*2014/11/20 09:56:17.60 *IOS HEADER VERSION 1.10 2011/10/26 2011/10/26 *FILE START TIME : UTC 2008/08/15 17:43:41.000 TIME INCREMENT : 0 0 0 0.416667E-01 0 ! (day hr min sec ms) NUMBER OF RECORDS : 23 DATA DESCRIPTION : Bottle:Rosette:Up:Stop + CTD:Up FILE TYPE : ASCII CRC : 6FCF4C56 NUMBER OF CHANNELS : 24 $TABLE: CHANNELS ! No Name Units Minimum Maximum !--- ---------------------------- --------------- -------------- -------------- 1 Sample_Number n/a 122 144 2 Pressure decibar 4.849 2001.203 3 Temperature:Primary 'deg C (ITS90)' 1.9437 15.6722 4 Transmissivity %/metre 41.9 58.4 5 Fluorescence:URU:Seapoint mg/m^3 0.79E-01 2.421 6 Oxygen:Dissolved:SBE mL/L 0.208 6.791 7 Salinity:T0:C0 PSS-78 32.336 34.5866 8 Bottle_Number n/a 1 23 9 Number_of_bin_records n/a 72 241 10 Salinity:Bottle PSS-78 32.3438 34.5902 11 Flag:Salinity:Bottle n/a 12 Chlorophyll:Extracted mg/m^3 0.4E-01 0.81 13 Flag:Chlorophyll:Extracted n/a 14 Oxygen:Dissolved mL/L -0.13E-01 6.178 15 Flag:Oxygen:Dissolved n/a 16 Nitrate_plus_Nitrite umol/L 0.1 45 17 Flag:Nitrate_plus_Nitrite n/a 18 Silicate umol/L 3.7 170.8 19 Flag:Silicate n/a 20 Phosphate umol/L 0.42 3.28 21 Flag:Phosphate n/a 22 Dimethyl_Sulphide nmol/L 31.21 31.21 23 Flag:Dimethyl_Sulphide n/a 24 Oxygen:Dissolved:SBE umol/kg 9.039492 295.7437 $END $TABLE: CHANNEL DETAIL ! No Pad Start Width Format Type Decimal_Places !--- ---- ----- ----- ------ ---- -------------- 1 -99 ' ' 5 I I 0 2 -99 ' ' 7 F ' ' 1 3 -99 ' ' 9 F ' ' 4 4 -99 ' ' 6 F ' ' 1 5 -99 ' ' 8 F ' ' 3 6 -99 ' ' 7 F ' ' 2 7 -99 ' ' 9 F ' ' 4 8 -99 ' ' 3 I I 0 9 ' ' ' ' 5 I I 0 10 -99 ' ' 9 F R4 4 11 0 ' ' 3 NQ C ' ' 12 -99 ' ' 7 F R4 2 13 0 ' ' 3 NQ C ' ' 14 -99 ' ' 8 F ' ' 3 15 0 ' ' 3 NQ C ' ' 16 -99 ' ' 6 F R4 1 17 0 ' ' 3 NQ C ' ' 18 -99 ' ' 6 F R4 1 19 0 ' ' 3 NQ C ' ' 20 -99 ' ' 7 F R4 2 21 0 ' ' 3 NQ C ' ' 22 -99 ' ' 7 F R4 2 23 0 ' ' 3 NQ C ' ' 24 -99 ' ' 6 F ' ' 1 $END $REMARKS Flag channels initialized with zeros. Non-zero values have the following significance: -------------------------------------------------------------------------------------- 1 = Sample for this measurement was drawn from water bottle but not analyzed (not normally used). 2 = Acceptable measurement (not normally used). 3 = Questionable measurement (no problem observed in sampling or analysis, but value is not trusted, nonetheless; includes outlyers). 4 = Bad measurement (known problem with sampling or analysis, but not serious enough to completely discard the value). 5 = Not reported (lost sample; unredeemably bad measurement). 6 = Mean of replicate measurements. 7 = Manual chromatographic peak measurement. 8 = Irregular digital chromatographic peak integration. 9 = Sample not drawn for this measurement from this bottle (not normally used). -------------------------------------------------------------------------------------- $END *ADMINISTRATION MISSION : 2008-27 AGENCY : IOS, Ocean Sciences Division, Sidney, B.C. COUNTRY : Canada PROJECT : Line P SCIENTIST : Robert M. PLATFORM : John P. Tully *LOCATION GEOGRAPHIC AREA : North-East Pacific STATION : P8 EVENT NUMBER : 24 LATITUDE : 48 48.95000 N ! (deg min) LONGITUDE : 128 39.93000 W ! (deg min) WATER DEPTH : 2519 *INSTRUMENT TYPE : Sea-Bird CTD MODEL : SBE-911plus SERIAL NUMBER : 0443 $TABLE: SENSORS ! Name Abs Depth Serial No ! ------------------------- -------------- ---------- temperature:primary ' ' 4054 conductivity:primary ' ' 1766 pressure ' ' 63507 temperature:secondary ' ' 4700 conductivity:secondary ' ' 2173 Fluorometer ' ' Seapoint transmissometer:primary ' ' 1005DR Oxygen:SBE ' ' 1176 altimeter: ' ' ' ' irradiance:primary ' ' 4656 $END $REMARKS SOFTWARE VERSION SEASAVE V 7.16 $END *HISTORY $TABLE: PROGRAMS ! Name Vers Date Time Recs In Recs Out ! ------------------------ ------ ---------- -------- --------- --------- SBE_IOS 3.1 2008/11/09 15:49:58 5098 5098 CLEAN 5.0.2 2008/11/09 15:52:00 ? ? ADDSAMP 3.4 2008/11/09 15:58:10 5098 5098 BINAVE 4.1.1 2008/11/09 16:01:56 5098 23 MERGE 3.3 2008/11/17 17:01:35 23 23 CLEAN 5.0.2 2008/11/17 18:50:22 ? ? CALIB 11.7 2008/11/25 17:39:32 23 23 SORT 3.5 2008/11/26 15:50:27 23 23 REMOVECH 8.0 2008/11/26 16:07:55 23 23 CHGUNITS 3.0 2008/11/26 17:09:28 23 23 HDREDIT2 2.5.1 2008/11/27 11:55:15 ? ? HDREDIT2 2.5.1 2009/04/17 11:39:37 ? ? CHANGE_FLAGS 1.0 2013/07/16 11:49:12 23 23 CHANGE_CTD_CHANNEL_NAMES 1.0 2013/12/16 15:33:52 23 23 CHANGE_FLAGS 2.0 2014/11/20 09:56:17 23 23 $END $REMARKS -CLEAN functions: 2008/11/09 15:51:43 20 Set event to last 4 characters of file name -The following ADDSAMP parameters were used: Sample Number Lookup File: Q:\Cruise_Data_Processing\2008-27\Processing\test\addsamp.csv Bottle Channel Name: Bottle_Number -The following BINAVE parameters were used: Bin channel = Bottle_Number Averaging interval = 1.00 Minimum bin value = 0.000 Average value was used Interpolated values were NOT used for empty bins Channel 'NUMBER_OF_BIN_RECORDS' was added to file. -The following MERGE parameters were used: 2008/11/17 17:01:34 2008/11/17 17:01:34 2008/11/17 17:01: Merge Channel: Sample_Number Merge Scheme Used: Add Secondary to Primary Overlap Scheme Used: Keep Primary Primary Channels to Include: ALL Secondary Channels to Include: Salinity:Bottle, Flag:Salinity:Bottle, Chlorophyll:Extracted, Flag:Chlorophyll:Extracted, Oxygen:Dissolved, Flag:Oxygen:Dissolved, Nitrate_plus_Nitrite, Flag:Nitrate_plus_Nitrite, Silicate, Flag:Silicate, Phosphate, Flag:Phosphate, Dimethyl_Sulphide, Flag:Dimethyl_Sulphide Primary file : Q:\Cruise_Data_Processing\2008-27\Processing\hydro\2008-27-0024.samavg Secondary file: Q:\Cruise_Data_Processing\2008-27\Processing\hydro\2008-27-0024.mrgcln1 -CLEAN functions: 2008/11/17 18:50:21 20 Remove Sea-Bird comments from the header. Remove remark heading: "Comments from secondary" -CALIB parameters: 2008/11/25 17:39:32 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = Q:\Cruise_Data_Processing\2008-27\Processing\doc\2008-27-recal1.ccf Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 11 Oxygen:Dissolved:SBE mL/L 10 0.2000000E-02 0.1071000E+01 17 Salinity:T1:C1 PSS-78 10 0.1600000E-02 0.1000000E+01 -SORT parameters: 2008/11/26 15:50:27 Sorted in ascending order of channel Press* -REMOVECH 2008/11/26 16:07:55 11 channels removed. -CHANGE units: 'Oxygen:Dissolved:SBE' changed from mL/L to umol/kg -HEADER EDITS: 2008/11/27 11:55:15 Applied edit header: Q:\Cruise_Data_Processing\2008-27\Processing\doc\2008-27-bot-hdr.txt Channel 2: Pressure [decibar] Units: dbars ==> decibar Format: F10.3 ==> F7.1 Channel 5: Fluorescence:URU:Seapoint [mg/m^3] Name: Fluorescence:Seapoint ==> Fluorescence:URU:Seapoint Channel 6: Oxygen:Dissolved:SBE [mL/L] Format: F8.3 ==> F7.2 Channel 10: Salinity:Bottle [PSS-78] Units: ==> PSS-78 Channel 12: Chlorophyll:Extracted [mg/m^3] Units: ==> mg/m^3 -HEADER EDITS: 2009/04/17 11:39:37 Applied edit header: C:\My Documents\sample headers\add-comment.hdr $END *COMMENTS Sample_Number 129: Salinity: analyzed on Portasal at sea Dissolved Oxygen Samples 122,123,124: values taken from the rosette sheet as they were not in the oxygen file. The values look fine in COMPARE, so flags were removed. Dissolved Oxygen Sample 125: negative value; from oxygen minimum zone but not anoixc zone Dissolved Oxygen Sample 126: negative value; from oxygen minimum zone but not anoixc zone Dissolved Oxygen Sample 127: Program crashed; outlier compared to CTD DO. Dissolved Oxygen Sample 137: Program crashed and outlier in COMPARE. Dissolved oxygen sample 138: Severe Outlier in COMPARE. Dissolved Oxygen Sample 144: particles in the flask. Sample_Number 136: All Samples: Niskin did not close Analysis methods: ----------------- Chlorophyll samples were analyzed at sea using a Chemistry Turner 10 AU fluorometer which was calibrated on April 23, 2008 using pure chlorophyll a. Chlorophyll precision was determined by analyzing replicate samples drawn from one Niskin. For details see worksheet “Precision” in file QF 2008-27CHL M.xls. Oxygen samples were analyzed on an automated Winkler titration system following the procedures of Carpenter (1965). Samples were analyzed at sea using an automated titration system consisting of a Brinkman Dosimat (model 665) and a PC 910 Colorimeter. For details on precision see file 2008-27-duplicates-DO.xls. Salinity samples were collected in glass bottles and analyzed on a Guildline model 8400B Autosal at IOS or a Guildline Portasal 8410A at sea. Salinometers are standardized with IAPSO standard seawater. See file 2008-27-sal-duplicates.xls for information on precision and note the warning below. Nutrient samples were analyzed from frozen samples using an Astoria system following methods described in Barwell-Clarke and Whitney (1996). For details on nutrient duplicates and precision see file QF2008-27nuts M.xls. DMS data are provided by C.S. Wong and researchers are asked to contact him before using them. The minimum detectable level for DMS is 0.10 nM, so “0” values should be interpreted as <0.10. For details on the collection and analysis of the DMS data see file 2008-27 DMS Report.doc. References: 1. Carpenter, J.H. 1965. The Chesapeake Bay Institute Technique for the Winkler Dissolved Oxygen Method. Limmnol. & Oceanogr., 10: 141-143. 2. J. Barwell-Clarke and F. Whitney. 1996. Institute of Ocean Sciences Nutrient Methods and Analysis. Canadian Technical Report of Hydrography and Ocean Sciences, No. 182, 43 pp. WARNING: There were problems with both salinometers. Variations in the performance of the Portasal were fairly random from day to day, while the Autosal results were fairly steady for the analysis of samples from the first half of the cruise, but there may have been a shift later and the analyst reported problems with stability near the end. Studying multiple bottles fired at a single stop suggests that the Autosal is good to ±0.005 and the scatter in COMPARE looks similar. For the Portasal the multiple bottle study suggests the data is good to ±0.008, but the larger comparison between bottles and CTD showed more scatter, ~ ±0.015. Duplicate studies suggest that the Portasal was reading lower than the Autosal by ~0.007 with a standard deviation of 0.003, but the wider comparisons of bottles and CTD data suggests the Portasal is lower than the Autosal by ~0.003. Given the uncertainty in the comparisons no attempt was made to make the Autosal and POrtasal results match. Similarly, the only recalibration to CTD salinity was to make the secondary salinity match the primary salinity. Recalibration may be applied later if factory recalibration indicates that there was significant drift. Autosal values have been selected for Salinity:Bottle where possible. Where there are no Autosal values, the Portasal values were used, but were all flagged "c", except for those that had more severe flags attached for other reasons. NOTE: April 2009 Post-cruise calibrations show primary CTD salinity is within 0.001. *CALIBRATION $TABLE: CORRECTED CHANNELS ! Name Units Fmla Pad Coefficients ! ---------------------- -------- ---- ------ ------------ Oxygen:Dissolved:SBE mL/L 10 -99 () (0.2E-02 1.071) Salinity:T1:C1 PSS-78 10 -99 () (0.16E-02 1) $END !-1-- --2--- ---3---- --4-- ---5--- --6--- ---7---- 8- -9-- ---10--- 11 --12-- 13 ---14-- 15 --16- 17 --18- 19 --20-- 21 --22-- 23 --24- !Samp Pressu Temperat Trans Fluores Oxygen Salinity Bo Numb Salinity Fl Chloro Fl Oxygen: Fl Nitra Fl Silic Fl Phosph Fl Dimeth Fl Oxyge !le_ re ure: missi cence: : :T0:C0 tt er_o :Bottle ag phyll: ag Dissolv ag te_ ag ate ag ate ag yl_ ag n: !Numb Primary vity URU: Dissol ~u ~bin ~o Extrac ~a ed ~o plus_ ~t ~i ~p Sulphi ~p Disso !er Seapoin ved: mb _rec tt ted ct lv Nitri ri ca ha de hi lved: ! t SBE er ords le ed ed te te te te de SBE !---- ------ -------- ----- ------- ------ -------- -- ---- -------- -- ------ -- ------- -- ----- -- ----- -- ------ -- ------ -- ----- *END OF HEADER 144 4.8 15.6722 41.9 0.857 6.11 32.3360 23 241 32.3438 0 0.60 0 6.143 0 0.2 0 3.7 0 0.42 0 -99.00 0 266.5 142 9.8 15.5894 42.2 0.958 6.14 32.3374 21 127 32.3494 6 -99.00 0 -99.000 0 -99.0 0 -99.0 0 -99.00 0 -99.00 0 267.7 143 9.9 15.4584 41.9 0.993 6.14 32.3448 22 240 32.3478 0 -99.00 0 -99.000 0 -99.0 0 -99.0 0 -99.00 0 -99.00 0 267.8 139 9.9 15.4914 42.1 1.007 6.16 32.3418 18 226 32.3480 0 0.64 0 6.178 0 0.1 0 3.8 0 0.43 0 -99.00 0 268.4 141 10.0 15.5149 42.1 0.984 6.16 32.3410 20 95 -99.0000 0 -99.00 0 -99.000 0 -99.0 0 -99.0 0 -99.00 0 -99.00 0 268.4 140 10.1 15.4695 42.0 1.132 6.18 32.3433 19 72 32.3500 0 -99.00 0 -99.000 0 -99.0 0 -99.0 0 -99.00 0 31.21 0 269.7 138 24.3 13.9863 44.4 2.421 6.33 32.4144 17 241 32.4265 0 0.81 0 -99.000 5 1.4 0 5.5 0 0.57 0 -99.00 0 275.7 137 49.7 9.2675 54.8 0.740 6.79 32.4872 16 241 32.4933 0 0.32 0 -99.000 5 6.2 0 10.4 0 0.93 0 -99.00 0 295.7 136 75.5 7.5105 57.1 0.264 6.74 32.5208 15 241 -99.0000 9 -99.00 9 -99.000 9 -99.0 9 -99.0 9 -99.00 9 -99.00 0 293.4 135 100.4 7.0868 57.8 0.110 5.96 32.7394 14 241 32.7374 0 0.04 0 6.028 0 14.3 0 16.5 0 1.32 0 -99.00 0 259.6 134 125.7 6.9686 57.8 0.093 4.91 33.3562 13 241 33.3441 0 -99.00 0 4.986 0 21.0 0 26.5 0 1.61 0 -99.00 0 213.5 133 151.5 6.9183 57.5 0.085 4.15 33.6845 12 241 33.6821 0 -99.00 0 4.158 0 25.3 0 34.4 0 1.83 0 -99.00 0 180.4 132 176.4 6.6604 57.3 0.081 3.72 33.8092 11 241 33.8117 0 -99.00 0 3.712 0 27.7 0 40.6 0 1.96 0 -99.00 0 161.8 131 200.6 6.3659 57.3 0.080 3.40 33.8481 10 241 33.8508 0 -99.00 0 3.378 0 29.8 6 46.1 6 2.10 6 -99.00 0 148.0 130 249.9 5.9004 57.3 0.082 3.05 33.8669 9 241 33.8703 0 -99.00 0 3.030 6 32.3 0 53.5 0 2.26 0 -99.00 0 132.8 129 301.1 5.4882 57.5 0.081 2.30 33.8995 8 241 33.8941 3 -99.00 0 2.468 0 36.0 0 63.0 0 2.51 0 -99.00 0 99.8 128 406.4 4.9193 58.0 0.082 1.34 33.9674 7 241 33.9734 0 -99.00 0 1.385 0 40.5 0 77.9 0 2.84 0 -99.00 0 58.4 127 591.5 4.3575 58.4 0.085 0.44 34.1509 6 241 34.1573 0 -99.00 0 -99.000 5 44.0 0 101.7 0 3.16 0 -99.00 0 19.2 126 802.9 4.0276 58.0 0.085 0.21 34.3150 5 241 34.3186 0 -99.00 0 -99.000 5 44.8 0 117.8 0 3.28 0 -99.00 0 9.0 125 985.3 3.5301 58.0 0.085 0.26 34.3925 4 241 34.3971 0 -99.00 0 -99.000 5 44.9 0 131.4 0 3.28 0 -99.00 0 11.3 124 1247.9 2.9923 58.0 0.084 0.43 34.4646 3 241 34.4689 6 -99.00 0 0.420 0 45.0 0 145.1 0 3.25 0 -99.00 0 18.8 123 1501.1 2.4764 58.2 0.085 0.67 34.5090 2 241 34.5113 0 -99.00 0 0.606 0 44.3 0 160.5 0 3.18 0 -99.00 0 29.2 122 2001.2 1.9437 58.4 0.079 1.39 34.5866 1 241 34.5902 0 -99.00 0 1.335 0 42.7 0 170.8 0 3.03 0 -99.00 0 60.4