*2014/11/20 09:56:32.33 *IOS HEADER VERSION 1.10 2011/10/26 2011/10/26 *FILE START TIME : UTC 2009/05/30 01:26:41.000 TIME INCREMENT : 0 0 0 0.416667E-01 0 ! (day hr min sec ms) NUMBER OF RECORDS : 8 DATA DESCRIPTION : Bottle:Rosette:Up:Stop + CTD:Up FILE TYPE : ASCII CRC : 78CFC283 NUMBER OF CHANNELS : 25 $TABLE: CHANNELS ! No Name Units Minimum Maximum !--- ---------------------------- --------------- -------------- -------------- 1 Sample_Number n/a 186 193 2 Pressure decibar 5.9 127 3 Temperature:Primary 'deg C (ITS90)' 6.2582 11.3491 4 Transmissivity %/metre 22.5 57.7 5 Fluorescence:URU:Seapoint mg/m^3 0.157 5.634 6 PAR uE/m^2/sec 0 28.2 7 Salinity:T0:C0 PSS-78 31.6884 33.9508 8 Oxygen:Dissolved:SBE mL/L 1.8 7.81 9 Oxygen:Dissolved:SBE umol/kg 78.5 340.4 10 Bottle_Number n/a 1 8 11 Number_of_bin_records n/a 240 241 12 Salinity:Bottle PSS-78 31.6762 33.9471 13 Flag:Salinity:Bottle n/a 14 Chlorophyll:Extracted mg/m^3 2.76 7.74 15 Flag:Chlorophyll:Extracted n/a 16 Oxygen:Dissolved mL/L 1.779 7.758 17 Flag:Oxygen:Dissolved n/a 18 Nitrate_plus_Nitrite umol/L 0.1709 36.37718 19 Flag:Nitrate_plus_Nitrite n/a 20 Silicate umol/L 0.7 64.4 21 Flag:Silicate n/a 22 Phosphate umol/L 0.298175 2.705545 23 Flag:Phosphate n/a 24 Ammonium umol/L 0 0.21 25 Flag:Ammonium n/a $END $TABLE: CHANNEL DETAIL ! No Pad Start Width Format Type Decimal_Places !--- ---- ----- ----- ------ ---- -------------- 1 -99 ' ' 5 I I 0 2 -99 ' ' 7 F ' ' 1 3 -99 ' ' 9 F ' ' 4 4 -99 ' ' 6 F ' ' 1 5 -99 ' ' 8 F ' ' 3 6 -99 ' ' 7 F ' ' 1 7 -99 ' ' 9 F ' ' 4 8 -99 ' ' 7 F ' ' 2 9 -99 ' ' 6 F ' ' 1 10 -99 ' ' 3 I I 0 11 ' ' ' ' 5 I I 0 12 -99 ' ' 9 F R4 4 13 0 ' ' 3 NQ C ' ' 14 -99 ' ' 7 F R4 2 15 0 ' ' 3 NQ C ' ' 16 -99 ' ' 8 F R4 3 17 0 ' ' 3 NQ C ' ' 18 -99 ' ' 6 F R4 1 19 0 ' ' 3 NQ C ' ' 20 -99 ' ' 6 F R4 1 21 0 ' ' 3 NQ C ' ' 22 -99 ' ' 7 F R4 2 23 0 ' ' 3 NQ C ' ' 24 -99 ' ' 7 F R4 2 25 0 ' ' 3 NQ C ' ' $END $REMARKS Flag channels initialized with zeros. Non-zero values have the following significance: -------------------------------------------------------------------------------------- 1 = Sample for this measurement was drawn from water bottle but not analyzed (not normally used). 2 = Acceptable measurement (not normally used). 3 = Questionable measurement (no problem observed in sampling or analysis, but value is not trusted, nonetheless; includes outlyers). 4 = Bad measurement (known problem with sampling or analysis, but not serious enough to completely discard the value). 5 = Not reported (lost sample; unredeemably bad measurement). 6 = Mean of replicate measurements. 7 = Manual chromatographic peak measurement. 8 = Irregular digital chromatographic peak integration. 9 = Sample not drawn for this measurement from this bottle (not normally used). -------------------------------------------------------------------------------------- $END *ADMINISTRATION MISSION : 2009-08 AGENCY : IOS, Ocean Sciences Division, Sidney, B.C. COUNTRY : Canada PROJECT : La Perouse SCIENTIST : Yelland D. PLATFORM : John P. Tully *LOCATION GEOGRAPHIC AREA : WCVI STATION : LD 06B EVENT NUMBER : 60 LATITUDE : 48 46.17000 N ! (deg min) LONGITUDE : 126 10.17000 W ! (deg min) ALTIMETER (M) : 12.55 ! custom item $REMARKS Altimeter value is distance from bottom and is calculated as the median of the deepest 2 metres of data. $END *INSTRUMENT TYPE : Sea-Bird CTD MODEL : SBE-911plus SERIAL NUMBER : 0443 $TABLE: SENSORS ! Name Abs Depth Serial No ! ------------------------- -------------- ---------- temperature:primary ' ' 2038 conductivity:primary ' ' 2128 pressure ' ' 63507 temperature:secondary ' ' 2449 conductivity:secondary ' ' 2424 Fluorometer ' ' Seapoint transmissometer:primary ' ' 1005 Oxygen:SBE ' ' 0997 altimeter: ' ' ' ' irradiance:primary ' ' 4615 pH ' ' 0692 surface ' ' 'degrees = 0.0' $END $REMARKS SOFTWARE VERSION SEASAVE V 7.16 $END *HISTORY $TABLE: PROGRAMS ! Name Vers Date Time Recs In Recs Out ! ------------------------ ------ ---------- -------- --------- --------- SBE_IOS 3.1 2009/11/30 16:36:04 1227 1227 CLEAN 5.0.2 2009/11/30 16:51:22 ? ? ADDSAMP 3.4 2009/12/02 11:56:44 1227 1227 BINAVE 4.1.1 2009/12/02 11:56:57 1227 8 MERGE 3.3 2009/12/02 15:45:01 8 8 CLEAN 5.0.2 2009/12/02 15:45:09 ? ? CALIB 11.7 2009/12/08 16:43:55 8 8 SORT 3.5 2009/12/08 17:01:40 8 8 REMOVECH 8.0 2009/12/08 17:09:06 8 8 CHGUNITS 3.0 2009/12/08 17:15:57 8 8 REORDER 1.2.1 2009/12/08 17:17:53 ? ? HDREDIT2 2.5.1 2009/12/08 17:25:02 ? ? REMOVECH 8.0 2010/01/05 14:35:25 8 8 SORT 3.5 2010/01/05 14:47:44 8 8 MERGE 3.3 2010/01/05 14:48:21 8 8 CALIB 11.7 2010/08/18 13:37:45 8 8 HDREDIT2 2.5.1 2010/08/18 13:38:41 ? ? HDREDIT2 2.5.1 2010/09/02 14:06:13 ? ? CALIB 11.7 2013/06/04 13:12:05 8 8 HDREDIT2 2.6 2013/07/08 08:48:56 ? ? CHANGE_FLAGS 1.0 2013/07/29 14:31:06 8 8 CHANGE_CTD_CHANNEL_NAMES 1.0 2013/12/16 15:34:09 8 8 HDREDIT2 2.6 2013/12/18 13:29:01 ? ? CHANGE_FLAGS 2.0 2014/11/20 09:56:32 8 8 $END $REMARKS -CLEAN functions: 2009/11/30 16:50:45 20 Set event to last 4 characters of file name -The following ADDSAMP parameters were used: Sample Number Lookup File: Q:\Cruise_Data_Processing\2009-08\Processing\hydro\addsamp.csv Bottle Channel Name: Bottle_Number -The following BINAVE parameters were used: Bin channel = Bottle_Number Averaging interval = 1.00 Minimum bin value = 0.000 Average value was used Interpolated values were NOT used for empty bins Channel 'NUMBER_OF_BIN_RECORDS' was added to file. -The following MERGE parameters were used: 2009/12/02 15:44:58 2009/12/02 15:44:58 2009/12/02 15:44: Merge Channel: Sample_Number Merge Scheme Used: Add Secondary to Primary Overlap Scheme Used: Keep Primary Primary Channels to Include: ALL Secondary Channels to Include: Salinity:Bottle [ ], Flag:Salinity:Bottle [ ], Chlorophyll:Extracted [ ], Flag:Chlorophyll:Extracted [ ], Oxygen:Dissolved [ ], Flag:Oxygen:Dissolved [ ], Nitrate_plus_Nitrite [umol/L], Flag:Nitrate_plus_Nitrite [ ], Silicate [umol/L], Flag:Silicate [ ], Phosphate [umol/L], Flag:Phosphate [ ], Ammonium, Flag:Ammonium Primary file : Q:\Cruise_Data_Processing\2009-08\Processing\hydro\2009-08-0060.samavg Secondary file: Q:\Cruise_Data_Processing\2009-08\Processing\hydro\2009-08-0060.mrgcln1 -CLEAN functions: 2009/12/02 15:45:08 20 Remove Sea-Bird comments from the header. Remove remark heading: "Comments from secondary" -CALIB parameters: 2009/12/08 16:43:55 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = Q:\Cruise_Data_Processing\2009-08\Processing\doc\2009-08-recal1.ccf Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 16 Salinity:T0:C0 PSS-78 10 0.2000000E-01 0.1000000E+01 18 Oxygen:Dissolved:SBE mL/L 10 0.1980000E-01 0.1050900E+01 -SORT parameters: 2009/12/08 17:01:40 Sorted in ascending order of channel Pressure -REMOVECH 2009/12/08 17:09:06 11 channels removed. -CHANGE units: 'Oxygen:Dissolved:SBE' changed from mL/L to umol/kg -HEADER EDITS: 2009/12/08 17:25:02 Applied edit header: Q:\Cruise_Data_Processing\2009-08\Processing\doc\2009-08-bot-hdr.txt Channel 2: Pressure [decibar] Units: dbars ==> decibar Format: F10.3 ==> F7.1 Channel 5: Fluorescence:URU:Seapoint [mg/m^3] Name: Fluorescence:Seapoint ==> Fluorescence:URU:Seapoint Channel 6: PAR [uE/m^2/sec] Format: F11.3 ==> F7.1 Channel 8: Oxygen:Dissolved:SBE [mL/L] Format: F8.3 ==> F7.2 Channel 12: Salinity:Bottle [PSS-78] Units: ==> PSS-78 Channel 14: Chlorophyll:Extracted [mg/m^3] Units: ==> mg/m^3 Channel 16: Oxygen:Dissolved [mL/L] Units: ==> mL/L Format: f8.3 ==> F8.3 -REMOVECH 2010/01/05 14:35:25 2 channels removed. -SORT parameters: 2010/01/05 14:47:44 Sorted in ascending order of channel Sample_Number -The following MERGE parameters were used: 2010/01/05 14:48:17 2010/01/05 14:48:18 2010/01/05 14:48: Merge Channel: Sample_Number Merge Scheme Used: Add Secondary to Primary Overlap Scheme Used: Keep Primary Primary Channels to Include: ALL Secondary Channels to Include: Ammonium, Flag:Ammonium Primary file : Q:\Cruise_Data_Processing\2009-08\Processing\hydro\2009-08-0060.chesort Secondary file: Q:\Cruise_Data_Processing\2009-08\Processing\hydro\2009-08-0060.nh4 -CALIB parameters: 2010/08/18 13:37:45 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = Q:\Cruise_Data_Processing\Trans Cor\2009-08\DOC\2009-08-recal-tr.ccf Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 4 Transmissivity %/metre 10 0.0000000E+00 0.1247000E+01 -HEADER EDITS: 2010/08/18 13:38:41 Applied edit header: Q:\Cruise_Data_Processing\Trans Cor\2009-08\DOC\Trans_Correction1.TXT -HEADER EDITS: 2010/09/02 14:06:13 Channel 4: Transmissivity [%/metre] Format: F7.2 ==> F6.1 -CALIB parameters: 2013/06/04 13:12:05 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = C:\DATA\Nutrients\doc\Nutrients-recal1.ccf Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 18 Nitrate_plus_Nitrite umol/L 10 0.1709000E+00 0.9812000E+00 22 Phosphate umol/L 10 0.4530000E-01 0.1011500E+01 -HEADER EDITS: 2013/07/08 08:48:56 Applied edit header: C:\DATA\Nutrients\doc\headedit-correction.txt -HEADER EDITS: 2013/12/18 13:29:01 Channel 24: Ammonium [umol/L] Units: ==> umol/L $END *COMMENTS Note that this file contains data from 2009-08-0060 and 2009-08-0061. There was a computer problem but all the data come from the same upcast. Sample_Number 186: Salinity: Unstable readings Sample_Number 193: Salinity: Unstable readings Sample_Number 191: DO: Ambiguous endpoint but looks ok Sample_Number 193: DO: Duplicate taken but bad endpoint Analysis methods: ----------------- Chlorophyll samples were analyzed at sea using a Chemistry Turner Designs 10AU fluorometer which was calibrated on May 13, 2009 using pure chlorophyll a. Chlorophyll precision was determined by analyzing replicate samples drawn from one Niskin. For details see worksheet “Precision” in file QF2009-08CHL.xls. Oxygen samples were analyzed at sea using an automated titration system consisting of a Brinkman Dosimat (model 665) and a PC 950 Colorimeter. For information on precision see file 2009-08_oxy_duplicates.xls. Salinity samples were collected in glass bottles and analyzed at IOS on a Guildline model 8400B Autosal standardized with IAPSO standard seawater. See file 2009-08-salinity-duplicates.xls for information on AUtosal precision. Nutrient samples were collected in plastic tubes and analyzed fresh at sea using an Astoria autoanalyzer following methods described in Barwell-Clarke and Whitney (1996). For details on nutrient duplicates and precision see file QF2009-08nuts.xls. Ammonia samples were analysed fresh at sea using a TD700 fluorometer. References: 1. Carpenter, J.H. 1965. The Chesapeake Bay Institute Technique for the Winkler Dissolved Oxygen Method. Limmnol. & Oceanogr., 10: 141-143. 2. J. Barwell-Clarke and F. Whitney. 1996. Institute of Ocean Sciences Nutrient Methods and Analysis. Canadian Technical Report of Hydrography and Ocean Sciences, No. 182, 43 pp. ----------------------------------------------------------------------------------- ********************************************************************************* Transmissometer #1005DR was calibrated in March 2008, and drifted significantly but steadily until July 2009; then a sudden shift occurred, so that maximum values between September 2009 and July 2010 were very low, ~25%/m. In August 2010 a study was made of transmissivity that led to a decision to apply post-processing corrections to all cruises between March 2008 and June 2010. Transmissivity data from this cruise were corrected by multiplying the original values by a correction factor, which was based on assumptions that deep offshore transmissivity from a June 2009 cruise should be about 62%/m and that drift was linear with time between March 2008 and July 2009. The corrections produced reasonable results for all cruises in that time period. For details on how the correction factor was derived see: OSD_Data_Archive:\Cruise_Data\DOCUMENTS\Transmissometer 1005DR Corrections.doc These data should be considered estimates. ********************************************************************************* July 2013: A correction has been applied to Nitrate_plus_Nitrite and Phosphate data from deep-water cruises analyzed at IOS between 2009 and 2012. For details see the following report: Corrections to Nitrate and Phosphate for Deep-Water Cruises from 2009 to 2012.pdf which is stored in folder: \\Cruise_Data\DOCUMENTS\Analysis Reference Papers *CALIBRATION $TABLE: CORRECTED CHANNELS ! Name Units Fmla Pad Coefficients ! ---------------------- --------- ---- ------ ------------ Salinity:T0:C0 PSS-78 10 -99 () (0.2E-01 1) Oxygen:Dissolved:SBE mL/L 10 -99 () (0.198E-01 1.0509) Transmissivity %/metre 10 -99 () (0 1.247) Nitrate_plus_Nitrite umol/L 10 -99 () (0.1709 0.9812) Phosphate umol/L 10 -99 () (0.453E-01 1.0115) $END !-1-- --2--- ---3---- --4-- ---5--- --6--- ---7---- --8--- --9-- 10 -11- ---12--- 13 --14-- 15 ---16-- 17 --18- 19 --20- 21 --22-- 23 --24-- 25 !Samp Pressu Temperat Trans Fluores PAR Salinity Oxygen Oxyge Bo Numb Salinity Fl Chloro Fl Oxygen: Fl Nitra Fl Silic Fl Phosph Fl Ammoni Fl !le_ re ure: missi cence: :T0:C0 : n: tt er_o :Bottle ag phyll: ag Dissolv ag te_ ag ate ag ate ag um ag !Numb Primary vity URU: Dissol Disso ~u ~bin ~o Extrac ~a ed ~o plus_ ~t ~i ~p ~o !er Seapoin ved: lved: mb _rec tt ted ct lv Nitri ri ca ha ni ! t SBE SBE er ords le ed ed te te te te um !---- ------ -------- ----- ------- ------ -------- ------ ----- -- ---- -------- -- ------ -- ------- -- ----- -- ----- -- ------ -- ------ -- *END OF HEADER 186 127.0 6.2582 50.4 0.157 0.0 33.9508 1.80 78.5 1 241 33.9471 3 -99.00 0 1.779 0 36.4 0 64.4 0 2.71 0 -99.00 0 187 101.2 7.0035 56.0 0.168 0.0 33.7087 2.21 96.0 2 241 33.7043 0 -99.00 0 2.187 0 33.6 0 51.5 0 2.54 0 -99.00 0 188 77.2 7.0525 57.7 0.174 0.0 33.5834 2.46 106.9 3 241 -99.0000 0 -99.00 0 2.580 0 32.3 0 48.4 0 2.45 0 -99.00 0 189 50.9 7.3183 57.1 0.249 0.0 33.0040 3.64 158.6 4 241 -99.0000 0 -99.00 0 3.570 0 28.3 0 41.0 0 2.25 0 -99.00 0 190 31.3 8.1219 55.1 0.730 0.3 32.2663 5.83 253.8 5 240 -99.0000 0 -99.00 0 5.830 0 12.2 0 17.7 0 1.39 0 -99.00 0 191 20.2 10.2131 25.9 5.634 2.0 31.8139 7.59 330.7 6 241 -99.0000 0 7.74 6 7.569 0 2.6 6 2.8 6 0.59 6 0.21 6 192 11.6 11.0511 22.5 4.396 9.7 31.7432 7.81 340.4 7 241 -99.0000 0 4.51 6 7.758 0 0.2 0 0.7 0 0.33 0 0.00 6 193 5.9 11.3491 23.7 2.790 28.2 31.6884 7.57 330.2 8 241 31.6762 3 2.76 6 7.466 0 0.2 0 0.7 0 0.30 0 0.00 6