*2014/11/20 09:57:01.61 *IOS HEADER VERSION 1.10 2011/10/26 2011/10/26 *FILE START TIME : UTC 2010/06/01 09:40:00.000 TIME INCREMENT : 0 0 0 0.416667E-01 0 ! (day hr min sec ms) NUMBER OF RECORDS : 6 DATA DESCRIPTION : Bottle:Rosette:Up:Stop + CTD:Up FILE TYPE : ASCII CRC : 3BCA884C NUMBER OF CHANNELS : 27 $TABLE: CHANNELS ! No Name Units Minimum Maximum !--- ------------------------------ --------------- -------------- -------------- 1 Sample_Number n/a 444 449 2 Pressure decibar 7 56.5 3 Temperature:Secondary 'deg C (ITS90)' 8.6606 10.2433 4 Transmissivity %/metre 52 58.6 5 Fluorescence:URU:Seapoint mg/m^3 0.181 0.538 6 PAR uE/m^2/sec 6.4 8 7 Oxygen:Dissolved:SBE mL/L 5.46 6.53 8 Oxygen:Dissolved:SBE umol/kg 237.9 284.6 9 Salinity:T1:C1 PSS-78 31.282 32.1184 10 Number_of_bin_records n/a 120 121 11 Bottle_Number n/a 1 6 12 Salinity:Bottle PSS-78 31.2748 32.1178 13 Flag:Salinity:Bottle n/a 14 Chlorophyll:Extracted mg/m^3 0.46 1.14 15 Flag:Chlorophyll:Extracted n/a 16 Phaeo-Pigment:Extracted mg/m^3 0.26 0.32 17 Flag:Phaeo-Pigment:Extracted n/a 18 Oxygen:Dissolved mL/L 5.634 6.743 19 Flag:Oxygen:Dissolved n/a 20 Nitrate_plus_Nitrite umol/L 2.72202 11.9453 21 Flag:Nitrate_plus_Nitrite n/a 22 Silicate umol/L 6 20.7 23 Flag:Silicate n/a 24 Phosphate umol/L 0.61174 1.27933 25 Flag:Phosphate n/a 26 Ammonium umol/L 0.86 1.83 27 Flag:Ammonium n/a $END $TABLE: CHANNEL DETAIL ! No Pad Start Width Format Type Decimal_Places !--- ---- ----- ----- ------ ---- -------------- 1 -99 ' ' 5 I I 0 2 -99 ' ' 7 F ' ' 1 3 -99 ' ' 9 F ' ' 4 4 -99 ' ' 6 F ' ' 1 5 -99 ' ' 8 F ' ' 3 6 -99 ' ' 7 F ' ' 1 7 -99 ' ' 7 F ' ' 2 8 -99 ' ' 6 F ' ' 1 9 -99 ' ' 9 F ' ' 4 10 ' ' ' ' 5 I I 0 11 -99 ' ' 3 I I 0 12 -99 ' ' 9 F R4 4 13 0 ' ' 3 NQ C ' ' 14 -99 ' ' 7 F R4 2 15 0 ' ' 3 NQ C ' ' 16 -99 ' ' 7 F R4 2 17 0 ' ' 3 NQ C ' ' 18 -99 ' ' 8 F R4 3 19 0 ' ' 3 NQ C ' ' 20 -99 ' ' 6 F R4 1 21 0 ' ' 3 NQ C ' ' 22 -99 ' ' 6 F R4 1 23 0 ' ' 3 NQ C ' ' 24 -99 ' ' 7 F R4 2 25 0 ' ' 3 NQ C ' ' 26 -99 ' ' 7 F R4 2 27 0 ' ' 3 NQ C ' ' $END $REMARKS Flag channels initialized with zeros. Non-zero values have the following significance: -------------------------------------------------------------------------------------- 1 = Sample for this measurement was drawn from water bottle but not analyzed (not normally used). 2 = Acceptable measurement (not normally used). 3 = Questionable measurement (no problem observed in sampling or analysis, but value is not trusted, nonetheless; includes outlyers). 4 = Bad measurement (known problem with sampling or analysis, but not serious enough to completely discard the value). 5 = Not reported (lost sample; unredeemably bad measurement). 6 = Mean of replicate measurements. 7 = Manual chromatographic peak measurement. 8 = Irregular digital chromatographic peak integration. 9 = Sample not drawn for this measurement from this bottle (not normally used). -------------------------------------------------------------------------------------- $END *ADMINISTRATION MISSION : 2010-12 AGENCY : IOS, Ocean Sciences Division, Sidney, B.C. COUNTRY : Canada PROJECT : La Perouse SCIENTIST : Yelland D. PLATFORM : John P. Tully *LOCATION GEOGRAPHIC AREA : North-East Pacific STATION : CS06 EVENT NUMBER : 116 LATITUDE : 51 0.05000 N ! (deg min) LONGITUDE : 128 51.92000 W ! (deg min) WATER DEPTH : 66 ALTIMETER (M) : 9.5 ! custom item $REMARKS Altimeter value is distance from bottom and is calculated as the median of the deepest 2 metres of data. $END *INSTRUMENT TYPE : Sea-Bird CTD MODEL : SBE-911plus SERIAL NUMBER : 0506 LOCATION : Mid-ship ! custom item $REMARKS SOFTWARE VERSION SEASAVE V 7.18C $END *HISTORY $TABLE: PROGRAMS ! Name Vers Date Time Recs In Recs Out ! ------------------------ ------ ---------- -------- --------- --------- SBE_IOS 3.1 2010/08/30 15:02:11 121 121 JOIN 2.4.2 2010/08/30 16:00:55 677 677 CLEAN 5.0.2 2010/08/31 17:28:59 ? ? ADDSAMP 3.4 2010/08/31 17:30:05 677 677 BINAVE 4.1.1 2010/08/31 17:30:18 677 6 MERGE 3.4 2010/11/04 15:35:39 6 6 CLEAN 5.0.2 2010/11/04 15:35:46 ? ? CALIB 11.7 2010/11/04 15:36:01 6 6 SORT 3.5 2010/11/04 15:36:17 6 6 REMOVECH 8.0 2010/11/04 15:37:54 6 6 CHGUNITS 3.0 2010/11/04 15:38:12 6 6 REORDER 1.2.1 2010/11/04 15:38:51 ? ? HDREDIT2 2.5.1 2010/11/04 15:39:55 ? ? CALIB 11.7 2013/06/04 13:14:35 6 6 HDREDIT2 2.6 2013/07/08 08:50:14 ? ? CHANGE_FLAGS 1.0 2013/07/29 14:31:28 6 6 CHANGE_CTD_CHANNEL_NAMES 1.0 2013/12/16 15:34:46 6 6 CHANGE_FLAGS 2.0 2014/11/20 09:57:01 6 6 $END $REMARKS -CLEAN functions: 2010/08/31 17:28:59 Set event to last 4 characters of file name -The following ADDSAMP parameters were used: Sample Number Lookup File: Q:\Cruise_Data_Processing\2010-12\Processing\hydro\addsamp.csv Bottle Channel Name: Bottle_Number -The following BINAVE parameters were used: Bin channel = Bottle_Number Averaging interval = 1.00 Minimum bin value = 0.000 Average value was used Interpolated values were NOT used for empty bins Channel 'NUMBER_OF_BIN_RECORDS' was added to file. -The following MERGE parameters were used: 2010/11/04 15:35:36 2010/11/04 15:35:36 2010/11/04 15:35: Merge Channel: Bottle_Number Merge Scheme Used: Add Secondary to Primary Overlap Scheme Used: Keep Primary Primary Channels to Include: ALL Secondary Channels to Include: Salinity:Bottle, Flag:Salinity:Bottle, Chlorophyll:Extracted, Flag:Chlorophyll:Extracted, Phaeo-Pigment:Extracted, Flag:Phaeo-Pigment:Extracted, Oxygen:Dissolved, Flag:Oxygen:Dissolved, Nitrate_plus_Nitrite, Flag:Nitrate_plus_Nitrite, Silicate, Flag:Silicate, Phosphate, Flag:Phosphate, Ammonium, Flag:Ammonium, Dimethyl_Sulphide, Flag:Dimethyl_Sulphide Primary file : Q:\Cruise_Data_Processing\2010-12\Processing\hydro\2010-12-0116.samavg Secondary file: Q:\Cruise_Data_Processing\2010-12\Processing\hydro\2010-12-0116.mrgcln1 Comments from secondary file: Q:\Cruise_Data_Processing\2010-12\Processing\hydro\2010-12-0116.mrgcln1 ----------------------------------------------------------------------- -CLEAN functions: 2010/11/04 15:35:08 20 Reduce header to sections: FIL ADM LOC DEP REC INS HIS RAW CAL COM Remarks removed from kept sections. -CLEAN functions: 2010/11/04 15:35:44 20 Remove Sea-Bird comments from the header. -CALIB parameters: 2010/11/04 15:36:01 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = Q:\Cruise_Data_Processing\2010-12\Processing\doc\2010-12-recal1.ccf Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 3 Pressure dbars 10 0.8000000E+00 0.9998800E+00 8 Transmissivity %/metre 10 0.0000000E+00 0.2440000E+01 16 Oxygen:Dissolved:SBE mL/L 10 -0.4300000E-02 0.1033900E+01 18 Salinity:T1:C1 PSS-78 10 -0.2500000E-02 0.1000000E+01 -SORT parameters: 2010/11/04 15:36:17 Sorted in ascending order of channel Pressure [dbars] -REMOVECH 2010/11/04 15:37:54 The following CHANNEL(S) were removed: Scan_Number Temperature:Primary [deg C (ITS90)] Conductivity:Primary [S/m] Conductivity:Secondary [S/m] Oxygen:Voltage:SBE [volts] Altimeter [metres] Descent_Rate [m/s] Status:Pump Salinity:T0:C0 [PSS-78] Flag -CHANGE units: 'Oxygen:Dissolved:SBE [mL/L]' changed from mL/L to umol/kg -HEADER EDITS: 2010/11/04 15:39:55 Applied edit header: Q:\Cruise_Data_Processing\2010-12\Processing\doc\2010-12-bot-hdr.txt Channel 2: Pressure [decibar] Units: dbars ==> decibar Channel 5: Fluorescence:URU:Seapoint [mg/m^3] Name: Fluorescence:Seapoint ==> Fluorescence:URU:Seapoint Channel 6: PAR [uE/m^2/sec] Format: F11.3 ==> F7.1 Channel 7: Oxygen:Dissolved:SBE [mL/L] Format: F8.3 ==> F7.2 Channel 13: Flag:Salinity:Bottle [n/a] Units: ==> n/a Channel 14: Chlorophyll:Extracted [mg/m^3] Units: ==> mg/m^3 Format: F8.3 ==> F7.2 Channel 15: Flag:Chlorophyll:Extracted [n/a] Units: ==> n/a Channel 18: Oxygen:Dissolved [mL/L] Units: ==> mL/L Channel 19: Flag:Oxygen:Dissolved [n/a] Units: ==> n/a Channel 16: Phaeo-Pigment:Extracted [mg/m^3] Units: ==> mg/m^3 Channel 26: Ammonium [umol/L] Units: ==> umol/L Format: F8.4 ==> F7.2 -CALIB parameters: 2013/06/04 13:14:35 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = C:\DATA\Nutrients\doc\Nutrients-recal1.ccf Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 20 Nitrate_plus_Nitrite umol/L 10 0.1709000E+00 0.9812000E+00 24 Phosphate umol/L 10 0.4530000E-01 0.1011500E+01 -HEADER EDITS: 2013/07/08 08:50:14 Applied edit header: C:\DATA\Nutrients\doc\headedit-correction.txt $END *COMMENTS NOTE: THis file contains data from 2 bottle files, the 55db data come from file 2010-12-0116.ros and the rest of the data are from file 2010-12-0116up.ros. Comments from secondary file: Q:\Cruise_Data_Processing\2010-12\Processing\hydro\2010-12-0116.mrgcln1 ----------------------------------------------------------------------- Comments from secondary file: Q:\Cruise_Data_Processing\2010-12\Processing\hydro\2010-12-0116.sal ------------------------------------------------------------------- Sample_Number 445: ALL SAMPLES: CTD data for this bottle were lost due to a computer crash. Data were fabricated from the full profile just before the crash. There were no problems noted in the analyses, but we cannot be sure of the level from which the samples came. Analysis methods: ----------------- Chlorophyll samples were analyzed at sea using a Chemistry Turner Designs 10AU fluorometer which was calibrated on May 12, 2009 using pure chlorophyll a. Chlorophyll precision was determined by analyzing replicate samples drawn from one Niskin. For details see worksheet “Precision” in file QF2010-12 CHL.xls. Oxygen samples were analyzed at sea using an automated Winkler titration system consisting of a Brinkmann 765 Dosimat, with a PC950 colorimeter with a 450nm filter, using the procedures of Carpenter (1965). For details and precision analysis see document 2010-12oxy.xlsx. Salinity samples were collected in glass bottles and analyzed at IOS on a Guildline model 8400B Autosal (S/N 69086) standardized with IAPSO standard seawater. See file 2009-12-salinity-duplicates.xls for information on precision and 2010-12-sals.xls for analysis output. Nutrient samples were collected in plastic tubes and most were analyzed frozen at IOS using an Astoria autoanalyzer following methods described in Barwell-Clarke and Whitney (1996). Deep Silicate samples (400m and below) were analyzed cool at IOS. For full data and details on nutrient duplicates and precision see file QF2010-12nuts.xls. Ammonia samples were analysed fresh at sea using a TD700 fluorometer. For more information including details on precision see 2010-12_NH4.xls. References: 1. Carpenter, J.H. 1965. The Chesapeake Bay Institute Technique for the Winkler Dissolved Oxygen Method. Limmnol. & Oceanogr., 10: 141-143. 2. J. Barwell-Clarke and F. Whitney. 1996. Institute of Ocean Sciences Nutrient Methods and Analysis. Canadian Technical Report of Hydrography and Ocean Sciences, No. 182, 43 pp. ********************************************************************************** Transmissometer #1005DR was calibrated in March 2008, and drifted significantly but steadily until July 2009; then a sudden shift occurred, so that maximum values between September 2009 and July 2010 were very low, ~25%/m. In August 2010 a study was made of transmissivity that led to a decision to apply post-processing corrections to all cruises between March 2008 and June 2010. Transmissivity data from this cruise were corrected by multiplying the original values by correction factor 2.44, which was based on the assumption that deep offshore transmissivity should be about 62%/m. For details on the transmissometer post-processing see: OSD_Data_Archive:\Cruise_Data\DOCUMENTS\Transmissometer 1005DR Corrections.doc These data should still be considered nominal. ********************************************************************************** July 2013: A correction has been applied to Nitrate_plus_Nitrite and Phosphate data from deep-water cruises analyzed at IOS between 2009 and 2012. For details see the following report: Corrections to Nitrate and Phosphate for Deep-Water Cruises from 2009 to 2012.pdf which is stored in folder: \\Cruise_Data\DOCUMENTS\Analysis Reference Papers *CALIBRATION $TABLE: CORRECTED CHANNELS ! Name Units Fmla Pad Coefficients ! ---------------------- --------- ---- ------ ------------ Pressure dbars 10 -99 () (0.8 0.99988) Transmissivity %/metre 10 -99 () (0 2.44) Oxygen:Dissolved:SBE mL/L 10 -99 () (-0.43E-02 1.0339) Salinity:T1:C1 PSS-78 10 -99 () (-0.25E-02 1) Nitrate_plus_Nitrite umol/L 10 -99 () (0.1709 0.9812) Phosphate umol/L 10 -99 () (0.453E-01 1.0115) $END !-1-- --2--- ---3---- --4-- ---5--- --6--- --7--- --8-- ---9---- -10- 11 ---12--- 13 --14-- 15 --16-- 17 ---18-- 19 --20- 21 --22- 23 --24-- 25 --26-- 27 !Samp Pressu Temperat Trans Fluores PAR Oxygen Oxyge Salinity Numb Bo Salinity Fl Chloro Fl Phaeo- Fl Oxygen: Fl Nitra Fl Silic Fl Phosph Fl Ammoni Fl !le_ re ure: missi cence: : n: :T1:C1 er_o tt :Bottle ag phyll: ag Pigmen ag Dissolv ag te_ ag ate ag ate ag um ag !Numb Secondar vity URU: Dissol Disso ~bin ~u ~o Extrac ~a t: ~a ed ~o plus_ ~t ~i ~p ~o !er y Seapoin ved: lved: _rec mb tt ted ct Extrac ct lv Nitri ri ca ha ni ! t SBE SBE ords er le ed ted ed ed te te te te um !---- ------ -------- ----- ------- ------ ------ ----- -------- ---- -- -------- -- ------ -- ------ -- ------- -- ----- -- ----- -- ------ -- ------ -- *END OF HEADER 449 7.0 10.2433 52.0 0.538 8.0 6.53 284.6 31.2820 121 6 31.2748 0 1.14 6 0.28 6 6.743 0 2.7 0 6.0 0 0.61 0 0.86 6 448 10.9 9.9237 53.9 0.423 6.9 6.40 278.9 31.3873 121 5 -99.0000 0 0.70 6 0.26 6 6.591 0 4.1 0 7.8 0 0.75 0 1.37 6 447 21.2 9.3812 56.8 0.281 6.4 6.10 265.7 31.5897 121 4 -99.0000 0 0.46 6 0.32 6 6.308 0 6.7 0 11.9 0 0.98 0 1.83 6 446 30.7 9.2018 58.6 0.219 6.4 5.98 260.7 31.6994 121 3 31.6979 0 -99.00 0 -99.00 0 6.187 0 7.8 6 13.1 6 1.04 6 -99.00 0 445 51.5 8.6606 58.6 0.190 6.4 6.19 269.8 32.1184 120 2 32.1178 4 -99.00 0 -99.00 0 5.634 64 11.9 4 20.7 4 1.28 4 -99.00 0 444 56.5 8.6712 58.6 0.181 6.4 5.46 237.9 32.1079 121 1 -99.0000 0 -99.00 0 -99.00 0 5.680 0 11.7 0 20.3 0 1.28 0 -99.00 0