*2014/11/20 09:56:14.61 *IOS HEADER VERSION 1.10 2011/10/26 2011/10/26 *FILE START TIME : UTC 2008/06/02 19:00:11.000 TIME INCREMENT : 0 0 0 0.416667E-01 0 ! (day hr min sec ms) NUMBER OF RECORDS : 1 DATA DESCRIPTION : Bottle:Rosette:Up:Stop + CTD:Up FILE TYPE : ASCII CRC : C32C9A57 NUMBER OF CHANNELS : 20 $TABLE: CHANNELS ! No Name Units Minimum Maximum !--- ---------------------------- --------------- -------------- -------------- 1 Sample_Number n/a 125 125 2 Pressure decibar 5.047 5.047 3 Temperature:Primary 'deg C (ITS90)' 9.9156 9.9156 4 Transmissivity %/metre 48.6 48.6 5 Fluorescence:URU:Seapoint mg/m^3 0.661 0.661 6 Oxygen:Dissolved:SBE mL/L 6.968 6.968 7 Oxygen:Dissolved:SBE umol/kg 303.4888 303.4888 8 Salinity:T0:C0 PSS-78 32.4615 32.4615 9 Bottle_Number n/a 1 1 10 Number_of_bin_records n/a 121 121 11 Salinity:Bottle PSS-78 32.4625 32.4625 12 Flag:Salinity:Bottle n/a 13 Chlorophyll:Extracted mg/m^3 0.46 0.46 14 Flag:Chlorophyll:Extracted n/a 15 Nitrate_plus_Nitrite umol/L 6.2 6.2 16 Flag:Nitrate_plus_Nitrite n/a 17 Silicate umol/L 9.5 9.5 18 Flag:Silicate n/a 19 Phosphate umol/L 0.85 0.85 20 Flag:Phosphate n/a $END $TABLE: CHANNEL DETAIL ! No Pad Start Width Format Type Decimal_Places !--- ---- ----- ----- ------ ---- -------------- 1 -99 ' ' 5 I I 0 2 -99 ' ' 7 F ' ' 1 3 -99 ' ' 9 F ' ' 4 4 -99 ' ' 6 F ' ' 1 5 -99 ' ' 8 F ' ' 3 6 -99 ' ' 7 F ' ' 2 7 -99 ' ' 6 F ' ' 1 8 -99 ' ' 9 F ' ' 4 9 -99 ' ' 3 I I 0 10 ' ' ' ' 5 I I 0 11 -99 ' ' 9 F R4 4 12 0 ' ' 3 NQ C ' ' 13 -99 ' ' 7 F R4 2 14 0 ' ' 3 NQ C ' ' 15 -99 ' ' 6 F R4 1 16 0 ' ' 3 NQ C ' ' 17 -99 ' ' 6 F R4 1 18 0 ' ' 3 NQ C ' ' 19 -99 ' ' 7 F R4 2 20 0 ' ' 3 NQ C ' ' $END $REMARKS Flag channels initialized with zeros. Non-zero values have the following significance: -------------------------------------------------------------------------------------- 1 = Sample for this measurement was drawn from water bottle but not analyzed (not normally used). 2 = Acceptable measurement (not normally used). 3 = Questionable measurement (no problem observed in sampling or analysis, but value is not trusted, nonetheless; includes outlyers). 4 = Bad measurement (known problem with sampling or analysis, but not serious enough to completely discard the value). 5 = Not reported (lost sample; unredeemably bad measurement). 6 = Mean of replicate measurements. 7 = Manual chromatographic peak measurement. 8 = Irregular digital chromatographic peak integration. 9 = Sample not drawn for this measurement from this bottle (not normally used). -------------------------------------------------------------------------------------- $END *ADMINISTRATION MISSION : 2008-26 AGENCY : IOS, Ocean Sciences Division, Sidney, B.C. COUNTRY : Canada PROJECT : Line P SCIENTIST : Robert M. PLATFORM : John P. Tully *LOCATION GEOGRAPHIC AREA : North-East Pacific STATION : P7 EVENT NUMBER : 17 LATITUDE : 48 46.61000 N ! (deg min) LONGITUDE : 128 9.94000 W ! (deg min) ALTIMETER (M) : 1.86 ! custom item $REMARKS Altimeter value is distance from bottom and is calculated as the median of the deepest 2 metres of data. $END *INSTRUMENT TYPE : Sea-Bird CTD MODEL : SBE-911plus SERIAL NUMBER : 0443 $TABLE: SENSORS ! Name Abs Depth Serial No ! ------------------------- -------------- ---------- temperature:primary ' ' 4054 conductivity:primary ' ' 1766 pressure ' ' 63507 temperature:secondary ' ' 4700 conductivity:secondary ' ' 2173 Fluorometer ' ' Seapoint transmissometer:primary ' ' 1005DR Oxygen:SBE ' ' 1176 altimeter: ' ' ' ' irradiance:primary ' ' 4656 $END $REMARKS SOFTWARE VERSION SEASAVE V 7.16 $END *HISTORY $TABLE: PROGRAMS ! Name Vers Date Time Recs In Recs Out ! ------------------------ ------ ---------- -------- --------- --------- SBE_IOS 3.1 2008/06/25 15:55:46 121 121 CLEAN 5.0.2 2008/06/25 15:57:14 ? ? ADDSAMP 3.4 2008/07/02 16:58:07 121 121 BINAVE 4.1.1 2008/11/06 14:39:30 121 1 MERGE 3.3 2008/11/06 14:50:39 1 1 CLEAN 5.0.2 2008/11/06 14:50:52 ? ? CALIB 11.7 2008/11/06 14:57:45 1 1 SORT 3.5 2008/11/06 14:58:05 1 1 REMOVECH 8.0 2008/11/06 15:00:03 1 1 CHGUNITS 3.0 2008/11/06 15:01:04 1 1 REORDER 1.2.1 2008/11/18 14:11:42 ? ? HDREDIT2 2.5.1 2008/11/18 14:12:58 ? ? HDREDIT2 2.5.1 2011/07/04 15:00:17 ? ? HDREDIT2 2.5.1 2011/07/05 08:40:28 ? ? CHANGE_FLAGS 1.0 2013/07/16 11:49:10 1 1 CHANGE_CTD_CHANNEL_NAMES 1.0 2013/12/16 15:33:50 1 1 HDREDIT2 2.6 2013/12/18 14:58:57 ? ? CHANGE_FLAGS 2.0 2014/11/20 09:56:14 1 1 $END $REMARKS -CLEAN functions: 2008/06/25 15:57:03 20 Set event to last 4 characters of file name -The following ADDSAMP parameters were used: Sample Number Lookup File: Q:\Cruise_Data_Processing\2008-26\Processing\hydro\addsamp.csv Bottle Channel Name: Bottle_Number -The following BINAVE parameters were used: Bin channel = Bottle_Number Averaging interval = 1.00 Minimum bin value = 0.000 Average value was used Interpolated values were NOT used for empty bins Channel 'NUMBER_OF_BIN_RECORDS' was added to file. -The following MERGE parameters were used: 2008/11/06 14:50:37 2008/11/06 14:50:37 2008/11/06 14:50: Merge Channel: Sample_Number Merge Scheme Used: Add Secondary to Primary Overlap Scheme Used: Keep Primary Primary Channels to Include: ALL Secondary Channels to Include: Salinity:Bottle, Flag:Salinity:Bottle, Chlorophyll:Extracted, Flag:Chlorophyll:Extracted, Oxygen:Dissolved, Flag:Oxygen:Dissolved, Nitrate_plus_Nitrite, Flag:Nitrate_plus_Nitrite, Silicate, Flag:Silicate, Phosphate, Flag:Phosphate, Dimethyl_Sulphide, Flag:Dimethyl_Sulphide Primary file : Q:\Cruise_Data_Processing\2008-26\Processing\hydro\2008-26-0017.samavg Secondary file: Q:\Cruise_Data_Processing\2008-26\Processing\hydro\2008-26-0017.mrgcln1 -CLEAN functions: 2008/11/06 14:50:51 20 Remove Sea-Bird comments from the header. Remove remark heading: "Comments from secondary" -CALIB parameters: 2008/11/06 14:57:45 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = Q:\Cruise_Data_Processing\2008-26\Processing\doc\2008-26-recal1.ccf Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 11 Oxygen:Dissolved:SBE mL/L 10 -0.1000000E-01 0.1070800E+01 16 Salinity:T0:C0 PSS-78 10 0.3000000E-02 0.1000000E+01 -SORT parameters: 2008/11/06 14:58:05 Sorted in ascending order of channel Press* -REMOVECH 2008/11/06 15:00:03 11 channels removed. -CHANGE units: 'Oxygen:Dissolved:SBE' changed from mL/L to umol/kg -HEADER EDITS: 2008/11/18 14:12:58 Applied edit header: Q:\Cruise_Data_Processing\2008-26\Processing\doc\2008-26-bot-hdr.txt Channel 2: Pressure [decibar] Units: dbars ==> decibar Format: F10.3 ==> F7.1 Channel 5: Fluorescence:URU:Seapoint [mg/m^3] Name: Fluorescence:Seapoint ==> Fluorescence:URU:Seapoint Channel 6: Oxygen:Dissolved:SBE [mL/L] Format: F8.3 ==> F7.2 Channel 11: Salinity:Bottle [PSS-78] Units: ==> PSS-78 -HEADER EDITS: 2011/07/04 15:00:17 - none. -HEADER EDITS: 2011/07/05 08:40:28 Channel 13: Chlorophyll:Extracted [mg/m^3] Units: umol/L ==> mg/m^3 -HEADER EDITS: 2013/12/18 14:58:57 - none. $END *COMMENTS Sample_Number 125: Salinity: Portasal used for analysis Analysis methods: ----------------- Chlorophyll samples were analyzed at sea using a Chemistry Turner Designs fluorometer which was calibrated in May 2007 using pure chlorophyll a. Chlorophyll precision was determined by analyzing replicate samples drawn from one Niskin. For details see worksheet “Precision” in file QF 2008-26CHL.xls. Oxygen samples were analyzed on an automated Winkler titration system following the procedures of Carpenter (1965). Samples were analyzed at sea using an automated titration system consisting of a Brinkman Dosimat (model 665) and a PC 900 Colorimeter. For details on precision see file 2008-26-duplicates-DO.xls. Salinity samples were collected in glass bottles and analyzed on a Guildline model 8400B Autosal or a Guildline Portasal 8410A. Salinometers are standardized with IAPSO standard seawater. See file 2008-26-sal-duplicates.xls for information on precision, and note the warning given below. Nutrient samples were collected in plastic tubes and analyzed fresh at sea using a Technicon AAII autoanalyzer following methods described in Barwell-Clarke and Whitney (1996). For details on nutrient duplicates and precision see file QF 2008-26nuts.xls. DMS data are provided by C.S. Wong and researchers are asked to contact him before using them. The minimum detectable level for DMS is 0.10 nM, so “0” values should be interpreted as <0.10. For details on the collection and analysis of the DMS data see file 2008-26 DMS Report.doc. References: 1. Carpenter, J.H. 1965. The Chesapeake Bay Institute Technique for the Winkler Dissolved Oxygen Method. Limmnol. & Oceanogr., 10: 141-143. 2. J. Barwell-Clarke and F. Whitney. 1996. Institute of Ocean Sciences Nutrient Methods and Analysis. Canadian Technical Report of Hydrography and Ocean Sciences, No. 182, 43 pp. WARNING: The salinity analyses done on a Portasal salinometer at sea are considered unreliable. Many duplicate samples were run using an Autosal at IOS and the Portasal. The results showed that the Portasal read much lower than the Autosal for those samples analyzed on the Portasal on June 5th. For other days the Portasal was low by an average of 0.0016 but there was a lot of noise in the comparison with many values within 0.001 of the Autosal, while others looked unstable. (For more detail see file 2008-26-bottle-salinity-port-auto-dups.xls.) Autosal values have been selected for Salinity:Bottle where possible. Where there are no Autosal values, the Portasal values were used, but were all flagged "c", except for those from June 5th which have been flagged "d". *CALIBRATION $TABLE: CORRECTED CHANNELS ! Name Units Fmla Pad Coefficients ! ---------------------- -------- ---- ------ ------------ Oxygen:Dissolved:SBE mL/L 10 -99 () (-0.1E-01 1.0708) Salinity:T0:C0 PSS-78 10 -99 () (0.3E-02 1) $END !-1-- --2--- ---3---- --4-- ---5--- --6--- --7-- ---8---- 9- -10- ---11--- 12 --13-- 14 --15- 16 --17- 18 --19-- 20 !Samp Pressu Temperat Trans Fluores Oxygen Oxyge Salinity Bo Numb Salinity Fl Chloro Fl Nitra Fl Silic Fl Phosph Fl !le_ re ure: missi cence: : n: :T0:C0 tt er_o :Bottle ag phyll: ag te_ ag ate ag ate ag !Numb Primary vity URU: Dissol Disso ~u ~bin ~o Extrac ~a plus_ ~t ~i ~p !er Seapoin ved: lved: mb _rec tt ted ct Nitri ri ca ha ! t SBE SBE er ords le ed te te te te !---- ------ -------- ----- ------- ------ ----- -------- -- ---- -------- -- ------ -- ----- -- ----- -- ------ -- *END OF HEADER 125 5.0 9.9156 48.6 0.661 6.97 303.5 32.4615 1 121 32.4625 3 0.46 0 6.2 0 9.5 0 0.85 0