITS: 2013/07/08 08:51:38 Applied edit header: C:\DATA\Nutrients\doc\headedit-correction.txt $END *COMMENTS Comments from secondary file: P:\Cruise_Data_Processing\2011-27\Processing\hydro\2011-27-0012.mrgcln1s ------------------------------------------------------------------------ Comments from secondary file: P:\Cruise_Data_Processing\2011-27\Processing\hydro\2011-27-0012.oxy ------------------------------------------------------------------- Sample_Number 63: SAL: Replicates Chauvenet outlier. One of replicates outlier in COMPARE so r Sample_Number 66: ALL: Niskin empty Sample_Number 70: ALL: Niskin empty Sample_Number 72: ALL: misfire, all samples look to be from well above firing level. Analysis methods: ----------------- Chlorophyll samples were filtered onto 25mm GF/F filters and stored in glass scintillation vials at -20C prior to analysis. Samples were extracted in 90% acetone at -20C for 24 hours and analyzed on a Turner 10AU fluorometer which is calibrated annually with commercially pure chlorophyll a (Sigma). Fluorescence readings taken before and after acidification were used to calculate chlorophyll and phaeopigment concentrations (Holm-Hansen et al 1965). Chlorophyll samples were analyzed on board ship in a controlled temperature lab. The average of two samples is reported. Variability is assessed as the CV% (std dev / mean*100). For details see worksheet “CV%” in file QF2011-27_CHL-*.xls. Phaeopigment data are provided for information only and no quality flags are assigned to them. Oxygen samples were analyzed on an automated Winkler titration system (Brinkmann Dosimat model 765 and a PC950 Colorimeter controlled by AutoOxy software V3.4) with modifications based on Carpenter (1965) and adhering to WOCE protocols (Culberson 1991). All samples were analyzed at sea. For details including a duplicate analysis, see document QF2011-27oxy*.xls. Salinity samples were collected in 200 mL type ll glass bottles with plastic inserts and screw caps supplied by Ocean Scientific Internation Limited. They were analyzed in a temperature-controlled lab on a Guildline 8400B Salinometer (S/N 68572) standardized with IAPSO standard seawater within 2 months of collection. Full details are in file QF2011-27sal*.xls. Nutrient samples were collected in plastic tubes. Most samples were analyzed fresh at sea. A few loop samples were analyzed frozen at IOS. An Astoria analyzer was used following methods described in Barwell-Clarke and Whitney (1996). File "QF 2011-27nuts*.xls" includes the raw data and a precision study. The minimum detectable level for DMS is 0.10 nM, so “0” values should be interpreted as <0.10. For details on the collection and analysis of the DMS data see file 2011-27 DMS Report.doc. For the data see DMS 2011-27 summary.xls and for the precision study see "std dev of pairs 2011-27.xls". References: 1. Barwell-Clarke, J. and Whitney, F. 1996. Institute of Ocean Sciences Nutrient Methods and Analysis. Canadian Technical Report of Hydrography and Ocean Sciences, No. 182, 43 pp. 2. Carpenter, J.H. 1965. The Chesapeake Bay Institute Technique for the Winkler Dissolved Oxygen Method. Limmnol. & Oceanogr., 10: 141-143. 3. Culberson, C.H. 1991. Dissolved oxygen. WOCE Hydrographic Programme Operations and Methods (July 1991). 15pp. 4. Holm-Hansen, O., Lorenzen, C.J., Holmes, R.W., and Strickland J.D.H. 1965. Fluorometric Determination of Chlorophyll. J.du Cons. Intl. Pour l’Epl. De la Mer. 30:3-15. * For PDF versions of these papers see folder \\Cruise_Data\DOCUMENTS\Analysis Reference Papers Data Processing Notes: ---------------------- Transmissivity, PAR and SBE Fluorescence data are nominal and unedited. For details on how the transmissivity calibration parameters were calculated see the document in folder "\cruise_data\documents\transmissivity". SBE DO calibration was done using the method described in the SeaBird Application NOte #64-2. For further processing details see the processing report 2011-27-proc.doc. July 2013: A correction has been applied to Nitrate_plus_Nitrite and Phosphate data from deep-water cruises analyzed at IOS between 2009 and 2012. For details see the following report: Corrections to Nitrate and Phosphate for Deep-Water Cruises from 2009 to 2012.pdf which is stored in folder: \\Cruise_Data\DOCUMENTS\Analysis Reference Papers *CALIBRATION $TABLE: CORRECTED CHANNELS !Name Units Fmla Pad Coefficients !------------------------------ -------- ---- ------ ------------ Fluorescence:Wetlabs:ECO-AFL mg/m^3 10 -99 () (0.91E-01 1) Oxygen:Dissolved:SBE mL/L 10 -99 () (-0.259E-01 1.0027) Nitrate_plus_Nitrite umol/L 10 -99 () (0.1709 0.9812) Phosphate umol/L 10 -99 () (0.453E-01 1.0115) $END !1- 2- --3--- ---4---- --5-- ---6--- ---7---- --8--- --9-- -10- -11- ---12--- ---13--- 14 ---15-- --16- 17 --18- 19 --20- 21 --22-- 23 !Bo Bo Pressu Temperat Trans Fluores Salinity Oxygen Oxyge Numb Samp Temperat Salinity Fl Oxygen: Oxyge Fl Nitra Fl Silic Fl Phosph Fl !tt tt re ure: missi cence: :T1:C1 : n: er_o le_ ure:Draw :Bottle ag Dissolv n: ag te_ ag ate ag ate ag !~u ~u Secondar vity URU: Dissol Disso ~bin Numb ~o ed Disso ~o plus_ ~t ~i ~p !mb en y Wetlabs ved: lved: _rec er tt lved lv Nitri ri ca ha !er ce SBE SBE ords le ed te te te te !-- -- ------ -------- ----- ------- -------- ------ ----- ---- ---- -------- -------- -- ------- ----- -- ----- -- ----- -- ------ -- *END OF HEADER 19 19 5.3 16.3583 55.6 0.264 32.1848 5.86 255.8 241 80 16.3000 32.1857 0 5.857 255.5 0 0.2 0 2.5 0 0.33 0 18 18 10.0 16.3249 55.6 0.274 32.1829 5.85 255.2 241 79 16.0000 -99.0000 0 5.872 256.1 0 0.2 0 2.5 0 0.33 0 17 17 24.7 14.9615 49.3 0.860 32.2530 6.30 274.5 241 78 14.6000 -99.0000 0 6.389 278.6 0 0.2 0 3.2 0 0.36 0 16 16 50.1 9.3469 59.7 1.536 32.5179 6.65 289.7 241 77 9.7000 -99.0000 0 6.642 289.3 0 3.8 0 6.4 0 0.73 0 15 15 76.1 8.0911 64.0 0.497 32.6574 6.35 276.3 241 76 8.7000 -99.0000 0 6.350 276.5 6 8.2 0 7.2 0 0.99 0 14 14 100.9 7.6913 65.3 0.108 33.0785 5.05 219.9 241 75 8.3000 -99.0000 0 5.010 218.1 0 17.2 0 20.0 0 1.51 0 13 13 125.4 7.7552 65.3 0.063 33.5346 3.68 160.0 241 74 8.3000 -99.0000 0 3.741 162.8 0 24.5 0 29.4 0 1.94 0 12 12 150.4 7.4103 65.3 0.056 33.7571 3.35 145.6 241 73 8.0000 -99.0000 0 3.350 145.7 0 27.6 0 34.9 0 2.08 0 11 11 175.1 7.1273 65.2 0.061 33.8455 3.12 135.6 241 72 8.2000 -99.0000 0 -99.000 -99.0 5 -99.0 5 -99.0 5 -99.00 5 10 10 200.1 6.8383 65.1 0.061 33.8883 2.89 125.8 241 71 7.5000 -99.0000 0 2.885 125.5 0 30.5 0 43.5 0 2.23 0 9 9 250.6 6.4057 65.3 0.055 33.9250 2.38 103.4 241 70 -99.0000 -99.0000 0 -99.000 -99.0 9 -99.0 9 -99.0 9 -99.00 9 8 8 301.3 5.9542 65.4 0.055 33.9553 1.85 80.3 241 69 6.8000 -99.0000 0 1.858 80.8 0 36.1 0 60.6 0 2.64 0 7 7 400.4 5.3629 65.6 0.032 34.0220 1.09 47.3 241 68 6.4000 -99.0000 0 1.093 47.5 0 39.9 6 75.3 6 2.96 6 6 6 601.4 4.6668 65.9 0.041 34.1785 0.38 16.5 241 67 5.9000 34.1760 0 0.408 17.7 0 43.0 0 96.1 0 3.24 0 5 5 800.5 4.1429 65.9 0.053 34.3017 0.22 9.6 241 66 -99.0000 -99.0000 0 -99.000 -99.0 9 -99.0 9 -99.0 9 -99.00 9 4 4 1001.1 3.6227 65.9 0.038 34.3887 0.26 11.1 241 65 4.8000 -99.0000 0 0.245 10.6 0 44.4 0 126.5 0 3.36 0 2 2 1250.6 3.0638 65.1 0.051 34.4635 0.43 18.5 241 63 4.2000 34.4631 0 0.421 18.3 0 44.3 0 141.1 0 3.32 0 3 3 1250.7 3.0650 65.1 0.038 34.4634 0.42 18.4 241 64 4.2000 -99.0000 0 0.410 17.8 0 44.1 0 141.7 0 3.32 0 1 1 1315.0 2.8191 64.5 0.032 34.4911 0.54 23.3 241 62 4.0000 -99.0000 0 0.551 23.9 0 44.2 0 148.3 0 3.29 0