*2014/11/20 09:55:22.96 *IOS HEADER VERSION 1.10 2011/10/26 2011/10/26 *FILE START TIME : UTC 2007/02/12 02:26:41.000 TIME INCREMENT : 0 0 0 0.416667E-01 0 ! (day hr min sec ms) NUMBER OF RECORDS : 24 DATA DESCRIPTION : Bottle:Rosette:Up:Stop + CTD:Up FILE TYPE : ASCII CRC : 1B6CC477 NUMBER OF CHANNELS : 24 $TABLE: CHANNELS ! No Name Units Minimum Maximum !--- --------------------------------- --------------- -------------- -------------- 1 Sample_Number n/a 160 183 2 Bottle_Number n/a 1 24 3 Pressure decibar 6 3684.4 4 Temperature:Secondary 'deg C (ITS90)' 1.5667 7.0891 5 Transmissivity %/metre 48.2 56.5 6 Fluorescence:URU:Seapoint mg/m^3 0.28E-01 1.093 7 Oxygen:Dissolved:SBE mL/L 0.29 6.98 8 Oxygen:Dissolved:SBE umol/kg 12.6 303.9 9 Salinity:T1:C1 PSS-78 32.3984 34.6708 10 Number_of_bin_records n/a 121 121 11 Salinity:Bottle PSS-78 32.3998 34.6703 12 Flag:Salinity:Bottle n/a 13 Oxygen:Dissolved mL/L 0.291 6.964 14 Flag:Oxygen:Dissolved n/a 15 Nitrate_plus_Nitrite umol/L 10.9 45.9 16 Flag:Nitrate_plus_Nitrite n/a 17 Silicate umol/L 12.4 179.2 18 Flag:Silicate n/a 19 Phosphate umol/L 1.15 3.3 20 Flag:Phosphate n/a 21 Carbon:Dissolved:Inorganic umol/kg 2029.02 2399 22 Flag:Carbon:Dissolved:Inorganic n/a 23 Alkalinity:Total umol/kg 2166.7 2461.8 24 Flag:Alkalinity:Total n/a $END $TABLE: CHANNEL DETAIL ! No Pad Start Width Format Type Decimal_Places !--- ---- ----- ----- ------ ---- -------------- 1 -99 ' ' 5 I I 0 2 -99 ' ' 3 I I 0 3 -99 ' ' 7 F ' ' 1 4 -99 ' ' 9 F ' ' 4 5 -99 ' ' 6 F ' ' 1 6 -99 ' ' 8 F ' ' 3 7 -99 ' ' 7 F ' ' 2 8 -99 ' ' 6 F ' ' 1 9 -99 ' ' 9 F ' ' 4 10 ' ' ' ' 5 I I 0 11 -99 ' ' 9 F R4 4 12 0 ' ' 2 NQ C ' ' 13 -99 ' ' 8 F ' ' 3 14 0 ' ' 2 NQ C ' ' 15 -99 ' ' 6 F R4 1 16 0 ' ' 2 NQ C ' ' 17 -99 ' ' 6 F R4 1 18 0 ' ' 2 NQ C ' ' 19 -99 ' ' 7 F R4 2 20 0 ' ' 2 NQ C ' ' 21 -99 ' ' ' ' F8.2 R4 ' ' 22 0 ' ' 3 NQ C ' ' 23 -99 ' ' ' ' F7.1 R4 ' ' 24 0 ' ' 3 NQ C ' ' $END $REMARKS Flag channels initialized with zeros. Non-zero values have the following significance: -------------------------------------------------------------------------------------- 1 = Sample for this measurement was drawn from water bottle but not analyzed (not normally used). 2 = Acceptable measurement (not normally used). 3 = Questionable measurement (no problem observed in sampling or analysis, but value is not trusted, nonetheless; includes outlyers). 4 = Bad measurement (known problem with sampling or analysis, but not serious enough to completely discard the value). 5 = Not reported (lost sample; unredeemably bad measurement). 6 = Mean of replicate measurements. 7 = Manual chromatographic peak measurement. 8 = Irregular digital chromatographic peak integration. 9 = Sample not drawn for this measurement from this bottle (not normally used). -------------------------------------------------------------------------------------- $END *ADMINISTRATION MISSION : 2007-01 AGENCY : IOS, Ocean Sciences Division, Sidney, B.C. COUNTRY : Canada PROJECT : Line P SCIENTIST : Robert M. PLATFORM : John P. Tully *LOCATION GEOGRAPHIC AREA : N.E. Pacific STATION : P16 EVENT NUMBER : 41 LATITUDE : 49 16.98000 N ! (deg min) LONGITUDE : 134 39.98000 W ! (deg min) WATER DEPTH : 3621 ALTIMETER (M) : 10.38 ! custom item $REMARKS Altimeter value is distance from bottom and is calculated as the median of the deepest 2 metres of data. $END *INSTRUMENT TYPE : Sea-Bird CTD MODEL : SBE-911plus SERIAL NUMBER : 0585 $TABLE: SENSORS ! Name Abs Depth Serial No ! ------------------------- -------------- ---------- temperature:primary ' ' 2095 conductivity:primary ' ' 2424 pressure ' ' 63507 temperature:secondary ' ' 2668 conductivity:secondary ' ' 3038 Fluorometer ' ' Seapoint transmissometer:primary ' ' 953 Oxygen:SBE ' ' 1117 altimeter: ' ' ' ' irradiance:primary ' ' 4656 $END $REMARKS SOFTWARE VERSION SEASAVE WIN32 V 5.37C $END *HISTORY $TABLE: PROGRAMS ! Name Vers Date Time Recs In Recs Out ! ------------------------ ------ ---------- -------- --------- --------- SBE_IOS 3.0 2007/03/09 18:27:07 2904 2904 CLEAN 5.0 2007/03/11 13:13:28 ? ? ADDSAMP 3.4 2007/03/13 09:52:28 2904 2904 BINAVE 4.1.1 2007/03/13 09:53:41 2904 24 MERGE 3.3 2007/03/13 14:54:53 24 24 CLEAN 5.0 2007/03/19 12:47:54 ? ? CALIB 11.7 2007/03/23 14:31:48 24 24 SORT 3.5 2007/03/26 16:14:55 24 24 REMOVECH 7.0 2007/03/26 16:18:10 24 24 CHGUNITS 3.0 2007/03/26 16:19:01 24 24 REORDER 1.2.1 2007/03/26 16:19:39 ? ? HDREDIT2 2.5.1 2007/03/26 16:24:57 ? ? SORT 3.5 2008/12/03 10:05:43 24 24 MERGE 3.3 2008/12/03 10:06:15 24 24 MERGE 3.3 2008/12/03 10:07:51 24 24 MERGE 3.3 2009/01/12 10:33:38 24 24 HDREDIT2 2.5.1 2009/01/12 11:12:33 ? ? SORT 3.5 2010/04/18 15:16:11 24 24 MERGE 3.3 2010/04/18 15:16:29 24 24 HDREDIT2 2.5.1 2010/04/18 15:22:23 ? ? SORT 3.5 2010/04/18 15:23:33 24 24 CHANGE_FLAGS 1.0 2013/07/16 11:48:31 24 24 SORT 3.6 2013/10/08 11:19:50 24 24 CHANGE_CTD_CHANNEL_NAMES 1.0 2013/12/16 15:32:53 24 24 CHANGE_FLAGS 2.0 2014/11/20 09:55:22 24 24 $END $REMARKS -CLEAN functions: 2007/03/11 13:13:05 20 Set event to last 4 characters of file name -The following ADDSAMP parameters were used: Sample Number Lookup File: Q:\Cruise_Data\2007-01\ctd\hydro\addsamp.csv Bottle Channel Name: Bottle_Number -The following BINAVE parameters were used: Bin channel = Bottle_Number Averaging interval = 1.00 Minimum bin value = 0.000 Average value was used Interpolated values were NOT used for empty bins Channel 'NUMBER_OF_BIN_RECORDS' was added to file. -The following MERGE parameters were used: 2007/03/13 14:54:51 2007/03/13 14:54:51 2007/03/13 14:54: Merge Channel: Bottle_Number Merge Scheme Used: Add Secondary to Primary Overlap Scheme Used: Keep Primary Primary Channels to Include: ALL Secondary Channels to Include: Salinity:Bottle, Flag:Salinity:Bottle, Chlorophyll:Extracted, Flag:Chlorophyll:Extracted, Oxygen:Dissolved, Flag:Oxygen:Dissolved, Nitrate_plus_Nitrite, Flag:Nitrate_plus_Nitrite, Silicate, Flag:Silicate, Phosphate, Flag:Phosphate Primary file : Q:\Cruise_Data\2007-01\CTD\hydro\2007-01-0041.samavg Secondary file: Q:\Cruise_Data\2007-01\CTD\hydro\2007-01-0041.mrgcln1 -CLEAN functions: 2007/03/19 12:47:53 20 Remove Sea-Bird comments from the header. Remove remark heading: "Comments from secondary" -CALIB parameters: 2007/03/23 14:31:48 Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = Q:\Cruise_Data\2007-01\CTD\hydro\2007-01-0443.ccf Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 11 Oxygen:Dissolved:SBE mL/L 10 -0.1420000E-01 0.9893000E+00 -SORT parameters: 2007/03/26 16:14:55 Sorted in ascending order of channel Pressure -REMOVECH 2007/03/26 16:18:10 The following CHANNEL(S) were removed: Scan_Number Temperature:Primary [deg C (ITS90)] Conductivity:Primary [S/m] Conductivity:Secondary [S/m] Oxygen:Voltage:SBE [volts] PAR [uE/m^2/sec] Altimeter [metres] Descent_Rate [m/s] Status:Pump Salinity:T0:C0 [PSS-78] Flag -CHANGE units: 'Oxygen:Dissolved:SBE [mL/L]' changed from mL/L to umol/kg -HEADER EDITS: 2007/03/26 16:24:57 Applied edit header: Q:\Cruise_Data\2007-01\CTD\doc\2007-01-bot-hdr.txt Channel 2: Pressure [decibar] Units: dbars ==> decibar Format: F10.3 ==> F7.1 Channel 5: Fluorescence:URU:Seapoint [mg/m^3] Name: Fluorescence:Seapoint ==> Fluorescence:URU:Seapoint Channel 6: Oxygen:Dissolved:SBE [mL/L] Format: F8.3 ==> F7.2 -SORT parameters: 2008/12/03 10:05:43 Sorted in ascending order of channel Sample_Number -MERGE *** Secondary file not found *** Primary file : Q:\Cruise_Data_Processing\Archive-updates\2007-01\2007-01-0041.che2 Secondary file: Q:\Cruise_Data_Processing\Archive-updates\2007-01\2007-01-0041.chl -MERGE *** Secondary file not found *** Primary file : Q:\Cruise_Data_Processing\Archive-updates\2007-01\2007-01-0041.che3 Secondary file: Q:\Cruise_Data_Processing\Archive-updates\2007-01\2007-01-0041.nut -MERGE *** Secondary file not found *** Primary file : Q:\Cruise_Data_Processing\Archive-updates\2007-01\2007-01-0041.che4 Secondary file: Q:\Cruise_Data_Processing\Archive-updates\2007-01\2007-01-0041.dms -HEADER EDITS: 2009/01/12 11:12:33 - none. -SORT parameters: 2010/04/18 15:16:11 Sorted in ascending order of channel Sample_Number -The following MERGE parameters were used: 2010/04/18 15:16:29 2010/04/18 15:16:29 2010/04/18 15:16: Merge Channel: Sample_Number Merge Scheme Used: Add Secondary to Primary Overlap Scheme Used: Average Primary Channels to Include: ALL Secondary Channels to Include: Carbon:Dissolved:Inorganic, Flag:Carbon:Dissolved:Inorganic, Alkalinity:Total, Flag:Alkalinity:Total Primary file : H:\Cruise_Data_Processing\Lisa Miller's Carbon Data\2007-01\2007-01-0041.chesrt Secondary file: H:\Cruise_Data_Processing\Lisa Miller's Carbon Data\2007-01\2007-01-0041.iossrt Comments from secondary file: H:\Cruise_Data_Processing\Lisa Miller's Carbon Data\2007-01\2007-01-0041.iossrt --------------------------------------------------------------------------- -SORT parameters: 2010/04/18 15:15:47 Sorted in ascending order of channel Sample_Number -HEADER EDITS: 2010/04/18 15:22:23 Applied edit header: H:\Cruise_Data_Processing\Lisa Miller's Carbon Data\DIC_ALK.txt -SORT parameters: 2010/04/18 15:23:33 Sorted in ascending order of channel Pressure -SORT parameters: 2013/10/08 11:19:50 Sorted in ascending order of channel Pressure* $END *COMMENTS Sample_Number 166: Salinity: Outlier in comparison to CTD salinity Sample_Number 164: All: looks like double trip of bottle 1 Sample_Number 170: All: looks like double trip of bottle 7 Sample_Number 176: All: looks like double trip of bottle 13 Sample_Number 182: All: looks like double trip of bottle 19 Samples #164, 170, 176, 182 all look as if the bottle closed prematurely. They are out of line with CTD data and look wrong in profiles. All bottle data have been replaced with pad values and flagged 5. Analysis methods: ----------------- Salinity samples are collected in glass bottles and analyzed on Guildline model 8400B Autosal Salinometers which are standardized with IAPSO standard seawater. Oxygen samples are analyzed on an automated Winkler titration system following the procedures of Carpenter (1965). A Brinkmann model 665 Dosimat and model PC910 Colorimeter is controlled by Visual-Basic program to titrate the oxygen samples. Nutrient samples were analyzed fresh at sea by Janet Barwell-Clarke using a Technicon AAII autoanalyzer following methods described in Barwell-Clarke and Whitney (1996). Chlorophyll samples are collected in calibrated polycarbonate bottles (~330ml), then filtered onto 25mm MFS GF/75 filters at <70mmHg vacuum. The filters are placed in glass scintillation vials and immediately frozen at -20ºC until analysis. The chlorophyll is extracted in 10 ml of 90% acetone for 24h at -20ºC, then brought to room temperature and the extract is decanted and measured using a Turner Designs Model 10 fluorometer, which has been calibrated with solutions of commercially prepared chlorophyll. Chlorophyll samples were analyzed on board ship by Marie Robert. Dissolved inorganic carbon (DIC) was determined using coulometric analysis. Total alkalinity (Alk) was determined by potentiometric titration. Complete documentation on DIC and ALK sampling, analysis and precision estimates can be found in the Carbon Excel file from the cruise located in the cruise "DOC" directory. . References: 1. Carpenter, J.H. 1965. The Chesapeake Bay Institute Technique for the Winkler Dissolved Oxygen Method. Limmnol. & Oceanogr., 10: 141-143. 2. J. Barwell-Clarke and F. Whitney. 1996. Institute of Ocean Sciences Nutrient Methods and Analysis. Canadian Technical Report of Hydrography and Ocean Sciences, No. 182, 43 pp. Comments from secondary file: H:\Cruise_Data_Processing\Lisa Miller's Carbon Data\2007-01\2007-01-0041.iossrt --------------------------------------------------------------------------- Sample_Number 173: Alk: Suspect calibration Sample_Number 176: Niskin fired @ 151.4 dbar, likely closed @ 300 m Sample_Number 172: Alk: Suspect calibration Sample_Number 171: Alk: Suspect calibration Sample_Number 170: Niskin fired @ 600.8 dbar, likely closed @ 1500 m Sample_Number 166: Alk: Suspect calibration Sample_Number 165: TIC & Alk: Bad calibrations; TIC low compared to historical data Sample_Number 164: Misfire; TIC & Alk: Bad calibrations Sample_Number 163: TIC & Alk: Bad calibrations; TIC: Low compared to historical data; Alk: Large differences between replicates. Sample_Number 162: TIC & Alk: Bad calibrations Sample_Number 161: Misfire; TIC & Alk: Bad calibrations Sample_Number 160: TIC & Alk: Bad calibrations; TIC low compared to historical data *CALIBRATION $TABLE: CORRECTED CHANNELS ! Name Units Fmla Pad Coefficients ! ---------------------- ------ ---- ------ ------------ Oxygen:Dissolved:SBE mL/L 10 -99 () (-0.142E-01 0.9893) $END !-1-- 2- --3--- ---4---- --5-- ---6--- --7--- --8-- ---9---- -10- ---11--- - ---13-- - --15- - --17- - --19-- - ---21-- 22 --23-- 24 !Samp Bo Pressu Temperat Trans Fluores Oxygen Oxyge Salinity Numb Salinity F Oxygen: F Nitra F Silic F Phosph F Carbon: Fl Alkali Fl !le_ tt re ure: missi cence: : n: :T1:C1 er_o :Bottle l Dissolv l te_ l ate l ate l Dissolv ag nity: ag !Numb ~u Secondar vity URU: Dissol Disso ~bin ~ ed ~ plus_ ~ ~ ~ ed: ~g Total ~T !er mb y Seapoin ved: lved: _rec l e Nitri t t t Inorgan an ot ! er t SBE SBE ords e d te e e e ic ic al !---- -- ------ -------- ----- ------- ------ ----- -------- ---- -------- - ------- - ----- - ----- - ------ - ------- -- ------ -- *END OF HEADER 183 24 6.0 7.0891 48.2 1.082 6.98 303.9 32.3984 121 32.3998 0 6.964 0 10.9 0 12.5 0 1.15 0 2030.90 0 2192.1 0 182 23 10.2 7.0697 49.8 1.093 6.97 303.4 32.4096 121 -99.0000 5 -99.000 5 -99.0 5 -99.0 5 -99.00 5 -99.00 0 -99.0 0 181 22 25.0 7.0374 50.3 1.089 6.95 302.4 32.4238 121 32.4231 0 6.944 0 11.3 0 12.4 0 1.16 0 2070.73 0 2166.7 0 180 21 50.7 6.9834 52.1 0.689 6.91 301.1 32.4263 121 32.4264 0 6.724 0 11.7 0 12.9 0 1.19 0 2029.02 0 2175.0 0 179 20 75.7 6.9420 54.5 0.264 6.73 293.1 32.4737 121 32.4708 0 6.781 0 12.1 0 13.3 0 1.22 0 2049.37 0 2177.3 0 178 19 100.2 6.8604 55.1 0.099 5.71 248.5 32.8207 121 32.7985 0 5.817 0 17.1 0 20.8 0 1.49 0 2079.05 0 2197.1 0 177 18 125.4 6.1900 55.4 0.046 4.51 196.0 33.4327 121 33.4542 0 4.512 0 25.3 0 34.9 0 1.94 0 2159.64 0 2234.8 0 176 17 151.4 5.8460 55.5 0.038 4.26 185.4 33.6163 121 -99.0000 5 -99.000 5 -99.0 5 -99.0 5 -99.00 5 -99.00 5 -99.0 5 175 16 176.4 5.6692 55.6 0.036 3.86 167.7 33.7331 121 33.7336 0 3.882 0 28.9 0 44.7 0 2.13 0 2186.82 0 2248.3 0 174 15 200.6 5.5686 55.5 0.037 3.40 148.1 33.7947 121 33.7890 0 3.504 0 30.7 0 49.5 0 2.25 0 2206.02 0 2256.7 0 173 14 249.2 5.3455 55.5 0.036 2.57 111.5 33.8559 121 33.8545 0 2.611 0 34.6 0 59.5 0 2.51 0 2248.10 0 2274.9 3 172 13 301.8 5.0342 55.7 0.037 1.75 76.0 33.9176 121 33.9159 0 1.803 0 38.6 0 70.5 0 2.77 0 2272.68 0 2294.9 3 171 12 400.5 4.5935 56.0 0.037 1.09 47.2 34.0133 121 34.0125 0 1.069 0 42.1 6 85.9 6 3.02 6 2311.15 0 2301.5 3 170 11 600.8 3.9205 56.2 0.038 0.65 28.4 34.1317 121 -99.0000 5 -99.000 5 -99.0 5 -99.0 5 -99.00 5 -99.00 5 -99.0 5 169 10 800.9 3.4527 56.2 0.038 0.36 15.5 34.2739 121 34.2714 0 0.346 0 45.1 0 128.8 0 3.27 0 2365.87 0 2355.3 0 168 9 1001.3 3.0567 56.3 0.038 0.29 12.6 34.3613 121 34.3606 0 0.291 0 45.6 0 143.2 0 3.30 0 2381.50 0 2371.3 0 167 8 1251.1 2.6854 56.3 0.037 0.35 15.3 34.4411 121 34.4397 0 0.323 0 45.9 0 155.6 0 3.29 0 2400.46 0 2393.3 0 166 7 1500.6 2.3831 56.3 0.036 0.56 24.5 34.5008 121 34.5266 4 0.519 0 45.4 0 164.8 0 3.25 0 2399.00 0 2398.0 3 165 6 2000.6 1.9326 56.4 0.033 1.36 59.2 34.5904 121 34.5886 0 1.311 0 43.2 0 174.5 0 3.09 0 2138.44 4 2425.9 4 164 5 2502.0 1.7303 56.5 0.030 1.97 85.7 34.6309 121 -99.0000 5 -99.000 5 -99.0 5 -99.0 5 -99.00 5 -99.00 5 -99.0 5 163 4 3002.3 1.6010 56.4 0.028 2.51 109.2 34.6555 121 34.6560 0 2.448 0 39.8 0 175.7 0 2.84 0 2234.71 4 2434.6 46 162 3 3002.5 1.6007 56.3 0.028 2.51 109.2 34.6554 121 34.6544 0 2.437 0 39.8 0 175.8 0 2.84 0 2229.19 4 2430.4 4 161 2 3502.7 1.5667 56.2 0.028 2.81 121.9 34.6681 121 34.6668 0 -99.000 5 39.1 0 177.7 0 2.78 0 2319.83 4 2461.8 4 160 1 3684.4 1.5683 56.0 0.028 2.87 124.8 34.6708 121 34.6703 0 2.962 0 39.0 0 179.2 0 2.78 0 2257.91 4 2439.4 4