*2014/11/20 09:54:39.94 *IOS HEADER VERSION 1.10 2011/10/26 2011/10/26 *FILE START TIME : UTC 2005/03/04 02:30:25.000 TIME INCREMENT : 0 0 0 0.416667E-01 0 ! (day hr min sec ms) NUMBER OF RECORDS : 14 DATA DESCRIPTION : Bottle:Rosette:Up:Stop + CTD:Up FILE TYPE : ASCII NUMBER OF CHANNELS : 23 $TABLE: CHANNELS ! No Name Units Minimum Maximum !--- ---------------------------- --------------- -------------- -------------- 1 Sample_Number n/a 169 182 2 Pressure decibar 2.5 154.4 3 Temperature:Secondary 'deg C (ITS90)' 8.1949 8.5442 4 Transmissivity %/metre 25.4 43.7 5 Fluorescence:URU:Seapoint mg/m^3 0.297 1.582 6 Oxygen:Dissolved:SBE mL/L 4.12 5.57 7 PAR uE/m^2/sec 0.5 1.2 8 PAR:Reference uE/m^2/sec 29.1 29.1 9 Bottle_Number n/a 1 14 10 Salinity:T1:C1 PSS-78 31.4634 32.9834 11 Number_of_bin_records n/a 109 121 12 Chlorophyll:Extracted mg/m^3 0.92 1.24 13 Flag:Chlorophyll:Extracted n/a 14 Oxygen:Dissolved mL/L 4.258 5.664 15 Flag:Oxygen:Dissolved n/a 16 Salinity:Bottle PSS-78 31.4812 32.99 17 Flag:Salinity:Bottle n/a 18 Nitrate_plus_Nitrite umol/L 22.4 26.2 19 Flag:Nitrate_plus_Nitrite n/a 20 Silicate umol/L 29.4 43 21 Flag:Silicate n/a 22 Phosphate umol/L 1.76 2.08 23 Flag:Phosphate n/a $END $TABLE: CHANNEL DETAIL ! No Pad Start Width Format Type Decimal_Places !--- ------ ----- ----- ------ ---- -------------- 1 -99 ' ' 5 I I 0 2 -99 ' ' 7 F ' ' 1 3 -99 ' ' 9 F ' ' 4 4 -99 ' ' 6 F ' ' 1 5 -99 ' ' 8 F ' ' 3 6 -99 ' ' 7 F ' ' 2 7 -99 ' ' 7 F ' ' 1 8 -99 ' ' 7 F ' ' 1 9 -99 ' ' 3 I I 0 10 -99 ' ' 9 F ' ' 4 11 ' ' ' ' 5 I I 0 12 -99 ' ' 7 F R4 2 13 0 ' ' 2 NQ C ' ' 14 -99.99 ' ' 8 F ' ' 3 15 0 ' ' 2 NQ C ' ' 16 -99 ' ' ' ' F9.4 R4 ' ' 17 0 ' ' 2 NQ C ' ' 18 -99 ' ' ' ' F6.1 R4 ' ' 19 0 ' ' 2 NQ C ' ' 20 -99 ' ' ' ' F6.1 R4 ' ' 21 0 ' ' 2 NQ C ' ' 22 -99 ' ' ' ' F7.2 R4 ' ' 23 0 ' ' 2 NQ C ' ' $END $REMARKS Flag channels initialized with zeros. Non-zero values have the following significance: -------------------------------------------------------------------------------------- 1 = Sample for this measurement was drawn from water bottle but not analyzed (not normally used). 2 = Acceptable measurement (not normally used). 3 = Questionable measurement (no problem observed in sampling or analysis, but value is not trusted, nonetheless; includes outlyers). 4 = Bad measurement (known problem with sampling or analysis, but not serious enough to completely discard the value). 5 = Not reported (lost sample; unredeemably bad measurement). 6 = Mean of replicate measurements. 7 = Manual chromatographic peak measurement. 8 = Irregular digital chromatographic peak integration. 9 = Sample not drawn for this measurement from this bottle (not normally used). -------------------------------------------------------------------------------------- $END *ADMINISTRATION MISSION : 2005-02 AGENCY : IOS, Ocean Science and Productivity, Sidney, B.C. COUNTRY : Canada PROJECT : Optical Properties Off Vancouver Island SCIENTIST : Pena A. PLATFORM : John P. Tully *LOCATION GEOGRAPHIC AREA : WCVI/Strait of Georgia STATION : JDF3 EVENT NUMBER : 30 LATITUDE : 48 19.68000 N ! (deg min) LONGITUDE : 123 59.99000 W ! (deg min) ALTIMETER (M) : 12.21 ! custom item $REMARKS Altimeter value is distance from bottom and is calculated as the median of the deepest 2 metres of data. $END *INSTRUMENT TYPE : Sea-Bird CTD MODEL : SBE-911plus SERIAL NUMBER : 0443 $TABLE: SENSORS ! Name Abs Depth Serial No ! ------------------------- -------------- ---------- temperature:primary ' ' 2449 conductivity:primary ' ' 2102 pressure ' ' 63507 temperature:secondary ' ' 2023 conductivity:secondary ' ' 1766 Fluorometer ' ' Seapoint transmissometer:primary ' ' 333DR Oxygen:SBE ' ' 0766 irradiance:primary ' ' 4656 altimeter: ' ' ' ' surface ' ' 'degrees = 0.0' $END $REMARKS SOFTWARE VERSION SEASAVE WIN32 V 5.32 Comments from secondary file: Q:\Cruise_Data\2005-02\ctd\hydro\2005-02-0030.add ------------------------------------------------- Dissolved oxygen concentration determined using an automated titration system consisting of a Brinkman dosimat (model 665) and a PC 900 Colorimeter. $END *HISTORY $TABLE: PROGRAMS ! Name Vers Date Time Recs In Recs Out ! ------------------------ ------ ---------- -------- --------- --------- SBE_IOS 2.9 2005/04/04 15:22:51 1681 1681 CLEAN 4.7.1 2005/04/04 15:25:00 1681 1681 ADDSAMP 3.4 2005/04/19 09:39:40 1681 1681 BINAVE 4.1 2005/04/19 09:39:59 1681 14 MERGE 3.3 2005/04/19 10:14:06 14 14 MERGE 3.3 2005/04/19 10:16:46 14 14 CALIB 11.4 2005/04/19 15:27:17 14 14 CLEAN 4.7.1 2005/04/20 14:54:37 ? ? SORT 3.5 2005/04/20 14:54:51 14 14 REMOVECH 7.0 2005/04/20 15:29:08 14 14 HDREDIT2 2.4 2005/04/20 16:09:56 ? ? SORT 3.5 2005/05/29 12:17:09 14 14 MERGE 3.3 2005/05/29 12:17:14 14 14 SORT 3.5 2005/05/29 14:58:19 14 14 SORT 3.5 2005/07/05 16:56:15 14 14 MERGE 3.3 2005/07/05 16:56:45 14 14 SORT 3.5 2005/07/05 17:00:34 14 14 CHANGE_FLAGS 1.0 2013/07/29 14:29:58 14 14 CHANGE_CTD_CHANNEL_NAMES 1.0 2013/12/16 15:31:56 14 14 CHANGE_FLAGS 2.0 2014/11/20 09:54:39 14 14 $END $REMARKS -CLEAN functions: 2005/04/04 15:24:37 20 Interpolation by Channel 1: Scan_Number [n/a] in Pressure Change Pad Value to -99 in Channel: Oxygen:Dissolved:SBE [mL/L] Set event to last 4 characters of file name -The following ADDSAMP parameters were used: Sample Number Lookup File: Q:\Cruise_Data\2005-02\ctd\hydro\addsamp.csv Bottle Channel Name: Bottle_Number -The following BINAVE parameters were used: Bin channel = Bottle_Number Averaging interval = 0.50 Minimum bin value = 0.000 Average value was used Interpolated values were NOT used for empty bins Channel 'NUMBER_OF_BIN_RECORDS' was added to file. -The following MERGE parameters were used: 2005/04/19 10:14:05 2005/04/19 10:14: Merge Channel: Sample_Number Merge Scheme Used: Add Secondary to Primary Overlap Scheme Used: Keep Primary Primary Channels to Include: ALL Secondary Channels to Include: Chlorophyll:Extracted, Flag:Chlorophyll:Extracted Primary file : Q:\Cruise_Data\2005-02\ctd\hydro\2005-02-0030.samavg Secondary file: Q:\Cruise_Data\2005-02\ctd\hydro\2005-02-0030.chl -The following MERGE parameters were used: 2005/04/19 10:16:46 2005/04/19 10:16: Merge Channel: Sample_Number Merge Scheme Used: Add Secondary to Primary Overlap Scheme Used: Keep Primary Primary Channels to Include: ALL Secondary Channels to Include: Oxygen:Dissolved, Flag:Oxygen:Dissolved Primary file : Q:\Cruise_Data\2005-02\ctd\hydro\2005-02-0030.mrg1 Secondary file: Q:\Cruise_Data\2005-02\ctd\hydro\2005-02-0030.add Comments from secondary file: Q:\Cruise_Data\2005-02\ctd\hydro\2005-02-0030.add ------------------------------------------------- C.H. Culbertson's paper on Dissolved Oxygen in the 'Woce Hydrographic Program Operations and Methods - July 1991' -The following CALIB parameters were used: Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = Q:\Cruise_Data\2005-02\ctd\doc\2005-02-recal1.ccf Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 11 Oxygen:Dissolved:SBE mL/L 10 0.1110000E+00 0.1463000E+01 -CLEAN functions: 2005/04/20 14:54:36 20 Remove Sea-Bird comments from the header. -SORT parameters: 2005/04/20 14:54:51 Sorted in ascending order of channel Pressure -REMOVECH 2005/04/20 15:29:08 The following CHANNEL(S) were removed: Scan_Number Temperature:Primary [deg C (ITS90)] Conductivity:Primary [S/m] Conductivity:Secondary [S/m] Oxygen:Voltage:SBE [volts] Altimeter [metres] Descent_Rate [m/s] Salinity:T0:C0 [PSS-78] Flag -HEADER EDITS: 2005/04/20 16:09:56 Applied edit header: Q:\Cruise_Data\2005-02\ctd\doc\2005-02-bot-hdr.txt Channel 2: Pressure [decibar] Units: dbars ==> decibar Format: F10.3 ==> F7.1 Channel 5: Fluorescence:URU:Seapoint [mg/m^3] Name: Fluorescence:Seapoint ==> Fluorescence:URU:Seapoint Channel 6: Oxygen:Dissolved:SBE [mL/L] Format: F8.3 ==> F7.2 Channel 7: PAR [uE/m^2/sec] Format: F11.3 ==> F7.1 Channel 8: PAR:Reference [uE/m^2/sec] Format: F11.3 ==> F7.1 Channel 12: Chlorophyll:Extracted [mg/m^3] Units: ==> mg/m^3 Channel 13: Flag:Chlorophyll:Extracted [n/a] Units: ==> n/a Channel 15: Flag:Oxygen:Dissolved [n/a] Units: newunits ==> n/a -SORT parameters: 2005/05/29 12:17:09 Sorted in ascending order of channel Sample_Number -The following MERGE parameters were used: 2005/05/29 12:17:13 2005/05/29 12:17:13 2005/05/29 12:17: Merge Channel: Sample_Number Merge Scheme Used: Add Secondary to Primary Overlap Scheme Used: Keep Primary Primary Channels to Include: ALL Secondary Channels to Include: Salinity:Bottle, Flag:Salinity:Bottle Primary file : Q:\Cruise_Data\2005-02\ctd\hydro\2005-02-0030.pche2 Secondary file: Q:\Cruise_Data\2005-02\ctd\hydro\2005-02-0030.sal -SORT parameters: 2005/05/29 14:58:19 Sorted in ascending order of channel Pressure -SORT parameters: 2005/07/05 16:56:15 Sorted in descending order of channel Sample_Number -The following MERGE parameters were used: 2005/07/05 16:56:44 2005/07/05 16:56:44 2005/07/05 16:56: Merge Channel: Sample_Number Merge Scheme Used: Interweave Records from Both Files Overlap Scheme Used: Keep Primary Primary Channels to Include: ALL Secondary Channels to Include: Nitrate_plus_Nitrite, Flag:Nitrate_plus_Nitrite, Silicate, Flag:Silicate, Phosphate, Flag:Phosphate Primary file : H:\Data Processing\2005\2005-02\NUts\2005-02-0030.srt_che Secondary file: H:\Data Processing\2005\2005-02\NUts\2005-02-0030.ios -SORT parameters: 2005/07/05 17:00:34 Sorted in ascending order of channel Pressure $END *COMMENTS Analysis methods: ----------------- Salinity samples are collected in glass bottles and analyzed on Guildline model 8410 Portasal Salinometers which are standardized with IAPSO standard seawater. Oxygen samples are analyzed on an automated Winkler titration system following the procedures of Carpenter (1965). A Brinkmann model 665 Dosimat and model PC910 Colorimeter is controlled by Visual-Basic program to titrate the oxygen samples. Nutrient samples are analyzed frozen using a Technicon AAII autoanalyzer following methods described in Barwell-Clarke and Whitney (1996). Chlorophyll samples are collected in duplicate in calibrated polycarbonate bottles (~330ml), then filtered onto 25mm MFS GF/75 filters at <70mmHg vacuum. The filters are placed in glass scintillation vials and immediately frozen at -20ºC until analysis. The chlorophyll is extracted in 10 ml of 90% acetone for 24h at -20ºC, then brought to room temperature and the extract is decanted and measured using a Turner Designs 10-AU-005-CE fluorometer, which has been calibrated with solutions of commercially prepared chlorophyll. References: 1. Carpenter, J.H. 1965. The Chesapeake Bay Institute Technique for the Winkler Dissolved Oxygen Method. Limmnol. & Oceanogr., 10: 141-143. 2. J. Barwell-Clarke and F. Whitney. 1996. Institute of Ocean Sciences Nutrient Methods and Analysis. Canadian Technical Report of Hydrography and Ocean Sciences, No. 182, 43 pp. *CALIBRATION $TABLE: CORRECTED CHANNELS ! Name Units Fmla Pad Coefficients ! ---------------------- ------ ---- ------ ------------ Oxygen:Dissolved:SBE mL/L 10 -99 () (0.111 1.463) $END !-1-- --2--- ---3---- --4-- ---5--- --6--- --7--- --8--- 9- ---10--- -11- --12-- - ---14-- - ---16--- - --18- - --20- - --22-- - !Samp Pressu Temperat Trans Fluores Oxygen PAR PAR: Bo Salinity Numb Chloro F Oxygen: F Salinity F Nitra F Silic F Phosph F !le_ re ure: missi cence: : Refere tt :T1:C1 er_o phyll: l Dissolv l :Bottle l te_ l ate l ate l !Numb Secondar vity URU: Dissol nce ~u ~bin Extrac ~ ed ~ ~ plus_ ~ ~ ~ !er y Seapoin ved: mb _rec ted e e l Nitri t t t ! t SBE er ords d d e te e e e !---- ------ -------- ----- ------- ------ ------ ------ -- -------- ---- ------ - ------- - -------- - ----- - ----- - ------ - *END OF HEADER 182 2.5 8.4565 37.5 1.190 5.56 1.2 29.1 14 31.4634 121 1.15 0 5.566 0 -99.0000 0 25.9 0 43.0 0 2.04 0 181 5.1 8.4553 37.7 1.234 5.57 0.7 29.1 13 31.4688 121 -99.00 0 -99.990 0 -99.0000 0 -99.0 0 -99.0 0 -99.00 0 180 5.1 8.4561 37.9 1.179 5.57 0.8 29.1 12 31.4694 121 1.20 0 5.622 0 31.4812 0 25.1 0 41.7 0 1.97 0 179 9.9 8.4519 38.4 1.234 5.55 0.6 29.1 11 31.4774 121 1.04 0 5.570 0 -99.0000 0 22.8 0 38.3 0 2.03 0 178 15.2 8.4197 38.5 1.249 5.53 0.5 29.1 10 31.4910 121 1.18 0 5.488 0 -99.0000 0 25.7 0 42.8 0 2.08 0 177 19.7 8.2903 38.0 1.582 5.51 0.5 29.1 9 31.5362 120 -99.00 0 -99.990 0 -99.0000 0 -99.0 0 -99.0 0 -99.00 0 176 19.8 8.2873 38.0 1.561 5.50 0.5 29.1 8 31.5395 109 1.24 0 5.664 0 -99.0000 0 25.8 0 42.7 0 1.99 0 175 26.0 8.2153 39.3 1.526 5.13 0.5 29.1 7 31.6096 121 1.17 0 5.151 0 -99.0000 0 26.0 0 42.7 0 1.94 0 174 27.9 8.1949 40.2 1.339 5.05 0.5 29.1 6 31.6373 121 0.92 0 5.031 0 -99.0000 0 26.2 0 42.7 0 2.05 0 173 49.1 8.2262 42.9 0.609 4.80 0.5 29.1 5 31.9498 121 -99.00 0 4.777 0 -99.0000 0 22.4 0 35.9 0 1.88 0 172 72.6 8.3792 43.3 0.467 4.79 0.5 29.1 4 32.3651 121 -99.00 0 4.817 0 -99.0000 0 23.0 0 33.8 0 1.76 0 171 98.9 8.4080 43.7 0.418 4.62 0.5 29.1 3 32.5286 121 -99.00 0 4.731 0 -99.0000 0 22.5 0 32.6 0 1.85 0 170 122.9 8.5442 38.4 0.319 4.40 0.5 29.1 2 32.8688 121 -99.00 0 4.380 0 -99.0000 0 22.9 0 29.4 0 1.78 0 169 154.4 8.4670 25.4 0.297 4.12 0.5 29.1 1 32.9834 121 -99.00 0 4.258 0 32.9900 0 23.1 0 31.6 0 1.82 0