*2014/11/20 09:54:37.99 *IOS HEADER VERSION 1.10 2011/10/26 2011/10/26 *FILE START TIME : UTC 2005/02/21 13:56:38.000 TIME INCREMENT : 0 0 0 0.416667E-01 0 ! (day hr min sec ms) NUMBER OF RECORDS : 24 DATA DESCRIPTION : Bottle:Rosette:Up:Stop + CTD:Up FILE TYPE : ASCII NUMBER OF CHANNELS : 21 $TABLE: CHANNELS ! No Name Units Minimum Maximum !--- ---------------------------- --------------- -------------- -------------- 1 Sample_Number n/a 366 389 2 Pressure decibar 4.5 4296.1 3 Temperature:Secondary 'deg C (ITS90)' 1.5086 8.5387 4 Transmissivity %/metre 41.9 54 5 Fluorescence:URU:Seapoint mg/m^3 0.129 1.72 6 Oxygen:Dissolved:SBE mL/L 0.37 6.75 7 Salinity:T1:C1 PSS-78 32.5806 34.6846 8 Bottle_Number n/a 1 24 9 Number_of_bin_records n/a 121 121 10 Salinity:Bottle PSS-78 32.5818 34.6865 11 Flag:Salinity:Bottle n/a 12 Oxygen:Dissolved mL/L 0.314 6.746 13 Flag:Oxygen:Dissolved n/a 14 Nitrate_plus_Nitrite umol/L 9.4 45.7 15 Flag:Nitrate_plus_Nitrite n/a 16 Silicate umol/L 12.1 177.4 17 Flag:Silicate n/a 18 Phosphate umol/L 1.05 3.29 19 Flag:Phosphate n/a 20 Chlorophyll:Extracted mg/m^3 0.25E-01 0.599 21 Flag:Chlorophyll:Extracted n/a $END $TABLE: CHANNEL DETAIL ! No Pad Start Width Format Type Decimal_Places !--- ---- ----- ----- ------ ---- -------------- 1 -99 ' ' 5 I I 0 2 -99 ' ' 7 F ' ' 1 3 -99 ' ' 9 F ' ' 4 4 -99 ' ' 6 F ' ' 1 5 -99 ' ' 8 F ' ' 3 6 -99 ' ' 7 F ' ' 2 7 -99 ' ' 9 F ' ' 4 8 -99 ' ' 3 I I 0 9 ' ' ' ' 5 I I 0 10 -99 ' ' 9 F R4 4 11 0 ' ' 2 NQ C ' ' 12 -99 ' ' 8 F ' ' 3 13 0 ' ' 2 NQ C ' ' 14 -99 ' ' 6 F R4 1 15 0 ' ' 2 NQ C ' ' 16 -99 ' ' 6 F R4 1 17 0 ' ' 2 NQ C ' ' 18 -99 ' ' 7 F R4 2 19 0 ' ' 2 NQ C ' ' 20 -99 ' ' 8 F R4 3 21 0 ' ' 2 NQ C ' ' $END $REMARKS Flag channels initialized with zeros. Non-zero values have the following significance: -------------------------------------------------------------------------------------- 1 = Sample for this measurement was drawn from water bottle but not analyzed (not normally used). 2 = Acceptable measurement (not normally used). 3 = Questionable measurement (no problem observed in sampling or analysis, but value is not trusted, nonetheless; includes outlyers). 4 = Bad measurement (known problem with sampling or analysis, but not serious enough to completely discard the value). 5 = Not reported (lost sample; unredeemably bad measurement). 6 = Mean of replicate measurements. 7 = Manual chromatographic peak measurement. 8 = Irregular digital chromatographic peak integration. 9 = Sample not drawn for this measurement from this bottle (not normally used). -------------------------------------------------------------------------------------- $END *ADMINISTRATION MISSION : 2005-01 AGENCY : IOS, Ocean Science and Productivity, Sidney, B.C. COUNTRY : Canada PROJECT : Line P SCIENTIST : Robert M. PLATFORM : John P. Tully *LOCATION GEOGRAPHIC AREA : North East Pacific STATION : P1E 98 EVENT NUMBER : 73 LATITUDE : 46 59.94000 N ! (deg min) LONGITUDE : 139 3.70000 W ! (deg min) ALTIMETER (M) : 10.67 ! custom item $REMARKS Altimeter value is distance from bottom and is calculated as the median of the deepest 2 metres of data. $END *INSTRUMENT TYPE : Sea-Bird CTD MODEL : SBE-911plus SERIAL NUMBER : 0443 $TABLE: SENSORS ! Name Abs Depth Serial No ! ------------------------- -------------- ---------- temperature:primary ' ' 2668 conductivity:primary ' ' 2399 pressure ' ' 63507 temperature:secondary ' ' 2106 conductivity:secondary ' ' 1763 Fluorometer ' ' Seapoint transmissometer:primary ' ' 333DR Oxygen:SBE ' ' 0766 irradiance:primary ' ' 4656 altimeter: ' ' ' ' $END $REMARKS SOFTWARE VERSION SEASAVE WIN32 V 5.32 Comments from secondary file: Q:\Cruise_Data\2005-01\CTD files\hydro\2005-01-0073.add ------------------------------------------------------- Dissolved oxygen concentration determined using an automated titration system consisting of a Brinkman dosimat (model 665) and a PC 900 Colorimeter. $END *HISTORY $TABLE: PROGRAMS ! Name Vers Date Time Recs In Recs Out ! ------------------------ ------ ---------- -------- --------- --------- SBE_IOS 2.9 2005/03/31 16:11:54 2904 2904 CLEAN 4.7.1 2005/03/31 16:12:58 2904 2904 ADDSAMP 3.4 2005/04/01 12:01:27 2904 2904 BINAVE 4.1 2005/04/01 12:02:17 2904 24 MERGE 3.3 2005/05/26 09:06:47 24 24 MERGE 3.3 2005/05/26 09:06:59 24 24 MERGE 3.3 2005/05/26 09:11:19 24 24 CALIB 11.4 2005/05/27 14:10:57 24 24 MERGE 3.3 2005/06/06 16:48:09 24 24 CLEAN 4.8 2005/06/06 16:49:06 ? ? SORT 3.5 2005/06/06 16:49:27 24 24 REMOVECH 7.0 2005/06/06 16:49:59 24 24 HDREDIT2 2.5 2005/06/06 16:52:18 ? ? CLEAN 5.0 2006/06/06 14:35:53 24 24 HDREDIT2 2.5.1 2006/06/06 14:56:51 ? ? CHANGE_FLAGS 1.0 2013/07/16 11:47:56 24 24 CHANGE_CTD_CHANNEL_NAMES 1.0 2013/12/16 15:31:55 24 24 CHANGE_FLAGS 2.0 2014/11/20 09:54:37 24 24 $END $REMARKS -CLEAN functions: 2005/03/31 16:12:12 20 Interpolation by Channel 1: Scan_Number [n/a] in Pressure Change Pad Value to -99 in Channel: Oxygen:Dissolved:SBE [mL/L] Set event to last 4 characters of file name -The following ADDSAMP parameters were used: Sample Number Lookup File: Q:\Cruise_Data\2005-01\CTD files\hydro\addsamp.csv Bottle Channel Name: Bottle_Number -The following BINAVE parameters were used: Bin channel = Bottle_Number Averaging interval = 1.00 Minimum bin value = 0.000 Average value was used Interpolated values were NOT used for empty bins Channel 'NUMBER_OF_BIN_RECORDS' was added to file. -The following MERGE parameters were used: 2005/05/26 09:06:44 2005/05/26 09:06:44 2005/05/26 09:06: Merge Channel: Sample_Number Merge Scheme Used: Add Secondary to Primary Overlap Scheme Used: Keep Primary Primary Channels to Include: ALL Secondary Channels to Include: Salinity:Bottle, Flag:Salinity:Bottle Primary file : Q:\Cruise_Data\2005-01\CTD files\hydro\2005-01-0073.samavg Secondary file: Q:\Cruise_Data\2005-01\CTD files\hydro\2005-01-0073.sal -The following MERGE parameters were used: 2005/05/26 09:06:57 2005/05/26 09:06:57 2005/05/26 09:06: Merge Channel: Sample_Number Merge Scheme Used: Add Secondary to Primary Overlap Scheme Used: Keep Primary Primary Channels to Include: ALL Secondary Channels to Include: Oxygen:Dissolved, Flag:Oxygen:Dissolved Primary file : Q:\Cruise_Data\2005-01\CTD files\hydro\2005-01-0073.mrg1 Secondary file: Q:\Cruise_Data\2005-01\CTD files\hydro\2005-01-0073.add Comments from secondary file: Q:\Cruise_Data\2005-01\CTD files\hydro\2005-01-0073.add ------------------------------------------------------- C.H. Culbertson's paper on Dissolved Oxygen in the 'Woce Hydrographic Program Operations and Methods - July 1991' -The following MERGE parameters were used: 2005/05/26 09:11:18 2005/05/26 09:11:18 2005/05/26 09:11: Merge Channel: Sample_Number Merge Scheme Used: Add Secondary to Primary Overlap Scheme Used: Keep Primary Primary Channels to Include: ALL Secondary Channels to Include: Nitrate, Flag:Nitrate, Silicate, Flag:Silicate, Phosphate, Flag:Phosphate Primary file : Q:\Cruise_Data\2005-01\CTD files\hydro\2005-01-0073.mrg2 Secondary file: Q:\Cruise_Data\2005-01\CTD files\hydro\2005-01-0073.nut1 Comments from secondary file: Q:\Cruise_Data\2005-01\CTD files\hydro\2005-01-0073.nut1 -------------------------------------------------------- -SORT parameters: 2005/05/26 09:10:03 Sorted in ascending order of channel Sample_Number -The following CALIB parameters were used: Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = Q:\Cruise_Data\2005-01\CTD files\hydro\2005-01-recal.ccf Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 12 Oxygen:Dissolved:SBE mL/L 10 0.4490000E-01 0.1500700E+01 15 Salinity:T1:C1 PSS-78 10 0.4400000E-02 0.1000000E+01 -The following MERGE parameters were used: 2005/06/06 16:48:07 2005/06/06 16:48:07 2005/06/06 16:48: Merge Channel: Sample_Number Merge Scheme Used: Add Secondary to Primary Overlap Scheme Used: Keep Primary Primary Channels to Include: ALL Secondary Channels to Include: Chlorophyll:Extracted, Flag:Chlorophyll:Extracted Primary file : Q:\Cruise_Data\2005-01\CTD files\test\2005-01-0073.mrgcor1 Secondary file: Q:\Cruise_Data\2005-01\CTD files\test\2005-01-0073.chl1 Comments from secondary file: Q:\Cruise_Data\2005-01\CTD files\test\2005-01-0073.chl1 ------------------------------------------------------- -SORT parameters: 2005/06/06 16:46:54 Sorted in ascending order of channel Sample_Number -CLEAN functions: 2005/06/06 16:49:04 20 Remove Sea-Bird comments from the header. -SORT parameters: 2005/06/06 16:49:27 Sorted in ascending order of channel Pressure -REMOVECH 2005/06/06 16:49:59 The following CHANNEL(S) were removed: Scan_Number Temperature:Primary [deg C (ITS90)] Conductivity:Primary [S/m] Conductivity:Secondary [S/m] Altimeter [metres] Oxygen:Voltage:SBE [volts] PAR [uE/m^2/sec] Salinity:T0:C0 [PSS-78] Flag -HEADER EDITS: 2005/06/06 16:52:18 Applied edit header: Q:\Cruise_Data\2005-01\CTD files\doc\2005-01-bot-hdr.txt Channel 2: Pressure [decibar] Units: dbars ==> decibar Format: F10.3 ==> F7.1 Channel 5: Fluorescence:URU:Seapoint [mg/m^3] Name: Fluorescence:Seapoint ==> Fluorescence:URU:Seapoint Channel 6: Oxygen:Dissolved:SBE [mL/L] Format: F8.3 ==> F7.2 Channel 14: Nitrate [umol/L] Units: ==> umol/L Channel 16: Silicate [umol/L] Units: ==> umol/L Channel 18: Phosphate [umol/L] Units: ==> umol/L -CLEAN functions: 2006/06/06 14:34:01 20 Reset #RECS, MIN & MAX values in header. Change Pad Value to -99 in Channel: Oxygen:Dissolved [mL/L] -HEADER EDITS: 2006/06/06 14:56:51 Channel 14: Nitrate_plus_Nitrite [umol/L] Name: Nitrate ==> Nitrate_plus_Nitrite Channel 15: Flag:Nitrate_plus_Nitrite [] Name: Flag:Nitrate ==> Flag:Nitrate_plus_Nitrite $END *COMMENTS Comments from secondary file: Q:\Cruise_Data\2005-01\CTD files\test\2005-01-0073.chl1 ------------------------------------------------------- Sample_Number 384: data matches CTD fluoro Analysis methods: ----------------- Salinity samples are collected in glass bottles and analyzed on Guildline model 8410 Portasal Salinometers which are standardized with IAPSO standard seawater. Oxygen samples are analyzed on an automated Winkler titration system following the procedures of Carpenter (1965). A Brinkmann model 665 Dosimat and model PC910 Colorimeter is controlled by Visual-Basic program to titrate the oxygen samples. Nutrient samples are analyzed fresh on board using a Technicon AAII auto- analyzer following methods described in Barwell-Clarke and Whitney (1996). Chlorophyll samples are collected in duplicate in calibrated polycarbonate bottles (~330ml), then filtered onto 25mm MFS GF/75 filters at <70mmHg vacuum. The filters are placed in glass scintillation vials and immediately frozen at -20ºC until analysis. The chlorophyll is extracted in 10 ml of 90% acetone for 24h at -20ºC, then brought to room temperature and the extract is decanted and measured using a Turner Designs 10-AU-005-CE fluorometer, which has been calibrated with solutions of commercially prepared chlorophyll. chl a filtered on board (Jeri Butcher), not analysed on board Chlorophyll analyzed by S. Toews at IOS using calibration factors Feb.2005 References: 1. Carpenter, J.H. 1965. The Chesapeake Bay Institute Technique for the Winkler Dissolved Oxygen Method. Limmnol. & Oceanogr., 10: 141-143. 2. J. Barwell-Clarke and F. Whitney. 1996. Institute of Ocean Sciences Nutrient Methods and Analysis. Canadian Technical Report of Hydrography and Ocean Sciences, No. 182, 43 pp. ************************************************************************** There were problems with the calibration of the SBE salinity. The salinometer malfunctioned and data run before and after repair look notably different. The later data has been used for recalibration, but there remain some doubts about it. The SBE dissolved oxygen sensor data were recalibrated differently for the earlier casts. Anoxic conditions during cast #1 may have affected the sensor up to cast #15. All casts from #15 onward were treated the same. The DO comparison with bottles had more scatter than usual. ************************************************************************** *CALIBRATION $TABLE: CORRECTED CHANNELS ! Name Units Fmla Pad Coefficients ! ---------------------- -------- ---- ------ ------------ Oxygen:Dissolved:SBE mL/L 10 -99 () (0.449E-01 1.5007) Salinity:T1:C1 PSS-78 10 -99 () (0.44E-02 1) $END !-1-- --2--- ---3---- --4-- ---5--- --6--- ---7---- 8- -9-- ---10--- - ---12-- - --14- - --16- - --18-- - ---20-- - !Samp Pressu Temperat Trans Fluores Oxygen Salinity Bo Numb Salinity F Oxygen: F Nitra F Silic F Phosph F Chlorop F !le_ re ure: missi cence: : :T1:C1 tt er_o :Bottle l Dissolv l te_ l ate l ate l hyll: l !Numb Secondar vity URU: Dissol ~u ~bin ~ ed ~ plus_ ~ ~ ~ Extract ~ !er y Seapoin ved: mb _rec l e Nitri t t t ed e ! t SBE er ords e d te e e e d !---- ------ -------- ----- ------- ------ -------- -- ---- -------- - ------- - ----- - ----- - ------ - ------- - *END OF HEADER 389 4.5 8.5342 41.9 1.720 6.75 32.5807 24 121 32.5818 0 6.726 0 9.5 0 12.1 0 1.05 0 0.594 0 388 10.2 8.5339 47.7 1.619 6.74 32.5811 23 121 32.5820 0 6.725 0 9.5 0 12.1 0 1.05 0 0.587 0 387 25.2 8.5367 47.7 1.575 6.74 32.5806 22 121 32.5830 0 6.746 0 9.7 0 12.1 0 1.05 0 0.549 0 386 50.7 8.5387 47.8 1.584 6.74 32.5811 21 121 -99.0000 0 6.702 0 9.4 0 12.1 0 1.05 0 0.599 0 385 77.0 8.2547 51.2 0.719 6.62 32.6063 20 121 -99.0000 0 6.632 0 10.7 0 13.7 0 1.15 0 0.327 0 384 100.4 7.0109 53.4 0.172 6.30 32.9113 19 121 -99.0000 0 6.368 0 15.0 0 18.2 0 1.37 0 0.025 0 383 125.1 6.3268 53.7 0.136 5.83 33.3205 18 121 -99.0000 0 5.920 0 18.4 0 23.2 0 1.51 0 -99.000 0 382 148.8 6.7058 53.7 0.135 5.27 33.7292 17 121 -99.0000 0 5.332 0 20.6 0 28.4 0 1.57 0 -99.000 0 381 175.6 6.6246 53.6 0.131 4.97 33.8210 16 121 -99.0000 0 5.052 0 22.4 0 33.1 0 1.67 0 -99.000 0 380 200.7 6.3297 53.6 0.129 4.68 33.8325 15 121 -99.0000 0 4.581 0 23.9 0 37.8 0 1.78 0 -99.000 0 379 251.7 5.6332 53.6 0.131 3.77 33.8401 14 121 -99.0000 0 3.898 0 28.3 0 49.9 0 2.10 0 -99.000 0 378 301.6 5.2349 53.6 0.133 2.84 33.8704 13 121 -99.0000 0 2.907 0 33.2 0 62.0 0 2.43 0 -99.000 0 377 398.9 4.6251 53.8 0.136 1.88 33.9430 12 121 -99.0000 0 1.906 0 38.5 0 78.6 0 2.79 0 -99.000 0 376 600.3 4.0231 53.9 0.138 0.96 34.1012 11 121 -99.0000 0 0.962 0 42.9 0 103.4 0 3.09 0 -99.000 0 375 801.7 3.5665 53.9 0.140 0.54 34.2457 10 121 -99.0000 0 0.499 0 44.5 0 124.3 0 3.21 0 -99.000 0 374 1000.5 3.1027 53.9 0.141 0.37 34.3421 9 121 -99.0000 0 0.314 0 45.2 0 140.5 0 3.27 0 -99.000 0 373 1250.3 2.7171 53.9 0.141 0.37 34.4310 8 121 -99.0000 0 0.317 0 45.7 0 155.8 0 3.29 0 -99.000 0 372 1500.8 2.4204 54.0 0.140 0.54 34.5011 7 121 -99.0000 0 0.489 0 45.3 6 165.3 6 3.25 6 -99.000 0 371 2001.5 1.9618 54.0 0.133 1.24 34.5890 6 121 -99.0000 0 1.244 0 43.2 0 175.5 0 3.09 0 -99.000 0 370 2501.5 1.7230 54.0 0.133 1.86 34.6319 5 121 -99.0000 0 1.899 0 41.6 0 176.4 0 2.96 0 -99.000 0 369 3001.6 1.5811 54.0 0.134 2.41 34.6575 4 121 -99.0000 0 2.497 0 39.7 0 174.0 0 2.82 0 -99.000 0 368 3500.4 1.5101 54.0 0.132 2.81 34.6744 3 121 34.6747 0 2.923 0 38.5 0 172.4 0 2.73 0 -99.000 0 367 3998.8 1.5086 54.0 0.130 3.01 34.6823 2 121 34.6811 0 3.125 0 38.1 0 173.1 0 2.69 0 -99.000 0 366 4296.1 1.5347 53.7 0.132 3.03 34.6846 1 121 34.6865 0 3.264 0 38.2 0 177.4 0 2.68 0 -99.000 0