*2014/11/20 09:57:37.26 *IOS HEADER VERSION 1.10 2011/10/26 2011/10/26 *FILE START TIME : UTC 2011/05/27 11:14:54.000 TIME INCREMENT : 0 0 0 0.416667E-01 0 ! (day hr min sec ms) NUMBER OF RECORDS : 11 DATA DESCRIPTION : Bottle:Rosette:Up:Stop + CTD:Up FILE TYPE : ASCII CRC : 42C8412C NUMBER OF CHANNELS : 28 $TABLE: CHANNELS ! No Name Units Minimum Maximum !--- ---------------------------- --------------- -------------- -------------- 1 Bottle_Number n/a 1 11 2 Bottle:Firing_Sequence n/a 1 11 3 Pressure decibar 4.3 191.7 4 Temperature:Secondary 'deg C (ITS90)' 6.4556 11.5363 5 Transmissivity %/metre 55.1 62.3 6 Fluorescence:URU:Wetlabs mg/m^3 0.6E-02 1.795 7 Salinity:T1:C1 PSS-78 31.5181 33.9732 8 Oxygen:Dissolved:SBE mL/L 1.65 6.92 9 Oxygen:Dissolved:SBE umol/kg 71.7 301.6 10 Number_of_bin_records n/a 241 241 11 Sample_Number n/a 145 155 12 Temperature:Draw 'deg C (ITS90)' n/a n/a 13 Salinity:Bottle PSS-78 33.971 33.971 14 Flag:Salinity:Bottle n/a 15 Chlorophyll:Extracted mg/m^3 0.33 0.39 16 Flag:Chlorophyll:Extracted n/a 17 Phaeo-Pigment:Extracted mg/m^3 0.11 0.15 18 Oxygen:Dissolved mL/L 1.602 6.848 19 Oxygen:Dissolved umol/kg n/a n/a 20 Flag:Oxygen:Dissolved n/a 21 Nitrate_plus_Nitrite umol/L 0.1709 36.37718 22 Flag:Nitrate_plus_Nitrite n/a 23 Silicate umol/L 4.6 57.4 24 Flag:Silicate n/a 25 Phosphate umol/L 0.338635 2.6752 26 Flag:Phosphate n/a 27 Ammonium umol/L 0.6E-01 0.8E-01 28 Flag:Ammonium n/a $END $TABLE: CHANNEL DETAIL ! No Pad Start Width Format Type Decimal_Places !--- ---- ----- ----- ------ ---- -------------- 1 -99 ' ' 3 I I 0 2 -99 ' ' 3 I I 0 3 -99 ' ' 7 F ' ' 1 4 -99 ' ' 9 F ' ' 4 5 -99 ' ' 6 F ' ' 1 6 -99 ' ' 8 F ' ' 3 7 -99 ' ' 9 F ' ' 4 8 -99 ' ' 7 F ' ' 2 9 -99 ' ' 6 F ' ' 1 10 ' ' ' ' 5 I I 0 11 -99 ' ' 5 I I ' ' 12 -99 ' ' 9 F R4 4 13 -99 ' ' 9 F R4 4 14 0 ' ' 3 NQ C ' ' 15 -99 ' ' ' ' F7.2 R4 ' ' 16 0 ' ' 3 NQ C ' ' 17 -99 ' ' ' ' F7.2 R4 ' ' 18 -99 ' ' 8 F R4 3 19 -99 ' ' 6 F ' ' 1 20 0 ' ' 3 NQ C ' ' 21 -99 ' ' 6 F R4 1 22 0 ' ' 3 NQ C ' ' 23 -99 ' ' 6 F R4 1 24 0 ' ' 3 NQ C ' ' 25 -99 ' ' 7 F R4 2 26 0 ' ' 3 NQ C ' ' 27 -99 ' ' 7 F R4 2 28 0 ' ' 3 NQ C ' ' $END $REMARKS Flag channels initialized with zeros. Non-zero values have the following significance: -------------------------------------------------------------------------------------- 1 = Sample for this measurement was drawn from water bottle but not analyzed (not normally used). 2 = Acceptable measurement (not normally used). 3 = Questionable measurement (no problem observed in sampling or analysis, but value is not trusted, nonetheless; includes outlyers). 4 = Bad measurement (known problem with sampling or analysis, but not serious enough to completely discard the value). 5 = Not reported (lost sample; unredeemably bad measurement). 6 = Mean of replicate measurements. 7 = Manual chromatographic peak measurement. 8 = Irregular digital chromatographic peak integration. 9 = Sample not drawn for this measurement from this bottle (not normally used). -------------------------------------------------------------------------------------- $END *ADMINISTRATION MISSION : 2011-16 AGENCY : IOS, Ocean Sciences Division, Sidney, B.C. COUNTRY : Canada PROJECT : La Perouse SCIENTIST : Yelland D. PLATFORM : John P. Tully *LOCATION GEOGRAPHIC AREA : WCVI STATION : LC08 EVENT NUMBER : 44 LATITUDE : 48 29.46000 N ! (deg min) LONGITUDE : 126 7.13000 W ! (deg min) WATER DEPTH : 198 ALTIMETER (M) : 7.08 ! custom item $REMARKS Altimeter value is distance from bottom and is calculated as the median of the deepest 2 metres of data. $END *INSTRUMENT TYPE : Sea-Bird CTD MODEL : SBE-911plus SERIAL NUMBER : 0550 LOCATION : Mid-ship ! custom item $REMARKS SOFTWARE VERSION SEASAVE V 7.21B $END *HISTORY $TABLE: PROGRAMS ! Name Vers Date Time Recs In Recs Out ! ------------------------ ------ ---------- -------- --------- --------- SBE_IOS 3.1 2011/10/13 12:36:19 2651 2651 CLEAN 5.0.3 2011/10/13 12:38:13 ? ? ADDSAMP 3.5 2011/10/13 12:40:18 2651 2651 BINAVE 4.1.1 2011/10/13 12:40:53 2651 11 MERGE 3.4 2011/10/14 16:01:53 11 11 CLEAN 5.0.3 2011/10/14 17:24:07 11 11 SORT 3.5 2011/10/24 15:12:17 11 11 REMOVECH 8.0 2011/10/24 15:17:50 11 11 CHGUNITS 3.0 2011/10/24 15:31:15 11 11 CHGUNITS 3.0 2011/10/24 15:33:33 11 11 REORDER 1.3 2011/10/25 11:16:21 ? ? HDREDIT2 2.5.1 2011/10/25 11:16:55 ? ? CALIB 11.7 2013/06/04 13:15:59 11 11 HDREDIT2 2.6 2013/07/08 08:51:07 ? ? CHANGE_CTD_CHANNEL_NAMES 1.0 2013/12/16 15:35:45 11 11 CHANGE_FLAGS 2.0 2014/11/20 09:57:37 11 11 $END $REMARKS -CLEAN functions: 2011/10/13 12:38:02 20 Set event to last 4 characters of file name -The following ADDSAMP parameters were used: Sample Number Lookup File: P:\Cruise_Data_Processing\2011-16\Processing\hydro\addsamp.csv Bottle Channel Name: Bottle_Number -The following BINAVE parameters were used: Bin channel = Bottle_Number Averaging interval = 1.00 Minimum bin value = 0.000 Average value was used Interpolated values were NOT used for empty bins Channel 'NUMBER_OF_BIN_RECORDS' was added to file. -The following MERGE parameters were used: 2011/10/14 16:01:52 2011/10/14 16:01:52 2011/10/14 16:01: Merge Channel: Bottle_Number Merge Scheme Used: Add Secondary to Primary Overlap Scheme Used: Keep Primary Primary Channels to Include: ALL Secondary Channels to Include: Salinity:Bottle, Flag:Salinity:Bottle, Chlorophyll:Extracted, Flag:Chlorophyll:Extracted, Phaeo-Pigment:Extracted, Oxygen:Dissolved, Flag:Oxygen:Dissolved, Temperature:Draw, Nitrate_plus_Nitrite, Flag:Nitrate_plus_Nitrite, Silicate, Flag:Silicate, Phosphate, Flag:Phosphate, Ammonium, Flag:Ammonium Primary file : P:\Cruise_Data_Processing\2011-16\Processing\hydro\2011-16-0044.samavg Secondary file: P:\Cruise_Data_Processing\2011-16\Processing\hydro\2011-16-0044.mrgcln1s Comments from secondary file: P:\Cruise_Data_Processing\2011-16\Processing\hydro\2011-16-0044.mrgcln1s ------------------------------------------------------------------------ -CLEAN functions: 2011/10/14 16:01:37 20 Reduce header to sections: FIL ADM LOC DEP REC INS HIS RAW CAL COM Remarks removed from kept sections. -SORT parameters: 2011/10/14 16:01:43 Sorted in ascending order of channel Bottle_Number -CLEAN functions: 2011/10/14 17:24:06 20 Reset #RECS, MIN & MAX values in header. Remove Sea-Bird comments from the header. -SORT parameters: 2011/10/24 15:12:17 Sorted in ascending order of channel Pressure [dbars] -REMOVECH 2011/10/24 15:17:50 The following CHANNEL(S) were removed: Scan_Number Temperature:Primary [deg C (ITS90)] Conductivity:Primary [S/m] Conductivity:Secondary [S/m] Oxygen:Voltage:SBE [volts] PAR [uE/m^2/sec] Altimeter [metres] Status:Pump Descent_Rate [m/s] Salinity:T0:C0 [PSS-78] Flag -CHANGE units: 'Oxygen:Dissolved:SBE [mL/L]' changed from mL/L to umol/kg -CHANGE units: 'Oxygen:Dissolved' changed from mL/L to umol/kg -HEADER EDITS: 2011/10/25 11:16:55 Applied edit header: P:\Cruise_Data_Processing\2011-16\Processing\doc\2011-16-bot-hdr.txt Channel 2: Bottle:Firing_Sequence [n/a] Name: Bottle_Number ==> Bottle:Firing_Sequence Channel 3: Pressure [decibar] Units: dbars ==> decibar Format: F10.3 ==> F7.1 Channel 7: Salinity:Practical:T1:C1 [PSS-78] Name: Salinity:T1:C1 ==> Salinity:Practical:T1:C1 Channel 1: Bottle_Number [n/a] Name: Bottle:Position ==> Bottle_Number Channel 1: Bottle_Number [n/a] Name: Bottle:Position ==> Bottle_Number Channel 8: Oxygen:Dissolved:SBE [mL/L] Format: F8.3 ==> F7.2 Channel 18: Oxygen:Dissolved [mL/L] Units: ==> mL/L Channel 23: Silicate [umol/L] Format: F7.2 ==> F6.1 Channel 27: Ammonium [umol/L] Units: ==> umol/L Format: F8.4 ==> F7.2 Channel 9: Oxygen:Dissolved:SBE [umol/kg] Format: F6.2 ==> F6.1 Channel 19: Oxygen:Dissolved [umol/kg] Format: F6.2 ==> F6.1 Channel 6: Fluorescence:URU:Wetlabs [mg/m^3] Name: Fluorescence:Wetlabs:ECO-AFL ==> Fluorescence:URU:Wetlabs -CALIB parameters: 2013/06/04 13:15:59 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = C:\DATA\Nutrients\doc\Nutrients-recal1.ccf Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 21 Nitrate_plus_Nitrite umol/L 10 0.1709000E+00 0.9812000E+00 25 Phosphate umol/L 10 0.4530000E-01 0.1011500E+01 -HEADER EDITS: 2013/07/08 08:51:07 Applied edit header: C:\DATA\Nutrients\doc\headedit-correction.txt $END *COMMENTS Comments from secondary file: P:\Cruise_Data_Processing\2011-16\Processing\hydro\2011-16-0044.mrgcln1s ------------------------------------------------------------------------ Comments from secondary file: P:\Cruise_Data_Processing\2011-16\Processing\hydro\2011-16-0044.oxy ------------------------------------------------------------------- Sample_Number 145-155: Oxy: Temp Gauge died Sample_Number 148: ALL: Mis-fire or Mis-sample - looks like all samples came from about 125db; Sample_Number 149: Oxy: Bubble in one of duplicates. Comments from secondary file: P:\Cruise_Data_Processing\2011-16\Processing\hydro\2011-16-0044.nut ------------------------------------------------------------------- Sample_Number 145: Nuts: mistrip? mis-sampled? Sample_Number 146: Nuts: mistrip? mis-sampled? Sample_Number 147: Nuts: mistrip? mis-sampled? Sample_Number 148: ALL: mistrip Comments from secondary file: P:\Cruise_Data_Processing\2011-16\Processing\hydro\2011-16-0044.NH4 ------------------------------------------------------------------- Sample_Number 153: NH4: dup rejected, assumed contaminated Sample_Number 154: NH4: dup not used, forgot to analyze Sample_Number 155: NH4: dup not used, forgot to analyze Analysis methods: ----------------- Chlorophyll samples were filtered onto 25mm GF/F filters and stored in glass scintillation vials at -20C prior to analysis. Samples were extracted in 90% acetone at -20C for 24 hours in the lab and analyzed on a Turner 10AU fluorometer which is calibrated annually with commercially pure chlorophyll a (Sigma). Fluorescence readings taken before and after acidification were used to calculate chlorophyll and phaeopigment concentrations (Holm-Hansen et al 1965). Chlorophyll samples were analyzed on board ship in a controlled temperature lab. The average of two samples is reported. Variability is assessed as the CV% (std dev / mean*100). For details see worksheet “CV%” in file 2011-16CHL*.xls. Phaeopigment data are provided for information only and no quality flags are assigned to them. Oxygen samples were analyzed on an automated Winkler titration system (Brinkmann Dosimat model 765 and a PC950 Colorimeter controlled by AutoOxy software V3.4) with modifications based on Carpenter (1965) and adhering to WOCE protocols (Culberson 1991). All samples were analyzed at sea. For details including a duplicate analysis, see document 2011-16oxy*.xls. Salinity samples were collected in glass bottles and analyzed on Guildline Autosal model 8400B, S/N 68572, at IOS. Salinometers are standardized with IAPSO standard seawater. Full results are in file 2011-16-sal*.xls. Nutrient samples were collected in plastic tubes. Most samples were stored frozen and later analysed at IOS. Deep Silicate samples (400m and deeper) were analyzed cool at IOS. An Astoria analyzer was used following methods described in Barwell-Clarke and Whitney (1996). File "QF 2011-16nuts*.xls" includes the raw data and a precision study. Ammonia samples were analysed fresh at sea using a TD700 fluorometer. For more information including details on precision see 2011-16_NH4.xls. References: 1. Barwell-Clarke, J. and Whitney, F. 1996. Institute of Ocean Sciences Nutrient Methods and Analysis. Canadian Technical Report of Hydrography and Ocean Sciences, No. 182, 43 pp. 2. Carpenter, J.H. 1965. The Chesapeake Bay Institute Technique for the Winkler Dissolved Oxygen Method. Limmnol. & Oceanogr., 10: 141-143. 3. Culberson, C.H. 1991. Dissolved oxygen. WOCE Hydrographic Programme Operations and Methods (July 1991). 15pp. 4. Holm-Hansen, O., Lorenzen, C.J., Holmes, R.W., and Strickland J.D.H. 1965. Fluorometric Determination of Chlorophyll. J.du Cons. Intl. Pour l’Epl. De la Mer. 30:3-15. * For PDF versions of these papers see folder \\Cruise_Data\DOCUMENTS\Analysis Reference Papers Data Processing Notes: ---------------------- Transmissivity, PAR and SBE Fluorescence data are nominal and unedited. For details on how the transmissivity calibration parameters were calculated see the document in folder "\cruise_data\documents\transmissivity". SBE DO calibration was done using the method described in the SeaBird Application NOte #64-2. For further processing details see the processing report 2011-01-proc.doc. July 2013: A correction has been applied to Nitrate_plus_Nitrite and Phosphate data from deep-water cruises analyzed at IOS between 2009 and 2012. For details see the following report: Corrections to Nitrate and Phosphate for Deep-Water Cruises from 2009 to 2012.pdf which is stored in folder: \\Cruise_Data\DOCUMENTS\Analysis Reference Papers *CALIBRATION $TABLE: CORRECTED CHANNELS ! Name Units Fmla Pad Coefficients ! ---------------------- -------- ---- ------ ------------ Nitrate_plus_Nitrite umol/L 10 -99 () (0.1709 0.9812) Phosphate umol/L 10 -99 () (0.453E-01 1.0115) $END !1- 2- --3--- ---4---- --5-- ---6--- ---7---- --8--- --9-- -10- -11- ---12--- ---13--- 14 --15-- 16 --17-- ---18-- --19- 20 --21- 22 --23- 24 --25-- 26 --27-- 28 !Bo Bo Pressu Temperat Trans Fluores Salinity Oxygen Oxyge Numb Samp Temperat Salinity Fl Chloro Fl Phaeo- Oxygen: Oxyge Fl Nitra Fl Silic Fl Phosph Fl Ammoni Fl !tt tt re ure: missi cence: :T1:C1 : n: er_o le_ ure:Draw :Bottle ag phyll: ag Pigmen Dissolv n: ag te_ ag ate ag ate ag um ag !~u ~u Secondar vity URU: Dissol Disso ~bin Numb ~o Extrac ~a t: ed Disso ~o plus_ ~t ~i ~p ~o !mb en y Wetlabs ved: lved: _rec er tt ted ct Extrac lved lv Nitri ri ca ha ni !er ce SBE SBE ords le ed ted ed te te te te um !-- -- ------ -------- ----- ------- -------- ------ ----- ---- ---- -------- -------- -- ------ -- ------ ------- ----- -- ----- -- ----- -- ------ -- ------ -- *END OF HEADER 11 11 4.3 11.5363 55.9 0.515 31.5181 6.60 287.6 241 155 -99.0000 -99.0000 0 0.33 6 0.11 6.581 -99.0 0 0.2 0 4.6 0 0.34 0 0.07 0 10 10 10.6 11.4910 56.0 0.542 31.5773 6.67 290.6 241 154 -99.0000 -99.0000 0 0.33 6 0.12 6.619 -99.0 0 0.2 0 4.8 0 0.34 0 0.06 0 9 9 20.5 10.6168 55.4 0.798 31.9120 6.92 301.6 241 153 -99.0000 -99.0000 0 0.39 6 0.15 6.848 -99.0 0 0.2 0 5.8 0 0.40 0 0.08 0 8 8 30.3 9.2034 55.1 1.795 32.2842 6.66 290.1 241 152 -99.0000 -99.0000 0 -99.00 0 -99.00 6.704 -99.0 0 3.2 6 8.7 6 0.67 6 -99.00 0 7 7 50.5 8.4415 60.3 0.799 32.5830 6.21 270.4 241 151 -99.0000 -99.0000 0 -99.00 0 -99.00 6.247 -99.0 0 7.9 0 8.1 0 0.93 0 -99.00 0 6 6 74.5 7.8624 61.7 0.184 33.0133 4.96 215.8 241 150 -99.0000 -99.0000 0 -99.00 0 -99.00 5.107 -99.0 0 16.2 0 17.9 0 1.40 0 -99.00 0 5 5 100.5 7.6795 62.3 0.028 33.4936 3.87 168.3 241 149 -99.0000 -99.0000 0 -99.00 0 -99.00 3.851 -99.0 0 24.9 0 29.2 0 1.90 0 -99.00 0 4 4 125.6 7.0691 59.5 0.006 33.8030 2.59 112.5 241 148 -99.0000 -99.0000 0 -99.00 0 -99.00 2.593 -99.0 0 31.2 0 43.7 0 2.30 0 -99.00 0 3 3 151.5 6.6873 56.2 0.019 33.9226 1.95 84.6 241 147 -99.0000 -99.0000 0 -99.00 0 -99.00 2.591 -99.0 3 31.3 0 43.8 0 2.34 0 -99.00 0 2 2 175.9 6.4583 56.4 0.011 33.9712 1.65 71.7 241 146 -99.0000 33.9710 0 -99.00 0 -99.00 1.611 -99.0 0 36.3 0 57.2 0 2.65 0 -99.00 0 1 1 191.7 6.4556 56.4 0.013 33.9732 1.66 72.2 241 145 -99.0000 -99.0000 0 -99.00 0 -99.00 1.602 -99.0 0 36.4 0 57.4 0 2.68 0 -99.00 0