*2014/11/20 09:56:40.81 *IOS HEADER VERSION 1.10 2011/10/26 2011/10/26 *FILE START TIME : UTC 2009/09/05 12:58:01.000 TIME INCREMENT : 0 0 0 0.416667E-01 0 ! (day hr min sec ms) NUMBER OF RECORDS : 7 DATA DESCRIPTION : Bottle:Rosette:Up:Stop + CTD:Up FILE TYPE : ASCII CRC : 9634199C NUMBER OF CHANNELS : 23 $TABLE: CHANNELS ! No Name Units Minimum Maximum !--- ---------------------------- --------------- -------------- -------------- 1 Pressure decibar 6.4 100.7 2 Transmissivity %/metre 35.3 45.3 3 Fluorescence:URU:Seapoint mg/m^3 0.132 1.31 4 PAR uE/m^2/sec 0 0.1 5 Oxygen:Dissolved:SBE mL/L 1.48 5.62 6 Oxygen:Dissolved:SBE umol/kg 64.2 244.7 7 Sample_Number n/a 9 15 8 Bottle_Number n/a 1 7 9 Number_of_bin_records n/a 241 241 10 Chlorophyll:Extracted mg/m^3 1.61 1.73 11 Flag:Chlorophyll:Extracted n/a 12 Oxygen:Dissolved mL/L 1.418 5.594 13 Flag:Oxygen:Dissolved n/a 14 Nitrate_plus_Nitrite umol/L 17.3419 36.9659 15 Flag:Nitrate_plus_Nitrite n/a 16 Silicate umol/L 38.1 56.7 17 Flag:Silicate n/a 18 Phosphate umol/L 1.4614 2.81681 19 Flag:Phosphate n/a 20 Ammonium umol/L 0.29 0.39 21 Flag:Ammonium n/a 22 Temperature:Primary 'deg C (ITS90)' 7.0552 12.335 23 Salinity:T0:C0 PSS-78 32.6384 33.7754 $END $TABLE: CHANNEL DETAIL ! No Pad Start Width Format Type Decimal_Places !--- ---- ----- ----- ------ ---- -------------- 1 -99 ' ' 7 F ' ' 1 2 -99 ' ' 6 F ' ' 1 3 -99 ' ' 8 F ' ' 3 4 -99 ' ' 7 F ' ' 1 5 -99 ' ' 7 F ' ' 2 6 -99 ' ' 6 F ' ' 1 7 -99 ' ' 5 I I 0 8 -99 ' ' 3 I I 0 9 ' ' ' ' 5 I I 0 10 -99 ' ' 7 F R4 2 11 0 ' ' 3 NQ C ' ' 12 -99 ' ' 8 F R4 3 13 0 ' ' 3 NQ C ' ' 14 -99 ' ' 6 F R4 1 15 0 ' ' 3 NQ C ' ' 16 -99 ' ' 6 F R4 1 17 0 ' ' 3 NQ C ' ' 18 -99 ' ' 7 F R4 2 19 0 ' ' 3 NQ C ' ' 20 -99 ' ' 7 F R4 2 21 0 ' ' 3 NQ C ' ' 22 -99 ' ' 9 F ' ' 4 23 -99 ' ' 9 F ' ' 4 $END $REMARKS Flag channels initialized with zeros. Non-zero values have the following significance: -------------------------------------------------------------------------------------- 1 = Sample for this measurement was drawn from water bottle but not analyzed (not normally used). 2 = Acceptable measurement (not normally used). 3 = Questionable measurement (no problem observed in sampling or analysis, but value is not trusted, nonetheless; includes outlyers). 4 = Bad measurement (known problem with sampling or analysis, but not serious enough to completely discard the value). 5 = Not reported (lost sample; unredeemably bad measurement). 6 = Mean of replicate measurements. 7 = Manual chromatographic peak measurement. 8 = Irregular digital chromatographic peak integration. 9 = Sample not drawn for this measurement from this bottle (not normally used). -------------------------------------------------------------------------------------- Comments from secondary file: P:\Cruise_Data_Processing\Archive-updates\2009-11\2009-11-0004.mrg -------------------------------------------------------------------------------------- This file converted from Sea-Bird file: Q:\Cruise_Data_Processing\2009-11\Pro $END *ADMINISTRATION MISSION : 2009-11 AGENCY : IOS, Ocean Sciences Division, Sidney, B.C. COUNTRY : Canada PROJECT : La Perouse SCIENTIST : Yelland D. PLATFORM : John P. Tully *LOCATION GEOGRAPHIC AREA : WCVI STATION : LB04 EVENT NUMBER : 4 LATITUDE : 48 35.69000 N ! (deg min) LONGITUDE : 125 8.69000 W ! (deg min) WATER DEPTH : 113 ALTIMETER (M) : 11.7 ! custom item $REMARKS Altimeter value is distance from bottom and is calculated as the median of the deepest 2 metres of data. Comments from secondary file: P:\Cruise_Data_Processing\Archive-updates\2009-11\2009-11-0004.mrg ------------------------------------------------------------------ Altimeter value is distance from bottom and is calculated as the median of the deepest 2 metres of data. $END *INSTRUMENT TYPE : Sea-Bird CTD MODEL : SBE-911plus SERIAL NUMBER : 0585 LOCATION : : Aft-deck ! custom item $TABLE: SENSORS ! Name Abs Depth Serial No ! ------------------------- -------------- ---------- temperature:primary ' ' 4054 conductivity:primary ' ' 3321 pressure ' ' 77511 temperature:secondary ' ' 4700 conductivity:secondary ' ' 1766 Oxygen:SBE ' ' 1176 transmissometer:primary ' ' 983DR Fluorometer ' ' Seapoint irradiance:primary ' ' 4615 altimeter: ' ' ' ' surface ' ' 'degrees = 0.0' $END $REMARKS SOFTWARE VERSION SEASAVE V 7.18C Comments from secondary file: P:\Cruise_Data_Processing\Archive-updates\2009-11\2009-11-0004.mrg ------------------------------------------------------------------ SOFTWARE VERSION SEASAVE V 7.18C $END *HISTORY $TABLE: PROGRAMS ! Name Vers Date Time Recs In Recs Out ! ------------------------ ------ ---------- -------- --------- --------- SBE_IOS 3.1 2009/11/24 10:06:14 1687 1687 CLEAN 5.0.2 2009/11/24 11:27:12 1687 1687 ADDSAMP 3.4 2009/11/24 13:29:26 1687 1687 BINAVE 4.1.1 2009/11/24 13:31:16 1687 7 MERGE 3.3 2010/04/26 17:00:40 7 7 CLEAN 5.0.2 2010/04/28 09:43:44 ? ? CALIB 11.7 2010/04/28 13:04:43 7 7 SORT 3.5 2010/04/28 17:00:51 7 7 REMOVECH 8.0 2010/04/29 11:38:30 7 7 CHGUNITS 3.0 2010/04/29 11:38:47 7 7 REORDER 1.2.1 2010/04/29 12:05:31 ? ? HDREDIT2 2.5.1 2010/04/29 15:12:38 ? ? SORT 3.5 2011/11/29 15:13:17 7 7 MERGE 3.4 2011/11/29 15:19:27 7 7 REORDER 1.3 2011/11/29 15:21:25 ? ? SORT 3.5 2011/11/29 15:24:47 7 7 HDREDIT2 2.5.1 2011/11/29 15:24:59 ? ? CALIB 11.7 2013/06/04 13:12:59 7 7 HDREDIT2 2.6 2013/07/08 08:49:38 ? ? CHANGE_FLAGS 1.0 2013/07/29 14:31:14 7 7 CHANGE_CTD_CHANNEL_NAMES 1.0 2013/12/16 15:34:14 7 7 CHANGE_FLAGS 2.0 2014/11/20 09:56:40 7 7 $END $REMARKS -CLEAN functions: 2009/11/24 11:27:10 20 Reset #RECS, MIN & MAX values in header. Set event to last 4 characters of file name -The following ADDSAMP parameters were used: Sample Number Lookup File: Q:\Cruise_Data_Processing\2009-11\Processing\hydro\addsamp.csv Bottle Channel Name: Bottle_Number -The following BINAVE parameters were used: Bin channel = Bottle_Number Averaging interval = 1.00 Minimum bin value = 0.000 Average value was used Interpolated values were NOT used for empty bins Channel 'NUMBER_OF_BIN_RECORDS' was added to file. -The following MERGE parameters were used: 2010/04/26 17:00:40 2010/04/26 17:00:40 2010/04/26 17:00: Merge Channel: Sample_Number Merge Scheme Used: Add Secondary to Primary Overlap Scheme Used: Keep Primary Primary Channels to Include: ALL Secondary Channels to Include: Salinity:Bottle, Flag:Salinity:Bottle, Chlorophyll:Extracted, Flag:Chlorophyll:Extracted, Oxygen:Dissolved, Flag:Oxygen:Dissolved, Nitrate_plus_Nitrite, Flag:Nitrate_plus_Nitrite, Silicate, Flag:Silicate, Phosphate, Flag:Phosphate, Ammonium, Flag:Ammonium Primary file : Q:\Cruise_Data_Processing\2009-11\Processing\hydro\2009-11-0004.samavg Secondary file: Q:\Cruise_Data_Processing\2009-11\Processing\hydro\2009-11-0004.mrgcln1 -CLEAN functions: 2010/04/28 09:43:44 20 Remove Sea-Bird comments from the header. -CALIB parameters: 2010/04/28 13:04:43 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = Q:\Cruise_Data_Processing\2009-11\Processing\doc\2009-11-recal1.ccf Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 17 Oxygen:Dissolved:SBE mL/L 10 0.7200000E-02 0.1058800E+01 0.2400000E-02 -SORT parameters: 2010/04/28 17:00:51 Sorted in ascending order of channel Pressure -REMOVECH 2010/04/29 11:38:30 The following CHANNEL(S) were removed: Scan_Number Temperature:Secondary [deg C (ITS90)] Conductivity:Primary [S/m] Conductivity:Secondary [S/m] Oxygen:Voltage:SBE [volts] Altimeter [metres] Descent_Rate [m/s] Status:Pump Salinity:T1:C1 [PSS-78] Flag -CHANGE units: 'Oxygen:Dissolved:SBE [mL/L]' changed from mL/L to umol/kg -HEADER EDITS: 2010/04/29 15:12:38 Applied edit header: Q:\Cruise_Data_Processing\2009-11\Processing\doc\2009-11-bot-hdr.txt Channel 2: Pressure [decibar] Units: dbars ==> decibar Format: F10.3 ==> F7.1 Channel 5: Fluorescence:URU:Seapoint [mg/m^3] Name: Fluorescence:Seapoint ==> Fluorescence:URU:Seapoint Channel 6: PAR [uE/m^2/sec] Format: F11.3 ==> F7.1 Channel 8: Oxygen:Dissolved:SBE [mL/L] Format: F8.3 ==> F7.2 Channel 12: Chlorophyll:Extracted [mg/m^3] Units: ==> mg/m^3 Channel 14: Oxygen:Dissolved [mL/L] Units: ==> mL/L Format: F6.1 ==> F8.3 Channel 18: Silicate [umol/L] Format: F7.2 ==> F6.1 Channel 22: Ammonium [umol/L] Units: ==> umol/L Channel 23: Flag:Ammonium [] Pad: 0 ==> -99 -SORT parameters: 2011/11/29 15:13:17 Sorted in ascending order of channel Sample_Number [n/a] -The following MERGE parameters were used: 2011/11/29 15:19:27 2011/11/29 15:19:27 2011/11/29 15:19: Merge Channel: Bottle_Number Merge Scheme Used: Add Secondary to Primary Overlap Scheme Used: Keep Primary Primary Channels to Include: Sample_Number [n/a], Pressure [decibar], Temperature:Primary [deg C (ITS90)], Transmissivity [%/metre], Fluorescence:URU:Seapoint [mg/m^3], PAR [uE/m^2/sec], Salinity:T0:C0 [PSS-78], Oxygen:Dissolved:SBE [mL/L], Oxygen:Dissolved:SBE [umol/kg], Bottle_Number [n/a], Number_of_bin_records [n/a], Salinity:Bottle [PSS-78], Flag:Salinity:Bottle [ ], Chlorophyll:Extracted [mg/m^3], Flag:Chlorophyll:Extracted [ ], Flag:Oxygen:Dissolved [ ], Nitrate_plus_Nitrite [umol/L], Flag:Nitrate_plus_Nitrite [ ], Silicate [umol/L], Flag:Silicate [ ], Phosphate [umol/L], Flag:Phosphate [ ], Ammonium [umol/L], Flag:Ammonium [ ] Secondary Channels to Include: Oxygen:Dissolved Primary file : P:\Cruise_Data_Processing\Archive-updates\2009-11\2009-11-0004.chesort Secondary file: P:\Cruise_Data_Processing\Archive-updates\2009-11\2009-11-0004.mrg Comments from secondary file: P:\Cruise_Data_Processing\Archive-updates\2009-11\2009-11-0004.mrg ------------------------------------------------------------------ -CLEAN functions: 2009/11/24 11:27:10 20 Reset #RECS, MIN & MAX values in header. Set event to last 4 characters of file name -The following ADDSAMP parameters were used: Sample Number Lookup File: Q:\Cruise_Data_Processing\2009-11\Processing\hydro\addsamp.csv Bottle Channel Name: Bottle_Number -The following BINAVE parameters were used: Bin channel = Bottle_Number Averaging interval = 1.00 Minimum bin value = 0.000 Average value was used Interpolated values were NOT used for empty bins Channel 'NUMBER_OF_BIN_RECORDS' was added to file. -The following MERGE parameters were used: 2010/04/26 17:00:40 2010/04/26 17:00:40 2010/04/26 17:00: Merge Channel: Sample_Number Merge Scheme Used: Add Secondary to Primary Overlap Scheme Used: Keep Primary Primary Channels to Include: ALL Secondary Channels to Include: Salinity:Bottle, Flag:Salinity:Bottle, Chlorophyll:Extracted, Flag:Chlorophyll:Extracted, Oxygen:Dissolved, Flag:Oxygen:Dissolved, Nitrate_plus_Nitrite, Flag:Nitrate_plus_Nitrite, Silicate, Flag:Silicate, Phosphate, Flag:Phosphate, Ammonium, Flag:Ammonium Primary file : Q:\Cruise_Data_Processing\2009-11\Processing\hydro\2009-11-0004.samavg Secondary file: Q:\Cruise_Data_Processing\2009-11\Processing\hydro\2009-11-0004.mrgcln1 -SORT parameters: 2011/11/29 15:24:47 Sorted in ascending order of channel Pressure -HEADER EDITS: 2011/11/29 15:24:59 Channel 12: Oxygen:Dissolved [mL/L] Units: ==> mL/L -CALIB parameters: 2013/06/04 13:12:59 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = C:\DATA\Nutrients\doc\Nutrients-recal1.ccf Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 14 Nitrate_plus_Nitrite umol/L 10 0.1709000E+00 0.9812000E+00 18 Phosphate umol/L 10 0.4530000E-01 0.1011500E+01 -HEADER EDITS: 2013/07/08 08:49:38 Applied edit header: C:\DATA\Nutrients\doc\headedit-correction.txt $END *COMMENTS Analysis methods: ----------------- Chlorophyll samples were analyzed at sea using a Chemistry Turner Designs 10AU fluorometer which was calibrated on May 13, 2009 using pure chlorophyll a. Chlorophyll precision was determined by analyzing replicate samples drawn from one Niskin. For details see worksheet “Precision” in file QF 2009-10CHL.xls. Oxygen samples were analyzed at sea using an automated titration system consisting of a Brinkman Dosimat (model 665) and a PC 950 Colorimeter. For information on precision see file 2009-11oxy.xls. Endpoint titers were optimized in post-processing using a best fit linear regression utility Salinity samples were collected in glass bottles and analyzed at IOS on a Guildline model 8400B Autosal standardized with IAPSO standard seawater. Samples from two casts were analyzed at sea on a Guildline Portasal; there are comments attached to those samples and all were flagged "d". See file 2009-10-salinity-duplicates.xls for information on AUtosal precision. Nutrient samples were collected in plastic tubes and analyzed fresh at sea using an Astoria Pacific autoanalyzer following methods described in Barwell-Clarke and Whitney (1996). For details on nutrient duplicates and precision see file QF2009-10nuts.xls. Ammonia samples were analysed fresh at sea using a TD700 fluorometer. For more information including details on precision see QF2009-11_NH4.xls. References: 1. Carpenter, J.H. 1965. The Chesapeake Bay Institute Technique for the Winkler Dissolved Oxygen Method. Limmnol. & Oceanogr., 10: 141-143. 2. J. Barwell-Clarke and F. Whitney. 1996. Institute of Ocean Sciences Nutrient Methods and Analysis. Canadian Technical Report of Hydrography and Ocean Sciences, No. 182, 43 pp. ----------------------------------------------------------------------------------- Comments from secondary file: P:\Cruise_Data_Processing\Archive-updates\2009-11\2009-11-0004.mrg ------------------------------------------------------------------ SBE HEADER Sea-Bird SBE 9 Data File: FileName = C:\data\2009-11\2009-11-0004.hex Software Version Seasave V 7.18c Temperature SN = 4054 Conductivity SN = 3321 Number of Bytes Per Scan = 40 Number of Voltage Words = 5 Number of Scans Averaged by the Deck Unit = 1 System UpLoad Time = Sep 05 2009 05:59:15 NMEA Latitude = 48 35.69 N NMEA Longitude = 125 08.69 W NMEA UTC (Time) = Sep 05 2009 12:58:01 Store Lat/Lon Data = Append to Every Scan Ship: Tully Cruise: 2009-11 Station: LB04 Latitude: Longitude: Depth (m): 113 # nquan = 18 # nvalues = 1687 # units = specified # name 0 = scan: Scan Count # name 1 = prDM: Pressure, Digiquartz [db] # name 2 = t090C: Temperature [ITS-90, deg C] # name 3 = t190C: Temperature, 2 [ITS-90, deg C] # name 4 = c0S/m: Conductivity [S/m] # name 5 = c1S/m: Conductivity, 2 [S/m] # name 6 = xmiss: Beam Transmission, Chelsea/Seatech/Wetlab CStar [%] # name 7 = flSP: Fluorescence, Seapoint # name 8 = sbeox0V: Oxygen Voltage, SBE 43 # name 9 = par: PAR/Irradiance, Biospherical/Licor # name 10 = altM: Altimeter [m] # name 11 = dz/dtM: Descent Rate [m/s] # name 12 = pumps: Pump Status # name 13 = sal00: Salinity [PSU] # name 14 = sal11: Salinity, 2 [PSU] # name 15 = sbeox0ML/L: Oxygen, SBE 43 [ml/l] # name 16 = nbf: number of bottles fired # name 17 = flag: 0.000e+00 # interval = seconds: 0.0416667 # start_time = Sep 05 2009 05:59:15 # sensor 0 = Frequency 0 temperature, primary, 4054, 24-Dec-08 # sensor 1 = Frequency 1 conductivity, primary, 3321, 16-Jan-09 , cpcor = -9.5 700e-08 # sensor 2 = Frequency 2 pressure, 77511, 13-MAR-00 # sensor 3 = Frequency 3 temperature, secondary, 4700, 24-Dec-08 # sensor 4 = Frequency 4 conductivity, secondary, 1766, 16-Jan-09 , cpcor = -9 .5700e-08 # sensor 5 = Extrnl Volt 0 Oxygen, SBE, primary, 1176, 10-Mar-09p # sensor 6 = Extrnl Volt 1 transmissometer, primary, 983DR, 27-June-06 # sensor 7 = Extrnl Volt 2 Fluorometer, Seapoint, primary # sensor 8 = Extrnl Volt 4 irradiance (PAR), primary, 4615, 15 Dec. 2000 # sensor 9 = Extrnl Volt 6 altimeter # sensor 10 = Extrnl Volt 9 surface irradiance (SPAR), degrees = 0.0 # datcnv_date = Nov 24 2009 09:59:45, 7.18c # datcnv_in = Q:\Cruise_Data_Processing\2009-11\RAW\CTD\2009-11-0004.hex Q:\Crui se_Data_Processing\2009-11\Processing\doc\2009-11-ctd.CON # datcnv_bottle_scan_range_source = BL file # datcnv_ox_hysteresis_correction = yes # datcnv_ox_tau_correction = yes END* July 2013: A correction has been applied to Nitrate_plus_Nitrite and Phosphate data from deep-water cruises analyzed at IOS between 2009 and 2012. For details see the following report: Corrections to Nitrate and Phosphate for Deep-Water Cruises from 2009 to 2012.pdf which is stored in folder: \\Cruise_Data\DOCUMENTS\Analysis Reference Papers *CALIBRATION $TABLE: CORRECTED CHANNELS ! Name Units Fmla Pad Coefficients ! ---------------------- -------- ---- ------ ------------ Oxygen:Dissolved:SBE mL/L 10 -99 () (0.72E-02 1.0588 0.24E-02) Nitrate_plus_Nitrite umol/L 10 -99 () (0.1709 0.9812) Phosphate umol/L 10 -99 () (0.453E-01 1.0115) $END !--1--- --2-- ---3--- --4--- --5--- --6-- -7-- 8- -9-- --10-- 11 ---12-- 13 --14- 15 --16- 17 --18-- 19 --20-- 21 ---22--- ---23--- !Pressu Trans Fluores PAR Oxygen Oxyge Samp Bo Numb Chloro Fl Oxygen: Fl Nitra Fl Silic Fl Phosph Fl Ammoni Fl Temperat Salinity !re missi cence: : n: le_ tt er_o phyll: ag Dissolv ag te_ ag ate ag ate ag um ag ure: :T0:C0 ! vity URU: Dissol Disso Numb ~u ~bin Extrac ~a ed ~o plus_ ~t ~i ~p ~o Primary ! Seapoin ved: lved: er mb _rec ted ct lv Nitri ri ca ha ni ! t SBE SBE er ords ed ed te te te te um !------ ----- ------- ------ ------ ----- ---- -- ---- ------ -- ------- -- ----- -- ----- -- ------ -- ------ -- -------- -------- *END OF HEADER 6.4 35.3 1.182 0.1 5.62 244.7 15 7 241 1.61 6 5.594 0 17.3 0 38.1 0 1.46 0 0.39 6 12.3350 32.6384 8.3 35.5 1.310 0.0 5.50 239.6 14 6 241 1.73 6 5.498 0 17.6 0 38.4 0 1.51 0 0.31 6 12.2020 32.6454 20.2 38.2 1.289 0.0 4.39 191.2 13 5 241 1.66 6 4.424 6 23.4 0 40.8 0 1.88 0 0.29 6 10.6622 32.7470 30.4 44.7 0.415 0.0 2.82 122.5 12 4 241 -99.00 0 2.845 0 31.4 0 45.1 0 2.41 0 -99.00 0 8.1681 33.1691 49.0 44.2 0.217 0.0 2.14 93.2 11 3 241 -99.00 0 2.117 0 33.9 6 50.8 6 2.67 6 -99.00 0 7.6930 33.4561 75.7 45.3 0.171 0.0 2.13 92.5 10 2 241 -99.00 0 2.092 0 34.5 0 49.6 0 2.62 0 -99.00 0 7.4421 33.5366 100.7 42.1 0.132 0.0 1.48 64.2 9 1 241 -99.00 0 1.418 0 37.0 0 56.7 0 2.82 0 -99.00 0 7.0552 33.7754