*2014/11/20 09:56:32.03 *IOS HEADER VERSION 1.10 2011/10/26 2011/10/26 *FILE START TIME : UTC 2009/05/29 10:04:32.000 TIME INCREMENT : 0 0 0 0.416667E-01 0 ! (day hr min sec ms) NUMBER OF RECORDS : 11 DATA DESCRIPTION : Bottle:Rosette:Up:Stop + CTD:Up FILE TYPE : ASCII CRC : 211F2EE2 NUMBER OF CHANNELS : 24 $TABLE: CHANNELS ! No Name Units Minimum Maximum !--- ---------------------------- --------------- -------------- -------------- 1 Sample_Number n/a 140 150 2 Pressure decibar 6 197.1 3 Temperature:Primary 'deg C (ITS90)' 6.1949 11.079 4 Transmissivity %/metre 18.1 61.7 5 Fluorescence:URU:Seapoint mg/m^3 0.127 5.426 6 Salinity:T0:C0 PSS-78 31.7806 33.9639 7 Oxygen:Dissolved:SBE mL/L 1.73 8.12 8 Oxygen:Dissolved:SBE umol/kg 75.1 353.7 9 Bottle_Number n/a 1 11 10 Number_of_bin_records n/a 241 241 11 Salinity:Bottle PSS-78 31.7687 33.9526 12 Flag:Salinity:Bottle n/a 13 Chlorophyll:Extracted mg/m^3 2.78 6.05 14 Flag:Chlorophyll:Extracted n/a 15 Oxygen:Dissolved mL/L 1.722 7.754 16 Flag:Oxygen:Dissolved n/a 17 Nitrate_plus_Nitrite umol/L 0.1709 37.4565 18 Flag:Nitrate_plus_Nitrite n/a 19 Silicate umol/L 3.7 62 20 Flag:Silicate n/a 21 Phosphate umol/L 0.358865 2.71566 22 Flag:Phosphate n/a 23 Ammonium umol/L 0 1.26 24 Flag:Ammonium n/a $END $TABLE: CHANNEL DETAIL ! No Pad Start Width Format Type Decimal_Places !--- ---- ----- ----- ------ ---- -------------- 1 -99 ' ' 5 I I 0 2 -99 ' ' 7 F ' ' 1 3 -99 ' ' 9 F ' ' 4 4 -99 ' ' 6 F ' ' 1 5 -99 ' ' 8 F ' ' 3 6 -99 ' ' 9 F ' ' 4 7 -99 ' ' 7 F ' ' 2 8 -99 ' ' 6 F ' ' 1 9 -99 ' ' 3 I I 0 10 ' ' ' ' 5 I I 0 11 -99 ' ' 9 F R4 4 12 0 ' ' 3 NQ C ' ' 13 -99 ' ' 7 F R4 2 14 0 ' ' 3 NQ C ' ' 15 -99 ' ' 8 F R4 3 16 0 ' ' 3 NQ C ' ' 17 -99 ' ' 6 F R4 1 18 0 ' ' 3 NQ C ' ' 19 -99 ' ' 6 F R4 1 20 0 ' ' 3 NQ C ' ' 21 -99 ' ' 7 F R4 2 22 0 ' ' 3 NQ C ' ' 23 -99 ' ' 7 F R4 2 24 0 ' ' 3 NQ C ' ' $END $REMARKS Flag channels initialized with zeros. Non-zero values have the following significance: -------------------------------------------------------------------------------------- 1 = Sample for this measurement was drawn from water bottle but not analyzed (not normally used). 2 = Acceptable measurement (not normally used). 3 = Questionable measurement (no problem observed in sampling or analysis, but value is not trusted, nonetheless; includes outlyers). 4 = Bad measurement (known problem with sampling or analysis, but not serious enough to completely discard the value). 5 = Not reported (lost sample; unredeemably bad measurement). 6 = Mean of replicate measurements. 7 = Manual chromatographic peak measurement. 8 = Irregular digital chromatographic peak integration. 9 = Sample not drawn for this measurement from this bottle (not normally used). -------------------------------------------------------------------------------------- $END *ADMINISTRATION MISSION : 2009-08 AGENCY : IOS, Ocean Sciences Division, Sidney, B.C. COUNTRY : Canada PROJECT : La Perouse SCIENTIST : Yelland D. PLATFORM : John P. Tully *LOCATION GEOGRAPHIC AREA : WCVI STATION : A1 EVENT NUMBER : 45 LATITUDE : 48 29.32000 N ! (deg min) LONGITUDE : 126 7.10000 W ! (deg min) WATER DEPTH : 201 ALTIMETER (M) : 6.4 ! custom item $REMARKS Altimeter value is distance from bottom and is calculated as the median of the deepest 2 metres of data. $END *INSTRUMENT TYPE : Sea-Bird CTD MODEL : SBE-911plus SERIAL NUMBER : 0443 $TABLE: SENSORS ! Name Abs Depth Serial No ! ------------------------- -------------- ---------- temperature:primary ' ' 2038 conductivity:primary ' ' 2128 pressure ' ' 63507 temperature:secondary ' ' 2449 conductivity:secondary ' ' 2424 Fluorometer ' ' Seapoint transmissometer:primary ' ' 1005 Oxygen:SBE ' ' 0997 altimeter: ' ' ' ' irradiance:primary ' ' 4615 pH ' ' 0692 surface ' ' 'degrees = 0.0' $END $REMARKS SOFTWARE VERSION SEASAVE V 7.16 $END *HISTORY $TABLE: PROGRAMS ! Name Vers Date Time Recs In Recs Out ! ------------------------ ------ ---------- -------- --------- --------- SBE_IOS 3.1 2009/11/30 16:37:27 2651 2651 CTDEDIT 4.61 2009/11/30 16:40:42 2651 2651 CLEAN 5.0.2 2009/11/30 16:51:13 ? ? ADDSAMP 3.4 2009/11/30 17:13:02 2651 2651 BINAVE 4.1.1 2009/11/30 17:13:54 2651 11 MERGE 3.3 2009/12/02 15:45:00 11 11 CLEAN 5.0.2 2009/12/02 15:45:09 ? ? CALIB 11.7 2009/12/08 16:43:54 11 11 SORT 3.5 2009/12/08 17:01:39 11 11 REMOVECH 8.0 2009/12/08 17:05:45 11 11 CHGUNITS 3.0 2009/12/08 17:15:57 11 11 REORDER 1.2.1 2009/12/08 17:17:52 ? ? HDREDIT2 2.5.1 2009/12/08 17:25:01 ? ? REMOVECH 8.0 2010/01/05 14:35:24 11 11 SORT 3.5 2010/01/05 14:47:43 11 11 MERGE 3.3 2010/01/05 14:48:19 11 11 CALIB 11.7 2010/08/18 13:37:44 11 11 HDREDIT2 2.5.1 2010/08/18 13:38:41 ? ? HDREDIT2 2.5.1 2010/09/02 14:06:12 ? ? CALIB 11.7 2013/06/04 13:12:04 11 11 HDREDIT2 2.6 2013/07/08 08:48:56 ? ? CHANGE_FLAGS 1.0 2013/07/29 14:31:06 11 11 CHANGE_CTD_CHANNEL_NAMES 1.0 2013/12/16 15:34:09 11 11 HDREDIT2 2.6 2013/12/18 13:29:01 ? ? CHANGE_FLAGS 2.0 2014/11/20 09:56:32 11 11 $END $REMARKS -CTDEDIT 2009/11/30 16:40:42 10 changes in channel Salinity:T0:C0 16 changes in channel Salinity:T1:C1 -CLEAN functions: 2009/11/30 16:50:45 20 Set event to last 4 characters of file name -The following ADDSAMP parameters were used: Sample Number Lookup File: Q:\Cruise_Data_Processing\2009-08\Processing\hydro\addsamp.csv Bottle Channel Name: Bottle_Number -The following BINAVE parameters were used: Bin channel = Bottle_Number Averaging interval = 1.00 Minimum bin value = 0.000 Average value was used Interpolated values were NOT used for empty bins Channel 'NUMBER_OF_BIN_RECORDS' was added to file. -The following MERGE parameters were used: 2009/12/02 15:44:58 2009/12/02 15:44:58 2009/12/02 15:44: Merge Channel: Sample_Number Merge Scheme Used: Add Secondary to Primary Overlap Scheme Used: Keep Primary Primary Channels to Include: ALL Secondary Channels to Include: Salinity:Bottle [ ], Flag:Salinity:Bottle [ ], Chlorophyll:Extracted [ ], Flag:Chlorophyll:Extracted [ ], Oxygen:Dissolved [ ], Flag:Oxygen:Dissolved [ ], Nitrate_plus_Nitrite [umol/L], Flag:Nitrate_plus_Nitrite [ ], Silicate [umol/L], Flag:Silicate [ ], Phosphate [umol/L], Flag:Phosphate [ ], Ammonium, Flag:Ammonium Primary file : Q:\Cruise_Data_Processing\2009-08\Processing\hydro\2009-08-0045.samavg Secondary file: Q:\Cruise_Data_Processing\2009-08\Processing\hydro\2009-08-0045.mrgcln1 -CLEAN functions: 2009/12/02 15:45:08 20 Remove Sea-Bird comments from the header. Remove remark heading: "Comments from secondary" -CALIB parameters: 2009/12/08 16:43:54 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = Q:\Cruise_Data_Processing\2009-08\Processing\doc\2009-08-recal1.ccf Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 16 Salinity:T0:C0 PSS-78 10 0.2000000E-01 0.1000000E+01 18 Oxygen:Dissolved:SBE mL/L 10 0.1980000E-01 0.1050900E+01 -SORT parameters: 2009/12/08 17:01:39 Sorted in ascending order of channel Pressure -REMOVECH 2009/12/08 17:05:45 12 channels removed. -CHANGE units: 'Oxygen:Dissolved:SBE' changed from mL/L to umol/kg -HEADER EDITS: 2009/12/08 17:25:01 Applied edit header: Q:\Cruise_Data_Processing\2009-08\Processing\doc\2009-08-bot-hdr.txt Channel 2: Pressure [decibar] Units: dbars ==> decibar Format: F10.3 ==> F7.1 Channel 5: Fluorescence:URU:Seapoint [mg/m^3] Name: Fluorescence:Seapoint ==> Fluorescence:URU:Seapoint Channel 7: Oxygen:Dissolved:SBE [mL/L] Format: F8.3 ==> F7.2 Channel 11: Salinity:Bottle [PSS-78] Units: ==> PSS-78 Channel 13: Chlorophyll:Extracted [mg/m^3] Units: ==> mg/m^3 Channel 15: Oxygen:Dissolved [mL/L] Units: ==> mL/L Format: f8.3 ==> F8.3 -REMOVECH 2010/01/05 14:35:24 2 channels removed. -SORT parameters: 2010/01/05 14:47:43 Sorted in ascending order of channel Sample_Number -The following MERGE parameters were used: 2010/01/05 14:48:17 2010/01/05 14:48:18 2010/01/05 14:48: Merge Channel: Sample_Number Merge Scheme Used: Add Secondary to Primary Overlap Scheme Used: Keep Primary Primary Channels to Include: ALL Secondary Channels to Include: Ammonium, Flag:Ammonium Primary file : Q:\Cruise_Data_Processing\2009-08\Processing\hydro\2009-08-0045.chesort Secondary file: Q:\Cruise_Data_Processing\2009-08\Processing\hydro\2009-08-0045.nh4 -CALIB parameters: 2010/08/18 13:37:44 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = Q:\Cruise_Data_Processing\Trans Cor\2009-08\DOC\2009-08-recal-tr.ccf Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 4 Transmissivity %/metre 10 0.0000000E+00 0.1247000E+01 -HEADER EDITS: 2010/08/18 13:38:41 Applied edit header: Q:\Cruise_Data_Processing\Trans Cor\2009-08\DOC\Trans_Correction1.TXT -HEADER EDITS: 2010/09/02 14:06:12 Channel 4: Transmissivity [%/metre] Format: F7.2 ==> F6.1 -CALIB parameters: 2013/06/04 13:12:04 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = C:\DATA\Nutrients\doc\Nutrients-recal1.ccf Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 17 Nitrate_plus_Nitrite umol/L 10 0.1709000E+00 0.9812000E+00 21 Phosphate umol/L 10 0.4530000E-01 0.1011500E+01 -HEADER EDITS: 2013/07/08 08:48:56 Applied edit header: C:\DATA\Nutrients\doc\headedit-correction.txt -HEADER EDITS: 2013/12/18 13:29:01 Channel 23: Ammonium [umol/L] Units: ==> umol/L $END *COMMENTS CTDEDIT was used to clean primary salinity for bottle #10 and secondary salinity for bottle #9. Sample_Number 141: Salinity: Unstable readings Sample_Number 149: CHL: dup 2.98 Not used Sample_Number 150: CHL: duplicates not great 4.98 & 6.31 Sample_Number 150: DO: Colorimeter problem Analysis methods: ----------------- Chlorophyll samples were analyzed at sea using a Chemistry Turner Designs 10AU fluorometer which was calibrated on May 13, 2009 using pure chlorophyll a. Chlorophyll precision was determined by analyzing replicate samples drawn from one Niskin. For details see worksheet “Precision” in file QF2009-08CHL.xls. Oxygen samples were analyzed at sea using an automated titration system consisting of a Brinkman Dosimat (model 665) and a PC 950 Colorimeter. For information on precision see file 2009-08_oxy_duplicates.xls. Salinity samples were collected in glass bottles and analyzed at IOS on a Guildline model 8400B Autosal standardized with IAPSO standard seawater. See file 2009-08-salinity-duplicates.xls for information on AUtosal precision. Nutrient samples were collected in plastic tubes and analyzed fresh at sea using an Astoria autoanalyzer following methods described in Barwell-Clarke and Whitney (1996). For details on nutrient duplicates and precision see file QF2009-08nuts.xls. Ammonia samples were analysed fresh at sea using a TD700 fluorometer. References: 1. Carpenter, J.H. 1965. The Chesapeake Bay Institute Technique for the Winkler Dissolved Oxygen Method. Limmnol. & Oceanogr., 10: 141-143. 2. J. Barwell-Clarke and F. Whitney. 1996. Institute of Ocean Sciences Nutrient Methods and Analysis. Canadian Technical Report of Hydrography and Ocean Sciences, No. 182, 43 pp. ----------------------------------------------------------------------------------- ********************************************************************************* Transmissometer #1005DR was calibrated in March 2008, and drifted significantly but steadily until July 2009; then a sudden shift occurred, so that maximum values between September 2009 and July 2010 were very low, ~25%/m. In August 2010 a study was made of transmissivity that led to a decision to apply post-processing corrections to all cruises between March 2008 and June 2010. Transmissivity data from this cruise were corrected by multiplying the original values by a correction factor, which was based on assumptions that deep offshore transmissivity from a June 2009 cruise should be about 62%/m and that drift was linear with time between March 2008 and July 2009. The corrections produced reasonable results for all cruises in that time period. For details on how the correction factor was derived see: OSD_Data_Archive:\Cruise_Data\DOCUMENTS\Transmissometer 1005DR Corrections.doc These data should be considered estimates. ********************************************************************************* July 2013: A correction has been applied to Nitrate_plus_Nitrite and Phosphate data from deep-water cruises analyzed at IOS between 2009 and 2012. For details see the following report: Corrections to Nitrate and Phosphate for Deep-Water Cruises from 2009 to 2012.pdf which is stored in folder: \\Cruise_Data\DOCUMENTS\Analysis Reference Papers *CALIBRATION $TABLE: CORRECTED CHANNELS ! Name Units Fmla Pad Coefficients ! ---------------------- --------- ---- ------ ------------ Salinity:T0:C0 PSS-78 10 -99 () (0.2E-01 1) Oxygen:Dissolved:SBE mL/L 10 -99 () (0.198E-01 1.0509) Transmissivity %/metre 10 -99 () (0 1.247) Nitrate_plus_Nitrite umol/L 10 -99 () (0.1709 0.9812) Phosphate umol/L 10 -99 () (0.453E-01 1.0115) $END !-1-- --2--- ---3---- --4-- ---5--- ---6---- --7--- --8-- 9- -10- ---11--- 12 --13-- 14 ---15-- 16 --17- 18 --19- 20 --21-- 22 --23-- 24 !Samp Pressu Temperat Trans Fluores Salinity Oxygen Oxyge Bo Numb Salinity Fl Chloro Fl Oxygen: Fl Nitra Fl Silic Fl Phosph Fl Ammoni Fl !le_ re ure: missi cence: :T0:C0 : n: tt er_o :Bottle ag phyll: ag Dissolv ag te_ ag ate ag ate ag um ag !Numb Primary vity URU: Dissol Disso ~u ~bin ~o Extrac ~a ed ~o plus_ ~t ~i ~p ~o !er Seapoin ved: lved: mb _rec tt ted ct lv Nitri ri ca ha ni ! t SBE SBE er ords le ed ed te te te te um !---- ------ -------- ----- ------- -------- ------ ----- -- ---- -------- -- ------ -- ------- -- ----- -- ----- -- ------ -- ------ -- *END OF HEADER 140 197.1 6.1949 58.0 0.132 33.9639 1.73 75.1 1 241 -99.0000 0 -99.00 0 1.722 0 37.5 0 62.0 0 2.72 0 -99.00 0 141 175.8 6.2498 59.2 0.130 33.9559 1.82 79.1 2 241 33.9526 3 -99.00 0 1.802 0 37.0 0 60.3 0 2.68 0 -99.00 0 142 150.2 6.6527 60.6 0.131 33.9091 2.38 103.3 3 241 33.9073 0 -99.00 0 2.373 0 34.0 0 51.1 0 2.45 0 -99.00 0 143 124.7 6.8488 61.7 0.127 33.8577 2.92 126.9 4 241 -99.0000 0 -99.00 0 2.892 6 31.9 0 45.3 0 2.28 0 -99.00 0 144 100.6 6.9735 61.6 0.128 33.7605 3.51 152.7 5 241 -99.0000 0 -99.00 0 3.503 0 28.9 0 39.2 0 2.09 0 -99.00 0 145 75.1 6.9941 60.5 0.147 33.4555 3.60 156.8 6 241 -99.0000 0 -99.00 0 3.563 0 28.1 0 38.5 0 2.12 0 -99.00 0 146 50.6 7.0209 60.6 0.177 32.6943 5.79 252.1 7 241 -99.0000 0 -99.00 0 5.716 0 17.4 6 22.1 6 1.49 6 -99.00 0 147 31.9 7.6935 58.6 0.276 32.4084 5.60 243.9 8 241 -99.0000 0 -99.00 0 5.610 0 14.6 0 21.5 0 1.47 0 -99.00 0 148 20.8 9.5227 44.1 1.842 31.9683 6.57 286.1 9 241 -99.0000 0 2.78 6 6.673 0 5.3 0 9.6 0 0.84 0 1.26 6 149 10.3 10.3809 23.9 5.426 31.8007 7.58 330.3 10 241 -99.0000 0 6.05 0 7.754 0 0.2 0 3.7 0 0.38 0 0.00 6 150 6.0 11.0790 18.1 5.172 31.7806 8.12 353.7 11 241 31.7687 0 5.64 36 -99.000 5 0.2 0 4.3 0 0.36 0 0.00 6