*2014/11/20 09:57:49.94 *IOS HEADER VERSION 1.10 2011/10/26 2011/10/26 *FILE START TIME : UTC 2011/08/17 20:54:22.000 TIME INCREMENT : 0 0 0 0.416667E-01 0 ! (day hr min sec ms) NUMBER OF RECORDS : 11 DATA DESCRIPTION : Bottle:Rosette:Up:Stop + CTD:Up FILE TYPE : ASCII CRC : CAE6BA92 NUMBER OF CHANNELS : 22 $TABLE: CHANNELS ! No Name Units Minimum Maximum !--- --------------------------- --------------- -------------- -------------- 1 Bottle_Number n/a 1 11 2 Bottle:Firing_Sequence n/a 1 11 3 Pressure decibar 4.8 215.5 4 Temperature:Secondary 'deg C (ITS90)' 8.7565 14.5504 5 Transmissivity %/metre 36.9 60.5 6 Fluorescence:URU:Wetlabs mg/m^3 0.138 1.325 7 PAR uE/m^2/sec 0 369.4 8 Salinity:T1:C1 PSS-78 27.896 31.2351 9 Oxygen:Dissolved:SBE mL/L 0.7E-01 5.72 10 Oxygen:Dissolved:SBE umol/kg 3.1 250.2 11 Number_of_bin_records n/a 241 241 12 Sample_Number n/a 1 11 13 Temperature:Draw 'deg C (ITS90)' 9.1 13.7 14 Oxygen:Dissolved mL/L 0 5.078 15 Oxygen:Dissolved umol/kg 0 222.1 16 Flag:Oxygen:Dissolved n/a 17 Nitrate_plus_Nitrite umol/L 11.35658 27.54638 18 Flag:Nitrate_plus_Nitrite n/a 19 Silicate umol/L 32.4 119 20 Flag:Silicate n/a 21 Phosphate umol/L 1.36025 6.346945 22 Flag:Phosphate n/a $END $TABLE: CHANNEL DETAIL ! No Pad Start Width Format Type Decimal_Places !--- ---- ----- ----- ------ ---- -------------- 1 -99 ' ' 3 I I 0 2 -99 ' ' 3 I I 0 3 -99 ' ' 7 F ' ' 1 4 -99 ' ' 9 F ' ' 4 5 -99 ' ' 6 F ' ' 1 6 -99 ' ' 8 F ' ' 3 7 -99 ' ' 7 F ' ' 1 8 -99 ' ' 9 F ' ' 4 9 -99 ' ' 7 F ' ' 2 10 -99 ' ' 6 F ' ' 1 11 ' ' ' ' 5 I I 0 12 -99 ' ' 5 I I 0 13 -99 ' ' 9 F R4 4 14 -99 ' ' 8 F R4 3 15 -99 ' ' 6 F ' ' 1 16 0 ' ' 3 NQ C ' ' 17 -99 ' ' 6 F R4 1 18 0 ' ' 3 NQ C ' ' 19 -99 ' ' 6 F R4 1 20 0 ' ' 3 NQ C ' ' 21 -99 ' ' 7 F R4 2 22 0 ' ' 3 NQ C ' ' $END $REMARKS Flag channels initialized with zeros. Non-zero values have the following significance: -------------------------------------------------------------------------------------- 1 = Sample for this measurement was drawn from water bottle but not analyzed (not normally used). 2 = Acceptable measurement (not normally used). 3 = Questionable measurement (no problem observed in sampling or analysis, but value is not trusted, nonetheless; includes outlyers). 4 = Bad measurement (known problem with sampling or analysis, but not serious enough to completely discard the value). 5 = Not reported (lost sample; unredeemably bad measurement). 6 = Mean of replicate measurements. 7 = Manual chromatographic peak measurement. 8 = Irregular digital chromatographic peak integration. 9 = Sample not drawn for this measurement from this bottle (not normally used). -------------------------------------------------------------------------------------- $END *ADMINISTRATION MISSION : 2011-27 AGENCY : IOS, Ocean Sciences Division, Sidney, B.C. COUNTRY : Canada PROJECT : Line P SCIENTIST : Robert M. PLATFORM : John P. Tully *LOCATION GEOGRAPHIC AREA : North-East Pacific STATION : SI03 EVENT NUMBER : 1 LATITUDE : 48 35.63000 N ! (deg min) LONGITUDE : 123 30.02000 W ! (deg min) WATER DEPTH : 225 ALTIMETER (M) : 9.4 ! custom item $REMARKS Altimeter value is distance from bottom and is calculated as the median of the deepest 2 metres of data. $END *INSTRUMENT TYPE : Sea-Bird CTD MODEL : SBE-911plus SERIAL NUMBER : 0550 LOCATION : Mid-ship ! custom item $REMARKS SOFTWARE VERSION SEASAVE V 7.21B $END *HISTORY $TABLE: PROGRAMS ! Name Vers Date Time Recs In Recs Out ! ------------------------ ------ ---------- -------- --------- --------- SBE_IOS 3.1 2012/02/03 13:04:19 3389 3389 CLEAN 5.0.4 2012/02/03 13:05:09 ? ? ADDSAMP 3.5 2012/02/03 13:12:41 3389 3389 BINAVE 4.1.1 2012/02/03 13:13:23 3389 24 MERGE 3.4 2012/02/03 13:20:09 24 24 CLEAN 5.0.4 2012/02/03 13:23:00 11 11 CALIB 11.7 2012/02/14 13:36:20 11 11 SORT 3.5 2012/02/14 15:58:35 11 11 REMOVECH 8.1.1 2012/02/14 16:00:14 11 11 CHGUNITS 3.0 2012/02/14 16:08:17 11 11 CHGUNITS 3.0 2012/02/14 16:08:33 11 11 REORDER 1.3 2012/02/14 16:10:09 ? ? HDREDIT2 2.5.1 2012/03/28 13:51:18 ? ? CALIB 11.7 2013/06/04 13:16:49 11 11 HDREDIT2 2.6 2013/07/08 08:51:37 ? ? CHANGE_CTD_CHANNEL_NAMES 1.0 2013/12/16 15:36:35 11 11 CHANGE_FLAGS 2.0 2014/11/20 09:57:49 11 11 $END $REMARKS -CLEAN functions: 2012/02/03 13:05:09 Set event to last 4 characters of file name -The following ADDSAMP parameters were used: Sample Number Lookup File: P:\Cruise_Data_Processing\2011-27\Processing\hydro\addsamp.csv Bottle Channel Name: Bottle_Number -The following BINAVE parameters were used: Bin channel = Bottle_Number Averaging interval = 1.00 Minimum bin value = 0.000 Average value was used Interpolated values were NOT used for empty bins Channel 'NUMBER_OF_BIN_RECORDS' was added to file. -The following MERGE parameters were used: 2012/02/03 13:20:09 Merge Channel: Bottle_Number Merge Scheme Used: Add Secondary to Primary Overlap Scheme Used: Keep Primary Primary Channels to Include: ALL Secondary Channels to Include: Event_Number, Salinity:Bottle, Flag:Salinity:Bottle, Chlorophyll:Extracted, Flag:Chlorophyll:Extracted, Phaeo-Pigment:Extracted, Oxygen:Dissolved, Flag:Oxygen:Dissolved, Temperature:Draw, Nitrate_plus_Nitrite, Flag:Nitrate_plus_Nitrite, Silicate, Flag:Silicate, Phosphate, Flag:Phosphate, Dimethyl_Sulphide, Flag:Dimethyl_Sulphide Primary file : P:\Cruise_Data_Processing\2011-27\Processing\hydro\2011-27-0001.samavg Secondary file: P:\Cruise_Data_Processing\2011-27\Processing\hydro\2011-27-0001.mrgcln1s Comments from secondary file: P:\Cruise_Data_Processing\2011-27\Processing\hydro\2011-27-0001.mrgcln1s ------------------------------------------------------------------------ -SORT parameters: 2012/02/02 16:58:27 Sorted in ascending order of channel Bottle_Number -CLEAN functions: 2012/02/03 13:23:00 Reset #RECS, MIN & MAX values in header. Remove Sea-Bird comments from the header. -CALIB parameters: 2012/02/14 13:36:20 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = P:\Cruise_Data_Processing\2011-27\Processing\doc\2011-27-recal.ccf Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 9 Fluorescence:Wetlabs:ECO-AFL mg/m^3 10 0.9100000E-01 0.1000000E+01 18 Oxygen:Dissolved:SBE mL/L 10 -0.2590000E-01 0.1002700E+01 -SORT parameters: 2012/02/14 15:58:35 Sorted in ascending order of channel Pressure [dbars] -REMOVECH 2012/02/14 16:00:14 The following CHANNEL(S) were removed: Scan_Number Temperature:Primary [deg C (ITS90)] Conductivity:Primary [S/m] Conductivity:Secondary [S/m] Oxygen:Voltage:SBE [volts] Altimeter [metres] Status:Pump Descent_Rate [m/s] Salinity:T0:C0 [PSS-78] Flag -CHANGE units: 'Oxygen:Dissolved:SBE' changed from mL/L to umol/kg -CHANGE units: 'Oxygen:Dissolved' changed from mL/L to umol/kg -HEADER EDITS: 2012/03/28 13:51:18 Applied edit header: P:\Cruise_Data_Processing\2011-27\Processing\doc\2011-27-bot-hdr.txt Channel 2: Bottle:Firing_Sequence [n/a] Name: Bottle_Number ==> Bottle:Firing_Sequence Channel 1: Bottle_Number [n/a] Name: Bottle:Position ==> Bottle_Number Channel 3: Pressure [decibar] Units: dbars ==> decibar Format: F10.3 ==> F7.1 Channel 6: Fluorescence:URU:Wetlabs [mg/m^3] Name: Fluorescence:Wetlabs:ECO-AFL ==> Fluorescence:URU:Wetlabs Channel 7: PAR [uE/m^2/sec] Format: F11.3 ==> F7.1 Channel 8: Salinity:Practical:T1:C1 [PSS-78] Name: Salinity:T1:C1 ==> Salinity:Practical:T1:C1 Channel 9: Oxygen:Dissolved:SBE [mL/L] Format: F8.3 ==> F7.2 Channel 10: Oxygen:Dissolved:SBE [umol/kg] Format: F6.2 ==> F6.1 Channel 14: Oxygen:Dissolved [mL/L] Units: ==> mL/L Channel 15: Oxygen:Dissolved [umol/kg] Format: F6.2 ==> F6.1 Channel 16: Flag:Oxygen:Dissolved [n/a] Units: ==> n/a Channel 17: Nitrate_plus_Nitrite [umol/L] Units: ==> umol/L Channel 18: Flag:Nitrate_plus_Nitrite [n/a] Units: ==> n/a Channel 19: Silicate [umol/L] Units: ==> umol/L Format: F7.2 ==> F6.1 Channel 20: Flag:Silicate [n/a] Units: ==> n/a Channel 21: Phosphate [umol/L] Units: ==> umol/L Channel 22: Flag:Phosphate [n/a] Units: ==> n/a -CALIB parameters: 2013/06/04 13:16:49 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = C:\DATA\Nutrients\doc\Nutrients-recal1.ccf Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 17 Nitrate_plus_Nitrite umol/L 10 0.1709000E+00 0.9812000E+00 21 Phosphate umol/L 10 0.4530000E-01 0.1011500E+01 -HEADER EDITS: 2013/07/08 08:51:37 Applied edit header: C:\DATA\Nutrients\doc\headedit-correction.txt $END *COMMENTS Comments from secondary file: P:\Cruise_Data_Processing\2011-27\Processing\hydro\2011-27-0001.mrgcln1s ------------------------------------------------------------------------ Comments from secondary file: P:\Cruise_Data_Processing\2011-27\Processing\hydro\2011-27-0001.oxy ------------------------------------------------------------------- Sample_Number 1: OXY: H2S. Anoxic Sample_Number 2: OXY: H2S. Anoxic Sample_Number 3: OXY: H2S. Anoxic Sample_Number 4: OXY: H2S. Titration curve ok. Comments from secondary file: P:\Cruise_Data_Processing\2011-27\Processing\hydro\2011-27-0001.nut ------------------------------------------------------------------- Sample_Number 1: NUTS: H2S, no nitrate analyzed Sample_Number 2: NUTS: H2S, no nitrate analyzed Sample_Number 3: NUTS: H2S, no nitrate analyzed Sample_Number 4: NUTS: H2S, no nitrate analyzed Analysis methods: ----------------- Chlorophyll samples were filtered onto 25mm GF/F filters and stored in glass scintillation vials at -20C prior to analysis. Samples were extracted in 90% acetone at -20C for 24 hours and analyzed on a Turner 10AU fluorometer which is calibrated annually with commercially pure chlorophyll a (Sigma). Fluorescence readings taken before and after acidification were used to calculate chlorophyll and phaeopigment concentrations (Holm-Hansen et al 1965). Chlorophyll samples were analyzed on board ship in a controlled temperature lab. The average of two samples is reported. Variability is assessed as the CV% (std dev / mean*100). For details see worksheet “CV%” in file QF2011-27_CHL-*.xls. Phaeopigment data are provided for information only and no quality flags are assigned to them. Oxygen samples were analyzed on an automated Winkler titration system (Brinkmann Dosimat model 765 and a PC950 Colorimeter controlled by AutoOxy software V3.4) with modifications based on Carpenter (1965) and adhering to WOCE protocols (Culberson 1991). All samples were analyzed at sea. For details including a duplicate analysis, see document QF2011-27oxy*.xls. Salinity samples were collected in 200 mL type ll glass bottles with plastic inserts and screw caps supplied by Ocean Scientific Internation Limited. They were analyzed in a temperature-controlled lab on a Guildline 8400B Salinometer (S/N 68572) standardized with IAPSO standard seawater within 2 months of collection. Full details are in file QF2011-27sal*.xls. Nutrient samples were collected in plastic tubes. Most samples were analyzed fresh at sea. A few loop samples were analyzed frozen at IOS. An Astoria analyzer was used following methods described in Barwell-Clarke and Whitney (1996). File "QF 2011-27nuts*.xls" includes the raw data and a precision study. The minimum detectable level for DMS is 0.10 nM, so “0” values should be interpreted as <0.10. For details on the collection and analysis of the DMS data see file 2011-27 DMS Report.doc. For the data see DMS 2011-27 summary.xls and for the precision study see "std dev of pairs 2011-27.xls". References: 1. Barwell-Clarke, J. and Whitney, F. 1996. Institute of Ocean Sciences Nutrient Methods and Analysis. Canadian Technical Report of Hydrography and Ocean Sciences, No. 182, 43 pp. 2. Carpenter, J.H. 1965. The Chesapeake Bay Institute Technique for the Winkler Dissolved Oxygen Method. Limmnol. & Oceanogr., 10: 141-143. 3. Culberson, C.H. 1991. Dissolved oxygen. WOCE Hydrographic Programme Operations and Methods (July 1991). 15pp. 4. Holm-Hansen, O., Lorenzen, C.J., Holmes, R.W., and Strickland J.D.H. 1965. Fluorometric Determination of Chlorophyll. J.du Cons. Intl. Pour l’Epl. De la Mer. 30:3-15. * For PDF versions of these papers see folder \\Cruise_Data\DOCUMENTS\Analysis Reference Papers Data Processing Notes: ---------------------- Transmissivity, PAR and SBE Fluorescence data are nominal and unedited. For details on how the transmissivity calibration parameters were calculated see the document in folder "\cruise_data\documents\transmissivity". SBE DO calibration was done using the method described in the SeaBird Application NOte #64-2. For further processing details see the processing report 2011-27-proc.doc. July 2013: A correction has been applied to Nitrate_plus_Nitrite and Phosphate data from deep-water cruises analyzed at IOS between 2009 and 2012. For details see the following report: Corrections to Nitrate and Phosphate for Deep-Water Cruises from 2009 to 2012.pdf which is stored in folder: \\Cruise_Data\DOCUMENTS\Analysis Reference Papers *CALIBRATION $TABLE: CORRECTED CHANNELS !Name Units Fmla Pad Coefficients !------------------------------ -------- ---- ------ ------------ Fluorescence:Wetlabs:ECO-AFL mg/m^3 10 -99 () (0.91E-01 1) Oxygen:Dissolved:SBE mL/L 10 -99 () (-0.259E-01 1.0027) Nitrate_plus_Nitrite umol/L 10 -99 () (0.1709 0.9812) Phosphate umol/L 10 -99 () (0.453E-01 1.0115) $END !1- 2- --3--- ---4---- --5-- ---6--- --7--- ---8---- --9--- --10- -11- -12- ---13--- ---14-- --15- 16 --17- 18 --19- 20 --21-- 22 !Bo Bo Pressu Temperat Trans Fluores PAR Salinity Oxygen Oxyge Numb Samp Temperat Oxygen: Oxyge Fl Nitra Fl Silic Fl Phosph Fl !tt tt re ure: missi cence: :T1:C1 : n: er_o le_ ure:Draw Dissolv n: ag te_ ag ate ag ate ag !~u ~u Secondar vity URU: Dissol Disso ~bin Numb ed Disso ~o plus_ ~t ~i ~p !mb en y Wetlabs ved: lved: _rec er lved lv Nitri ri ca ha !er ce SBE SBE ords ed te te te te !-- -- ------ -------- ----- ------- ------ -------- ------ ----- ---- ---- -------- ------- ----- -- ----- -- ----- -- ------ -- *END OF HEADER 11 11 4.8 14.5504 50.1 1.325 369.4 27.8960 5.72 250.2 241 11 13.7000 5.078 222.1 0 11.4 0 32.4 0 1.36 0 10 10 10.6 12.1021 48.8 0.952 91.0 28.2498 4.29 187.6 241 10 11.9000 4.122 180.2 0 16.9 0 40.2 0 1.87 0 9 9 25.4 10.0147 60.5 0.199 4.4 29.0828 3.47 151.4 241 9 10.0000 3.457 151.0 0 23.5 0 37.8 0 2.27 0 8 8 50.3 9.0963 59.9 0.183 0.1 29.6556 2.97 129.8 241 8 9.3000 2.995 130.7 0 27.5 0 45.7 0 2.63 0 7 7 74.9 8.7565 53.2 0.150 0.0 30.5809 1.22 53.3 241 7 9.1000 1.171 51.1 0 25.6 0 73.3 0 3.68 0 6 6 100.6 8.8938 49.1 0.144 0.0 30.9284 0.92 39.9 241 6 9.2000 0.941 41.0 6 21.6 0 78.8 0 3.94 0 5 5 125.3 9.0253 45.7 0.138 0.0 31.0869 0.63 27.3 241 5 9.3000 0.631 27.5 0 16.3 0 87.7 0 4.37 0 4 4 150.5 9.1747 51.6 0.154 0.0 31.1835 0.07 3.1 241 4 9.4000 0.070 3.1 0 -99.0 1 107.0 6 5.26 6 3 3 175.0 9.2491 36.9 0.172 0.0 31.2216 0.08 3.3 241 3 9.5000 0.000 0.0 0 -99.0 1 118.4 0 6.26 0 2 2 200.0 9.2508 40.1 0.183 0.0 31.2349 0.08 3.7 241 2 9.4000 0.000 0.0 0 -99.0 1 119.0 0 6.35 0 1 1 215.5 9.2111 39.5 0.184 0.0 31.2351 0.10 4.3 241 1 9.4000 0.000 0.0 0 -99.0 1 117.1 0 6.23 0