*2014/11/20 09:56:49.43 *IOS HEADER VERSION 1.10 2011/10/26 2011/10/26 *FILE START TIME : UTC 2009/05/16 18:05:43.000 TIME INCREMENT : 0 0 0 0.416667E-01 0 ! (day hr min sec ms) NUMBER OF RECORDS : 13 DATA DESCRIPTION : Bottle:Rosette:Up:Stop + CTD:Up FILE TYPE : ASCII CRC : B0014B5 NUMBER OF CHANNELS : 13 $TABLE: CHANNELS ! No Name Units Minimum Maximum !--- --------------------------- --------------- -------------- -------------- 1 Sample_Number n/a 57 69 2 Pressure decibar 1.8 310.2 3 Temperature:Primary 'deg C (ITS90)' 7.8432 10.9128 4 Transmissivity %/metre 46.6378 57.362 5 Fluorescence:URU:Seapoint mg/m^3 0.123 0.868 6 PAR uE/m^2/sec 0 274.7 7 Bottle_Number n/a 1 13 8 Oxygen:Dissolved:SBE mL/L 3.56 7.05 9 Oxygen:Dissolved:SBE umol/kg 141.8 308.7 10 Salinity:T0:C0 PSS-78 29.2099 30.7604 11 Number_of_bin_records n/a 229 241 12 Oxygen:Dissolved mL/L 3.252 7.07 13 Flag:Oxygen:Dissolved n/a $END $TABLE: CHANNEL DETAIL ! No Pad Start Width Format Type Decimal_Places !--- ---- ----- ----- ------ ---- -------------- 1 -99 ' ' 5 I I 0 2 -99 ' ' 7 F ' ' 1 3 -99 ' ' 9 F ' ' 4 4 -99 ' ' 7 F ' ' 2 5 -99 ' ' 8 F ' ' 3 6 -99 ' ' 7 F ' ' 1 7 -99 ' ' 3 I I 0 8 -99 ' ' 7 F ' ' 2 9 -99 ' ' 6 F ' ' 1 10 -99 ' ' 9 F ' ' 4 11 ' ' ' ' 5 I I 0 12 -99 ' ' 8 F R4 3 13 0 ' ' 3 NQ C ' ' $END $REMARKS Flag channels initialized with zeros. Non-zero values have the following significance: -------------------------------------------------------------------------------------- 1 = Sample for this measurement was drawn from water bottle but not analyzed (not normally used). 2 = Acceptable measurement (not normally used). 3 = Questionable measurement (no problem observed in sampling or analysis, but value is not trusted, nonetheless; includes outlyers). 4 = Bad measurement (known problem with sampling or analysis, but not serious enough to completely discard the value). 5 = Not reported (lost sample; unredeemably bad measurement). 6 = Mean of replicate measurements. 7 = Manual chromatographic peak measurement. 8 = Irregular digital chromatographic peak integration. 9 = Sample not drawn for this measurement from this bottle (not normally used). -------------------------------------------------------------------------------------- $END *ADMINISTRATION MISSION : 2009-40 AGENCY : IOS, Ocean Sciences Division, Sidney, B.C. COUNTRY : Canada PROJECT : LaPerouse/Effingham/Georgia Strait SCIENTIST : Juhasz T. PLATFORM : John P. Tully *LOCATION GEOGRAPHIC AREA : WCVI / Strait of Georgia STATION : 14 EVENT NUMBER : 7 LATITUDE : 49 53.02000 N ! (deg min) LONGITUDE : 124 59.58000 W ! (deg min) WATER DEPTH : 316 ALTIMETER (M) : 6.13 ! custom item $REMARKS Altimeter value is distance from bottom and is calculated as the median of the deepest 2 metres of data. $END *INSTRUMENT TYPE : Sea-Bird CTD MODEL : SBE-911plus SERIAL NUMBER : 0443 $REMARKS SOFTWARE VERSION SEASAVE V 7.16 $END *HISTORY $TABLE: PROGRAMS ! Name Vers Date Time Recs In Recs Out ! ------------ ------ ---------- -------- --------- --------- SBE_IOS 3.1 2010/01/28 13:31:09 3133 3133 CTDEDIT 4.61 2010/01/28 14:20:47 3133 3133 CLEAN 5.0.2 2010/01/28 14:30:30 ? ? ADDSAMP 3.4 2010/02/24 16:12:20 3133 3133 BINAVE 4.1.1 2010/02/24 16:15:34 3133 13 MERGE 3.3 2010/06/25 09:10:06 13 13 CLEAN 5.0.2 2010/06/28 13:49:20 ? ? CALIB 11.7 2010/06/28 13:49:24 13 13 SORT 3.5 2010/06/28 14:35:42 13 13 REMOVECH 8.0 2010/06/28 15:57:57 13 13 CHGUNITS 3.0 2010/06/28 16:01:35 13 13 REORDER 1.2.1 2010/06/28 16:03:20 ? ? HDREDIT2 2.5.1 2010/06/28 16:04:32 ? ? CALIB 11.7 2010/08/17 15:15:29 13 13 HDREDIT2 2.5.1 2010/08/17 16:16:46 ? ? CHANGE_FLAGS 1.0 2013/07/16 11:49:37 13 13 CHANGE_FLAGS 2.0 2014/11/20 09:56:49 13 13 $END $REMARKS -CTDEDIT 2010/01/28 14:20:47 17 changes in channel Salinity:T1:C1 -CLEAN functions: 2010/01/28 14:30:26 20 Set event to last 4 characters of file name -The following ADDSAMP parameters were used: Sample Number Lookup File: Q:\Cruise_Data_Processing\2009-40\processing\hydro\addsamp.csv Bottle Channel Name: Bottle_Number -The following BINAVE parameters were used: Bin channel = Bottle_Number Averaging interval = 1.00 Minimum bin value = 0.000 Average value was used Interpolated values were NOT used for empty bins Channel 'NUMBER_OF_BIN_RECORDS' was added to file. -The following MERGE parameters were used: 2010/06/25 09:10:06 2010/06/25 09:10:06 2010/06/25 09:10: Merge Channel: Sample_Number Merge Scheme Used: Add Secondary to Primary Overlap Scheme Used: Keep Primary Primary Channels to Include: ALL Secondary Channels to Include: Salinity:Bottle, Flag:Salinity:Bottle, Chlorophyll:Extracted, Flag:Chlorophyll:Extracted, Oxygen:Dissolved, Flag:Oxygen:Dissolved, Nitrate_plus_Nitrite, Flag:Nitrate_plus_Nitrite, Silicate, Flag:Silicate, Phosphate, Flag:Phosphate Primary file : Q:\Cruise_Data_Processing\2009-40\Processing\hydro\2009-40-0007.samavg Secondary file: Q:\Cruise_Data_Processing\2009-40\Processing\hydro\2009-40-0007.mrgcln1 -CLEAN functions: 2010/06/28 13:49:20 20 Remove Sea-Bird comments from the header. -CALIB parameters: 2010/06/28 13:49:24 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = Q:\Cruise_Data_Processing\2009-40\Processing\doc\2009-40-recal1.ccf Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 19 Oxygen:Dissolved:SBE mL/L 10 0.2000000E-01 0.1137500E+01 -SORT parameters: 2010/06/28 14:35:42 Sorted in ascending order of channel Pressure -REMOVECH 2010/06/28 15:57:57 The following CHANNEL(S) were removed: Scan_Number Temperature:Secondary [deg C (ITS90)] Conductivity:Primary [S/m] Conductivity:Secondary [S/m] Oxygen:Voltage:SBE [volts] pH:SBE [pH Units] Altimeter [metres] Descent_Rate [m/s] Status:Pump PAR:Reference [uE/m^2/sec] Salinity:T1:C1 [PSS-78] Flag -CHANGE units: 'Oxygen:Dissolved [ ]' changed from mL/L to umol/kg -HEADER EDITS: 2010/06/28 16:04:32 Applied edit header: Q:\Cruise_Data_Processing\2009-40\Processing\doc\2009-40-bot-hdr.txt Channel 2: Pressure [decibar] Units: dbars ==> decibar Format: F10.3 ==> F7.1 Channel 5: Fluorescence:URU:Seapoint [mg/m^3] Name: Fluorescence:Seapoint ==> Fluorescence:URU:Seapoint Channel 6: PAR [uE/m^2/sec] Format: F11.3 ==> F7.1 Channel 8: Oxygen:Dissolved:SBE [mL/L] Format: F8.3 ==> F7.2 Channel 12: Oxygen:Dissolved [mL/L] Units: ==> mL/L Channel 13: Flag:Oxygen:Dissolved [n/a] Units: ==> n/a -CALIB parameters: 2010/08/17 15:15:29 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = Q:\Cruise_Data_Processing\Trans Cor\2009-40\Processing\doc\2009-40-recal-tr.ccf Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 4 Transmissivity %/metre 10 0.0000000E+00 0.1247000E+01 -HEADER EDITS: 2010/08/17 16:16:46 Applied edit header: Q:\Cruise_Data_Processing\Trans Cor\Trans_Correction1.TXT $END *COMMENTS CTDEDIT was used to clean a few points in Salinity:T1:C1 around 800db and to remove some points from Salinity:T1:C1 around 150db. Comments from secondary file: Q:\Cruise_Data_Processing\2009-40\Processing\hydro\2009-40-0007.mrgcln1 ----------------------------------------------------------------------- Comments from secondary file: Q:\Cruise_Data_Processing\2009-40\Processing\hydro\2009-40-0007.add ------------------------------------------------------------------- Sample_Number 58: DO: very low trans; outlier in COMPARE. Analysis methods: ----------------- Oxygen samples were analyzed at sea using an automated titration system consisting of a Brinkman Dosimat (model 665) and a PC 950 Colorimeter. File file 2009-40_oxy.xls includes precision analysis. There was a problem with the 450 nm filter on the colorimeter probe such that starting transmissivities for all samples were reading ~60% regardless of their actual value. This problem was not noticed during the cruise by the analyst but led to a few aborted endpoints as the software did not register any changes in transmissivity below this value. Samples that were successfully titrated do not appear affected by this problem and all standardization parameters are reasonable. Salinity samples were collected in glass bottles and analyzed at IOS on a Guildline model 8400B Autosal standardized with IAPSO standard seawater. There were no duplicates. Nutrient samples were analyzed frozen using an Astoria Pacific Nutrient Analyzer with FASPAC II software following methods described in Barwell-Clarke and Whitney (1996).File ThompsonNutsJuly17_2009-40.xls includes a summary of duplicates but no analysis of precision. References: 1. Carpenter, J.H. 1965. The Chesapeake Bay Institute Technique for the Winkler Dissolved Oxygen Method. Limmnol. & Oceanogr., 10: 141-143. 2. J. Barwell-Clarke and F. Whitney. 1996. Institute of Ocean Sciences Nutrient Methods and Analysis. Canadian Technical Report of Hydrography and Ocean Sciences, No. 182, 43 pp. ----------------------------------------------------------------------------------- NOTE: The comparison of SBE DO and bottles was unusual. It seems likely that there was a problem with the plumbing that increased the response time, and that the problem gradually cleared. A time-dependent recalibration scheme was used for the SBE Dissolved Oxygen sensor. The comparison was complex and the fact that a bottle does not show up as an outlier in COMPARE is not as strong a piece of evdience as usual. ********************************************************************************* Transmissometer #1005DR was calibrated in March 2008, and drifted significantly but steadily until July 2009; then a sudden shift occurred, so that maximum values between September 2009 and July 2010 were very low, ~25%/m. In August 2010 a study was made of transmissivity that led to a decision to apply post-processing corrections to all cruises between March 2008 and June 2010. Transmissivity data from this cruise were corrected by multiplying the original values by a correction factor, which was based on assumptions that deep offshore transmissivity from a June 2009 cruise should be about 62%/m and that drift was linear with time. The corrections produced reasonable results for all cruises. For details on how the correction factor was derived see: OSD_Data_Archive:\Cruise_Data\DOCUMENTS\Transmissometer 1005DR Corrections.doc These data should be considered estimates. ********************************************************************************* *CALIBRATION $TABLE: CORRECTED CHANNELS ! Name Units Fmla Pad Coefficients ! ---------------------- --------- ---- ------ ------------ Oxygen:Dissolved:SBE mL/L 10 -99 () (0.2E-01 1.1375) Transmissivity %/metre 10 -99 () (0 1.247) $END !-1-- --2--- ---3---- --4--- ---5--- --6--- 7- --8--- --9-- ---10--- -11- ---12-- 13 !Samp Pressu Temperat Transm Fluores PAR Bo Oxygen Oxyge Salinity Numb Oxygen: Fl !le_ re ure: issivi cence: tt : n: :T0:C0 er_o Dissolv ag !Numb Primary ty URU: ~u Dissol Disso ~bin ed ~o !er Seapoin mb ved: lved: _rec lv ! t er SBE SBE ords ed !---- ------ -------- ------ ------- ------ -- ------ ----- -------- ---- ------- -- *END OF HEADER 69 1.8 10.9128 46.64 0.868 274.7 13 7.05 308.7 29.2099 241 7.070 0 68 11.2 9.7683 52.12 0.806 25.9 12 6.20 262.8 29.6166 241 6.020 0 67 20.6 9.1025 55.49 0.548 5.6 11 5.25 231.4 29.9314 241 5.303 0 66 29.9 8.9707 55.24 0.521 1.5 10 5.07 224.7 29.9876 241 5.150 0 65 49.7 8.6694 57.11 0.272 0.1 9 4.57 201.5 30.1462 241 4.618 0 64 75.6 8.0907 57.36 0.145 0.0 8 3.78 166.6 30.4092 241 3.821 0 63 99.1 7.9797 56.74 0.136 0.0 7 3.73 162.7 30.4893 241 3.730 0 62 126.2 7.8432 56.74 0.130 0.0 6 4.02 176.4 30.5465 241 4.045 0 61 150.2 7.9382 55.87 0.147 0.0 5 3.93 172.2 30.6263 229 3.950 0 60 177.8 7.9657 55.12 0.132 0.0 4 3.90 170.1 30.6609 241 3.902 0 59 200.9 7.9879 54.74 0.123 0.0 3 3.90 170.5 30.6843 241 3.911 0 58 251.2 8.1295 54.62 0.124 0.0 2 3.68 141.8 30.7414 241 3.252 4 57 310.2 8.1861 48.38 0.128 0.0 1 3.56 155.2 30.7604 241 3.559 0