*2014/11/20 09:56:19.99 *IOS HEADER VERSION 1.10 2011/10/26 2011/10/26 *FILE START TIME : UTC 2008/08/28 01:52:44.000 TIME INCREMENT : 0 0 0 0.416667E-01 0 ! (day hr min sec ms) NUMBER OF RECORDS : 1 DATA DESCRIPTION : Bottle:Rosette:Up:Stop + CTD:Up FILE TYPE : ASCII CRC : F8E07055 NUMBER OF CHANNELS : 21 $TABLE: CHANNELS ! No Name Units Minimum Maximum !--- ---------------------------- --------------- -------------- -------------- 1 Sample_Number n/a 731 731 2 Pressure decibar 4.488 4.488 3 Temperature:Primary 'deg C (ITS90)' 13.0649 13.0649 4 Transmissivity %/metre 36.6 36.6 5 Fluorescence:URU:Seapoint mg/m^3 1.999 1.999 6 Oxygen:Dissolved:SBE mL/L 6.024 6.024 7 PAR uE/m^2/sec 6.746 6.746 8 Salinity:T0:C0 PSS-78 30.8373 30.8373 9 Bottle_Number n/a 1 1 10 Number_of_bin_records n/a 241 241 11 Salinity:Bottle PSS-78 30.8532 30.8532 12 Flag:Salinity:Bottle n/a 13 Chlorophyll:Extracted mg/m^3 3.39 3.39 14 Flag:Chlorophyll:Extracted n/a 15 Nitrate_plus_Nitrite umol/L 3 3 16 Flag:Nitrate_plus_Nitrite n/a 17 Silicate umol/L 12.5 12.5 18 Flag:Silicate n/a 19 Phosphate umol/L 0.61 0.61 20 Flag:Phosphate n/a 21 Oxygen:Dissolved:SBE umol/kg 262.8416 262.8416 $END $TABLE: CHANNEL DETAIL ! No Pad Start Width Format Type Decimal_Places !--- ---- ----- ----- ------ ---- -------------- 1 -99 ' ' 5 I I 0 2 -99 ' ' 7 F ' ' 1 3 -99 ' ' 9 F ' ' 4 4 -99 ' ' 6 F ' ' 1 5 -99 ' ' 8 F ' ' 3 6 -99 ' ' 7 F ' ' 2 7 -99 ' ' 7 F ' ' 1 8 -99 ' ' 9 F ' ' 4 9 -99 ' ' 3 I I 0 10 ' ' ' ' 5 I I 0 11 -99 ' ' 9 F R4 4 12 0 ' ' 3 NQ C ' ' 13 -99 ' ' 7 F R4 2 14 0 ' ' 3 NQ C ' ' 15 -99 ' ' 6 F R4 1 16 0 ' ' 3 NQ C ' ' 17 -99 ' ' 6 F R4 1 18 0 ' ' 3 NQ C ' ' 19 -99 ' ' 7 F R4 2 20 0 ' ' 3 NQ C ' ' 21 -99 ' ' 6 F ' ' 1 $END $REMARKS Flag channels initialized with zeros. Non-zero values have the following significance: -------------------------------------------------------------------------------------- 1 = Sample for this measurement was drawn from water bottle but not analyzed (not normally used). 2 = Acceptable measurement (not normally used). 3 = Questionable measurement (no problem observed in sampling or analysis, but value is not trusted, nonetheless; includes outlyers). 4 = Bad measurement (known problem with sampling or analysis, but not serious enough to completely discard the value). 5 = Not reported (lost sample; unredeemably bad measurement). 6 = Mean of replicate measurements. 7 = Manual chromatographic peak measurement. 8 = Irregular digital chromatographic peak integration. 9 = Sample not drawn for this measurement from this bottle (not normally used). -------------------------------------------------------------------------------------- $END *ADMINISTRATION MISSION : 2008-27 AGENCY : IOS, Ocean Sciences Division, Sidney, B.C. COUNTRY : Canada PROJECT : Line P SCIENTIST : Robert M. PLATFORM : John P. Tully *LOCATION GEOGRAPHIC AREA : North-East Pacific STATION : M5 EVENT NUMBER : 144 LATITUDE : 51 43.47000 N ! (deg min) LONGITUDE : 128 3.49000 W ! (deg min) WATER DEPTH : 432 *INSTRUMENT TYPE : Sea-Bird CTD MODEL : SBE-911plus SERIAL NUMBER : 0443 $TABLE: SENSORS ! Name Abs Depth Serial No ! ------------------------- -------------- ---------- temperature:primary ' ' 4054 conductivity:primary ' ' 1766 pressure ' ' 63507 temperature:secondary ' ' 4700 conductivity:secondary ' ' 2173 Fluorometer ' ' Seapoint transmissometer:primary ' ' 1005DR Oxygen:SBE ' ' 1176 altimeter: ' ' ' ' irradiance:primary ' ' 4656 $END $REMARKS SOFTWARE VERSION SEASAVE V 7.16 $END *HISTORY $TABLE: PROGRAMS ! Name Vers Date Time Recs In Recs Out ! ------------------------ ------ ---------- -------- --------- --------- SBE_IOS 3.1 2008/11/09 15:51:32 241 241 CLEAN 5.0.2 2008/11/09 15:53:29 ? ? ADDSAMP 3.4 2008/11/09 15:59:34 241 241 BINAVE 4.1.1 2008/11/09 16:02:38 241 1 MERGE 3.3 2008/11/17 17:01:43 1 1 CLEAN 5.0.2 2008/11/17 18:50:27 ? ? CALIB 11.7 2008/11/25 17:39:51 1 1 SORT 3.5 2008/11/26 15:50:38 1 1 REMOVECH 8.0 2008/11/26 16:02:01 1 1 CHGUNITS 3.0 2008/11/26 17:09:33 1 1 HDREDIT2 2.5.1 2008/11/27 11:55:22 ? ? HDREDIT2 2.5.1 2009/04/17 11:39:40 ? ? CHANGE_FLAGS 1.0 2013/07/16 11:49:15 1 1 CHANGE_CTD_CHANNEL_NAMES 1.0 2013/12/16 15:33:53 1 1 CHANGE_FLAGS 2.0 2014/11/20 09:56:19 1 1 $END $REMARKS -CLEAN functions: 2008/11/09 15:51:43 20 Set event to last 4 characters of file name -The following ADDSAMP parameters were used: Sample Number Lookup File: Q:\Cruise_Data_Processing\2008-27\Processing\test\addsamp.csv Bottle Channel Name: Bottle_Number -The following BINAVE parameters were used: Bin channel = Bottle_Number Averaging interval = 1.00 Minimum bin value = 0.000 Average value was used Interpolated values were NOT used for empty bins Channel 'NUMBER_OF_BIN_RECORDS' was added to file. -The following MERGE parameters were used: 2008/11/17 17:01:34 2008/11/17 17:01:34 2008/11/17 17:01: Merge Channel: Sample_Number Merge Scheme Used: Add Secondary to Primary Overlap Scheme Used: Keep Primary Primary Channels to Include: ALL Secondary Channels to Include: Salinity:Bottle, Flag:Salinity:Bottle, Chlorophyll:Extracted, Flag:Chlorophyll:Extracted, Oxygen:Dissolved, Flag:Oxygen:Dissolved, Nitrate_plus_Nitrite, Flag:Nitrate_plus_Nitrite, Silicate, Flag:Silicate, Phosphate, Flag:Phosphate, Dimethyl_Sulphide, Flag:Dimethyl_Sulphide Primary file : Q:\Cruise_Data_Processing\2008-27\Processing\hydro\2008-27-0144.samavg Secondary file: Q:\Cruise_Data_Processing\2008-27\Processing\hydro\2008-27-0144.mrgcln1 -CLEAN functions: 2008/11/17 18:50:21 20 Remove Sea-Bird comments from the header. Remove remark heading: "Comments from secondary" -CALIB parameters: 2008/11/25 17:39:51 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = Q:\Cruise_Data_Processing\2008-27\Processing\doc\2008-27-recal1.ccf Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 11 Oxygen:Dissolved:SBE mL/L 10 0.2000000E-02 0.1071000E+01 17 Salinity:T1:C1 PSS-78 10 0.1600000E-02 0.1000000E+01 -SORT parameters: 2008/11/26 15:50:38 Sorted in ascending order of channel Press* -REMOVECH 2008/11/26 16:02:01 10 channels removed. -CHANGE units: 'Oxygen:Dissolved:SBE' changed from mL/L to umol/kg -HEADER EDITS: 2008/11/27 11:55:22 Applied edit header: Q:\Cruise_Data_Processing\2008-27\Processing\doc\2008-27-bot-hdr.txt Channel 2: Pressure [decibar] Units: dbars ==> decibar Format: F10.3 ==> F7.1 Channel 5: Fluorescence:URU:Seapoint [mg/m^3] Name: Fluorescence:Seapoint ==> Fluorescence:URU:Seapoint Channel 6: Oxygen:Dissolved:SBE [mL/L] Format: F8.3 ==> F7.2 Channel 7: PAR [uE/m^2/sec] Format: F11.3 ==> F7.1 Channel 11: Salinity:Bottle [PSS-78] Units: ==> PSS-78 Channel 13: Chlorophyll:Extracted [mg/m^3] Units: ==> mg/m^3 -HEADER EDITS: 2009/04/17 11:39:40 Applied edit header: C:\My Documents\sample headers\add-comment.hdr $END *COMMENTS Sample_Number 731: Salinity: analyzed on Portasal at sea Analysis methods: ----------------- Chlorophyll samples were analyzed at sea using a Chemistry Turner 10 AU fluorometer which was calibrated on April 23, 2008 using pure chlorophyll a. Chlorophyll precision was determined by analyzing replicate samples drawn from one Niskin. For details see worksheet “Precision” in file QF 2008-27CHL M.xls. Oxygen samples were analyzed on an automated Winkler titration system following the procedures of Carpenter (1965). Samples were analyzed at sea using an automated titration system consisting of a Brinkman Dosimat (model 665) and a PC 910 Colorimeter. For details on precision see file 2008-27-duplicates-DO.xls. Salinity samples were collected in glass bottles and analyzed on a Guildline model 8400B Autosal at IOS or a Guildline Portasal 8410A at sea. Salinometers are standardized with IAPSO standard seawater. See file 2008-27-sal-duplicates.xls for information on precision and note the warning below. Nutrient samples were analyzed from frozen samples using an Astoria system following methods described in Barwell-Clarke and Whitney (1996). For details on nutrient duplicates and precision see file QF2008-27nuts M.xls. DMS data are provided by C.S. Wong and researchers are asked to contact him before using them. The minimum detectable level for DMS is 0.10 nM, so “0” values should be interpreted as <0.10. For details on the collection and analysis of the DMS data see file 2008-27 DMS Report.doc. References: 1. Carpenter, J.H. 1965. The Chesapeake Bay Institute Technique for the Winkler Dissolved Oxygen Method. Limmnol. & Oceanogr., 10: 141-143. 2. J. Barwell-Clarke and F. Whitney. 1996. Institute of Ocean Sciences Nutrient Methods and Analysis. Canadian Technical Report of Hydrography and Ocean Sciences, No. 182, 43 pp. WARNING: There were problems with both salinometers. Variations in the performance of the Portasal were fairly random from day to day, while the Autosal results were fairly steady for the analysis of samples from the first half of the cruise, but there may have been a shift later and the analyst reported problems with stability near the end. Studying multiple bottles fired at a single stop suggests that the Autosal is good to ±0.005 and the scatter in COMPARE looks similar. For the Portasal the multiple bottle study suggests the data is good to ±0.008, but the larger comparison between bottles and CTD showed more scatter, ~ ±0.015. Duplicate studies suggest that the Portasal was reading lower than the Autosal by ~0.007 with a standard deviation of 0.003, but the wider comparisons of bottles and CTD data suggests the Portasal is lower than the Autosal by ~0.003. Given the uncertainty in the comparisons no attempt was made to make the Autosal and POrtasal results match. Similarly, the only recalibration to CTD salinity was to make the secondary salinity match the primary salinity. Recalibration may be applied later if factory recalibration indicates that there was significant drift. Autosal values have been selected for Salinity:Bottle where possible. Where there are no Autosal values, the Portasal values were used, but were all flagged "c", except for those that had more severe flags attached for other reasons. NOTE: April 2009 Post-cruise calibrations show primary CTD salinity is within 0.001. *CALIBRATION $TABLE: CORRECTED CHANNELS ! Name Units Fmla Pad Coefficients ! ---------------------- -------- ---- ------ ------------ Oxygen:Dissolved:SBE mL/L 10 -99 () (0.2E-02 1.071) Salinity:T1:C1 PSS-78 10 -99 () (0.16E-02 1) $END !-1-- --2--- ---3---- --4-- ---5--- --6--- --7--- ---8---- 9- -10- ---11--- 12 --13-- 14 --15- 16 --17- 18 --19-- 20 --21- !Samp Pressu Temperat Trans Fluores Oxygen PAR Salinity Bo Numb Salinity Fl Chloro Fl Nitra Fl Silic Fl Phosph Fl Oxyge !le_ re ure: missi cence: : :T0:C0 tt er_o :Bottle ag phyll: ag te_ ag ate ag ate ag n: !Numb Primary vity URU: Dissol ~u ~bin ~o Extrac ~a plus_ ~t ~i ~p Disso !er Seapoin ved: mb _rec tt ted ct Nitri ri ca ha lved: ! t SBE er ords le ed te te te te SBE !---- ------ -------- ----- ------- ------ ------ -------- -- ---- -------- -- ------ -- ----- -- ----- -- ------ -- ----- *END OF HEADER 731 4.5 13.0649 36.6 1.999 6.02 6.7 30.8373 1 241 30.8532 3 3.39 0 3.0 0 12.5 0 0.61 0 262.8