*2014/11/20 09:55:45.96 *IOS HEADER VERSION 1.10 2011/10/26 2011/10/26 *FILE START TIME : UTC 2007/09/09 00:43:50.000 TIME INCREMENT : 0 0 0 0.416667E-01 0 ! (day hr min sec ms) NUMBER OF RECORDS : 6 DATA DESCRIPTION : Bottle:Rosette:Up:Stop + CTD:Up FILE TYPE : ASCII CRC : 533AEC3 NUMBER OF CHANNELS : 25 $TABLE: CHANNELS ! No Name Units Minimum Maximum !--- ---------------------------- --------------- -------------- -------------- 1 Sample_Number n/a 9425 9430 2 Pressure decibar 5.814 59.304 3 Temperature:Secondary 'deg C (ITS90)' 7.51 13.1667 4 Transmissivity %/metre 26.7 55.3 5 Fluorescence:URU:Seapoint mg/m^3 0.122 3.68 6 Oxygen:Dissolved:SBE mL/L 3.651 6.347 7 Oxygen:Dissolved:SBE umol/kg 158.9314 277.2094 8 PAR uE/m^2/sec 0.167 89.111 9 Salinity:T1:C1 PSS-78 29.5519 32.7075 10 Bottle_Number n/a 1 6 11 Number_of_bin_records n/a 121 121 12 Salinity:Bottle PSS-78 29.7995 29.7995 13 Flag:Salinity:Bottle n/a 14 Chlorophyll:Extracted mg/m^3 0.27 6.4 15 Flag:Chlorophyll:Extracted n/a 16 Oxygen:Dissolved mL/L 3.511 6.45 17 Flag:Oxygen:Dissolved n/a 18 Nitrate_plus_Nitrite umol/L 6.1 26.7 19 Flag:Nitrate_plus_Nitrite n/a 20 Silicate umol/L 17 42 21 Flag:Silicate n/a 22 Phosphate umol/L 0.7 2.14 23 Flag:Phosphate n/a 24 Ammonium umol/L 0.8E-01 1.19 25 Flag:Ammonium n/a $END $TABLE: CHANNEL DETAIL ! No Pad Start Width Format Type Decimal_Places !--- ---- ----- ----- ------ ---- -------------- 1 -99 ' ' 5 I I 0 2 -99 ' ' 7 F ' ' 1 3 -99 ' ' 9 F ' ' 4 4 -99 ' ' 7 F ' ' 2 5 -99 ' ' 8 F ' ' 3 6 -99 ' ' 7 F ' ' 2 7 -99 ' ' 6 F ' ' 1 8 -99 ' ' 7 F ' ' 1 9 -99 ' ' 9 F ' ' 4 10 -99 ' ' 3 I I 0 11 ' ' ' ' 5 I I 0 12 -99 ' ' 9 F R4 4 13 0 ' ' 3 NQ C ' ' 14 -99 ' ' 7 F R4 2 15 0 ' ' 3 NQ C ' ' 16 -99 ' ' 8 F ' ' 3 17 0 ' ' 3 NQ C ' ' 18 -99 ' ' 6 F R4 1 19 0 ' ' 3 NQ C ' ' 20 -99 ' ' 6 F R4 1 21 0 ' ' 3 NQ C ' ' 22 -99 ' ' 7 F R4 2 23 0 ' ' 3 NQ C ' ' 24 -99 ' ' 7 F R4 2 25 0 ' ' 3 NQ C ' ' $END $REMARKS Flag channels initialized with zeros. Non-zero values have the following significance: -------------------------------------------------------------------------------------- 1 = Sample for this measurement was drawn from water bottle but not analyzed (not normally used). 2 = Acceptable measurement (not normally used). 3 = Questionable measurement (no problem observed in sampling or analysis, but value is not trusted, nonetheless; includes outlyers). 4 = Bad measurement (known problem with sampling or analysis, but not serious enough to completely discard the value). 5 = Not reported (lost sample; unredeemably bad measurement). 6 = Mean of replicate measurements. 7 = Manual chromatographic peak measurement. 8 = Irregular digital chromatographic peak integration. 9 = Sample not drawn for this measurement from this bottle (not normally used). -------------------------------------------------------------------------------------- $END *ADMINISTRATION MISSION : 2007-16 AGENCY : IOS, Ocean Sciences Division, Sidney, B.C. COUNTRY : Canada PROJECT : La Perouse SCIENTIST : Yelland D. PLATFORM : John P. Tully *LOCATION GEOGRAPHIC AREA : WCVI STATION : CS06 EVENT NUMBER : 115 LATITUDE : 51 0.45000 N ! (deg min) LONGITUDE : 128 50.34000 W ! (deg min) WATER DEPTH : 65 ALTIMETER (M) : 5.81 ! custom item $REMARKS Altimeter value is distance from bottom and is calculated as the median of the deepest 2 metres of data. $END *INSTRUMENT TYPE : Sea-Bird CTD MODEL : SBE-911plus SERIAL NUMBER : 0443 $TABLE: SENSORS ! Name Abs Depth Serial No ! ------------------------- -------------- ---------- temperature:primary ' ' 2106 conductivity:primary ' ' 2424 pressure ' ' 63507 temperature:secondary ' ' 4752 conductivity:secondary ' ' 1763 Fluorometer ' ' Seapoint transmissometer:primary ' ' 953DR Oxygen:SBE ' ' 1119 altimeter: ' ' ' ' irradiance:primary ' ' 4656 $END $REMARKS SOFTWARE VERSION SEASAVE V 7.12 $END *HISTORY $TABLE: PROGRAMS ! Name Vers Date Time Recs In Recs Out ! ------------ ------ ---------- -------- --------- --------- SBE_IOS 3.1 2008/03/19 10:54:44 726 726 ADDSAMP 3.4 2008/03/21 14:31:14 726 726 BINAVE 4.1.1 2008/03/21 14:31:56 726 6 MERGE 3.3 2008/04/17 16:51:01 6 6 CLEAN 5.0.2 2008/04/17 16:51:07 ? ? CALIB 11.7 2008/04/17 16:52:02 6 6 SORT 3.5 2008/04/17 16:52:08 6 6 REMOVECH 8.0 2008/04/17 16:52:21 6 6 CHGUNITS 3.0 2008/04/17 16:52:56 6 6 REORDER 1.2.1 2008/04/17 16:53:03 ? ? HDREDIT2 2.5.1 2008/04/17 16:53:25 ? ? HDREDIT2 2.5.1 2010/08/13 13:57:53 ? ? CHANGE_FLAGS 1.0 2013/07/16 16:32:59 6 6 HDREDIT2 2.6 2013/12/16 13:07:49 ? ? CHANGE_FLAGS 2.0 2014/11/20 09:55:45 6 6 $END $REMARKS -The following ADDSAMP parameters were used: Sample Number Lookup File: Q:\Cruise_Data_Processing\2007-16\Processing\hydro\addsamp.csv Bottle Channel Name: Bottle_Number -The following BINAVE parameters were used: Bin channel = Bottle_Number Averaging interval = 1.00 Minimum bin value = 0.000 Average value was used Interpolated values were NOT used for empty bins Channel 'NUMBER_OF_BIN_RECORDS' was added to file. -The following MERGE parameters were used: 2008/04/17 16:50:57 2008/04/17 16:50:57 2008/04/17 16:50: Merge Channel: Sample_Number Merge Scheme Used: Add Secondary to Primary Overlap Scheme Used: Keep Primary Primary Channels to Include: ALL Secondary Channels to Include: Salinity:Bottle, Flag:Salinity:Bottle, Chlorophyll:Extracted, Flag:Chlorophyll:Extracted, Oxygen:Dissolved, Flag:Oxygen:Dissolved, Nitrate_plus_Nitrite, Flag:Nitrate_plus_Nitrite, Silicate, Flag:Silicate, Phosphate, Flag:Phosphate, Ammonium, Flag:Ammonium Primary file : Q:\Cruise_Data_Processing\2007-16\Processing\hydro\2007-16-0115.samavg Secondary file: Q:\Cruise_Data_Processing\2007-16\Processing\hydro\2007-16-0115.mrgcln1 -CLEAN functions: 2008/04/17 16:51:04 20 Remove Sea-Bird comments from the header. Remove remark heading: "Comments from secondary" -CALIB parameters: 2008/04/17 16:52:02 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = Q:\Cruise_Data_Processing\2007-16\Processing\doc\2007-16-recal1.ccf Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 11 Oxygen:Dissolved:SBE mL/L 10 0.9500000E-02 0.1078700E+01 -SORT parameters: 2008/04/17 16:52:08 Sorted in ascending order of channel Press* -REMOVECH 2008/04/17 16:52:21 10 channels removed. -CHANGE units: 'Oxygen:Dissolved:SBE' changed from mL/L to umol/kg -HEADER EDITS: 2008/04/17 16:53:25 Applied edit header: Q:\Cruise_Data_Processing\2007-16\Processing\doc\2007-16-bot-hdr2.txt Channel 2: Pressure [decibar] Units: dbars ==> decibar Format: F11.2 ==> F7.1 Channel 5: Fluorescence:URU:Seapoint [mg/m^3] Name: Fluorescence:Seapoint ==> Fluorescence:URU:Seapoint Channel 6: Oxygen:Dissolved:SBE [mL/L] Format: F8.3 ==> F7.2 Channel 8: PAR [uE/m^2/sec] Format: F11.3 ==> F7.1 Channel 12: Salinity:Bottle [PSS-78] Units: ==> PSS-78 Channel 25: Flag:Ammonium [] Name: flag:Ammonium ==> Flag:Ammonium -HEADER EDITS: 2010/08/13 13:57:53 Applied edit header: C:\My Documents\PROCESSING NOTES\sample headers\fixhdr.txt Channel 4: Transmissivity [%/metre] Format: F6.1 ==> F7.2 -HEADER EDITS: 2013/12/16 13:07:49 Channel 13: Flag:Salinity:Bottle [n/a] Units: ==> n/a Channel 15: Flag:Chlorophyll:Extracted [n/a] Units: ==> n/a Channel 17: Flag:Oxygen:Dissolved [n/a] Units: ==> n/a Channel 19: Flag:Nitrate_plus_Nitrite [n/a] Units: ==> n/a Channel 21: Flag:Silicate [n/a] Units: ==> n/a Channel 23: Flag:Phosphate [n/a] Units: ==> n/a Channel 24: Ammonium [umol/L] Units: ==> umol/L Channel 25: Flag:Ammonium [n/a] Units: ==> n/a $END *COMMENTS NOTE: All sample numbers for this cast were repeats of ones that had been used for another cast, so they were renamed with a leading "9", so sample #425-430 became #9424-9430. The sample # assigned at sea, #430, had already been used. The analyst changed it to 4300 but for consistency with other samples that have repeats a leading "9" was used, so #9430. Dissolved Oxygen Sample #425: dirty colorimeter probe caused a questionable endpoint. Sample_Number 9425: Analyzed at IOS on Technicon Analyzer 070913 Sample_Number 9426: Analyzed at IOS on Technicon Analyzer 070913 Sample_Number 9427: Analyzed at IOS on Technicon Analyzer 070913 Sample_Number 9428: Analyzed at IOS on Technicon Analyzer 070913 Sample_Number 9429: Analyzed at IOS on Technicon Analyzer 070913 Sample_Number 9430: Analyzed at IOS on Technicon Analyzer 070913 Analysis methods: ----------------- Salinity samples are collected in glass bottles and analyzed at IOS on Guildline model 8400B Autosal Salinometers which are standardized with IAPSO standard seawater. Oxygen samples are analyzed at sea on an automated Winkler titration system following the procedures of Carpenter (1965). A Brinkmann model 665 Dosimat and model PC910 Colorimeter is controlled by Visual-Basic program to titrate the oxygen samples. Nutrient samples for this cast were stored frozen and analyzed at IOS using the Technicon II Autoanalyzer. Chlorophyll samples are collected in calibrated polycarbonate bottles (~330ml), then filtered onto 25mm MFS GF/75 filters at <70mmHg vacuum. The filters are placed in glass scintillation vials and immediately frozen at -20ºC until analysis. The chlorophyll is extracted in 10 ml of 90% acetone for 24h at -20ºC, then brought to room temperature and the extract is decanted and measured using a Turner Designs Model 10 fluorometer, which has been calibrated with solutions of commercially prepared chlorophyll. Chlorophyll samples were analyzed on board ship. Ammonium analyses at IOS follows the methods described in: Holmes, R.M., Aminot, A., Kerouel, R., Hooker, B.A., and Peterson, B.J. 1999 A simple and precise method for measuring ammonium in marine and freshwater ecosystems. Can. J. Fish. Aquat. Sci. 56: 1801-1808 References: 1. Carpenter, J.H. 1965. The Chesapeake Bay Institute Technique for the Winkler Dissolved Oxygen Method. Limmnol. & Oceanogr., 10: 141-143. 2. J. Barwell-Clarke and F. Whitney. 1996. Institute of Ocean Sciences Nutrient Methods and Analysis. Canadian Technical Report of Hydrography and Ocean Sciences, No. 182, 43 pp. *CALIBRATION $TABLE: CORRECTED CHANNELS ! Name Units Fmla Pad Coefficients ! ---------------------- ------ ---- ------ ------------ Oxygen:Dissolved:SBE mL/L 10 -99 () (0.95E-02 1.0787) $END !-1-- --2--- ---3---- --4--- ---5--- --6--- --7-- --8--- ---9---- 10 -11- ---12--- 13 --14-- 15 ---16-- 17 --18- 19 --20- 21 --22-- 23 --24-- 25 !Samp Pressu Temperat Transm Fluores Oxygen Oxyge PAR Salinity Bo Numb Salinity Fl Chloro Fl Oxygen: Fl Nitra Fl Silic Fl Phosph Fl Ammoni Fl !le_ re ure: issivi cence: : n: :T1:C1 tt er_o :Bottle ag phyll: ag Dissolv ag te_ ag ate ag ate ag um ag !Numb Secondar ty URU: Dissol Disso ~u ~bin ~o Extrac ~a ed ~o plus_ ~t ~i ~p ~o !er y Seapoin ved: lved: mb _rec tt ted ct lv Nitri ri ca ha ni ! t SBE SBE er ords le ed ed te te te te um !---- ------ -------- ------ ------- ------ ----- ------ -------- -- ---- -------- -- ------ -- ------- -- ----- -- ----- -- ------ -- ------ -- *END OF HEADER 9430 5.8 13.1667 26.70 3.680 6.35 277.2 89.1 29.5519 6 121 29.7995 0 6.40 0 6.450 0 6.1 0 17.0 0 0.70 0 0.08 6 9429 11.5 11.0938 49.80 0.830 5.33 232.6 23.9 31.2871 5 121 -99.0000 0 1.37 0 5.516 0 13.6 0 25.3 0 1.32 0 1.19 6 9428 20.6 10.1235 54.90 0.277 4.75 207.1 9.3 31.7180 4 121 -99.0000 0 0.27 0 4.871 0 16.6 0 28.9 0 1.50 0 1.12 6 9427 33.0 9.3774 55.30 0.207 4.40 191.5 1.9 32.1216 3 121 -99.0000 0 -99.00 0 4.376 0 19.8 0 33.4 0 1.71 0 -99.00 0 9426 52.2 7.8582 54.80 0.136 3.92 170.7 0.3 32.5939 2 121 -99.0000 0 -99.00 0 3.977 0 24.2 0 38.2 0 1.96 0 -99.00 0 9425 59.3 7.5100 54.50 0.122 3.65 158.9 0.2 32.7075 1 121 -99.0000 0 -99.00 0 3.511 3 26.7 0 42.0 0 2.14 0 -99.00 0