*2014/11/20 09:54:37.51 *IOS HEADER VERSION 1.10 2011/10/26 2011/10/26 *FILE START TIME : UTC 2005/02/18 15:33:59.000 TIME INCREMENT : 0 0 0 0.416667E-01 0 ! (day hr min sec ms) NUMBER OF RECORDS : 24 DATA DESCRIPTION : Bottle:Rosette:Up:Stop + CTD:Up FILE TYPE : ASCII NUMBER OF CHANNELS : 23 $TABLE: CHANNELS ! No Name Units Minimum Maximum !--- --------------------------------- --------------- -------------- -------------- 1 Sample_Number n/a 258 281 2 Pressure decibar 4.7 4310.6 3 Temperature:Secondary 'deg C (ITS90)' 1.5069 6.6842 4 Transmissivity %/metre 47.3 53.4 5 Fluorescence:URU:Seapoint mg/m^3 0.134 0.994 6 Oxygen:Dissolved:SBE mL/L 0.42 6.97 7 Salinity:T1:C1 PSS-78 32.5906 34.6853 8 Bottle_Number n/a 1 24 9 Number_of_bin_records n/a 121 121 10 Salinity:Bottle PSS-78 32.5898 34.6861 11 Flag:Salinity:Bottle n/a 12 Oxygen:Dissolved mL/L 0.375 6.975 13 Flag:Oxygen:Dissolved n/a 14 Nitrate_plus_Nitrite umol/L 14.4 45.5 15 Flag:Nitrate_plus_Nitrite n/a 16 Silicate umol/L 18.5 176.4 17 Flag:Silicate n/a 18 Phosphate umol/L 1.37 3.29 19 Flag:Phosphate n/a 20 Carbon:Dissolved:Inorganic umol/kg 2031.17 2389.95 21 Flag:Carbon:Dissolved:Inorganic n/a 22 Alkalinity:Total umol/kg 2179.5 2425.6 23 Flag:Alkalinity:Total n/a $END $TABLE: CHANNEL DETAIL ! No Pad Start Width Format Type Decimal_Places !--- ---- ----- ----- ------ ---- -------------- 1 -99 ' ' 5 I I 0 2 -99 ' ' 7 F ' ' 1 3 -99 ' ' 9 F ' ' 4 4 -99 ' ' 6 F ' ' 1 5 -99 ' ' 8 F ' ' 3 6 -99 ' ' 7 F ' ' 2 7 -99 ' ' 9 F ' ' 4 8 -99 ' ' 3 I I 0 9 ' ' ' ' 5 I I 0 10 -99 ' ' 9 F R4 4 11 0 ' ' 2 NQ C ' ' 12 -99 ' ' 8 F ' ' 3 13 0 ' ' 2 NQ C ' ' 14 -99 ' ' 6 F R4 1 15 0 ' ' 2 NQ C ' ' 16 -99 ' ' 6 F R4 1 17 0 ' ' 2 NQ C ' ' 18 -99 ' ' 7 F R4 2 19 0 ' ' 2 NQ C ' ' 20 -99 ' ' ' ' F8.2 R4 ' ' 21 0 ' ' 3 NQ C ' ' 22 -99 ' ' ' ' F8.2 R4 ' ' 23 0 ' ' 3 NQ C ' ' $END $REMARKS Flag channels initialized with zeros. Non-zero values have the following significance: -------------------------------------------------------------------------------------- 1 = Sample for this measurement was drawn from water bottle but not analyzed (not normally used). 2 = Acceptable measurement (not normally used). 3 = Questionable measurement (no problem observed in sampling or analysis, but value is not trusted, nonetheless; includes outlyers). 4 = Bad measurement (known problem with sampling or analysis, but not serious enough to completely discard the value). 5 = Not reported (lost sample; unredeemably bad measurement). 6 = Mean of replicate measurements. 7 = Manual chromatographic peak measurement. 8 = Irregular digital chromatographic peak integration. 9 = Sample not drawn for this measurement from this bottle (not normally used). -------------------------------------------------------------------------------------- $END *ADMINISTRATION MISSION : 2005-01 AGENCY : IOS, Ocean Science and Productivity, Sidney, B.C. COUNTRY : Canada PROJECT : Line P SCIENTIST : Robert M. PLATFORM : John P. Tully *LOCATION GEOGRAPHIC AREA : North East Pacific STATION : P 26 DEEP EVENT NUMBER : 57 LATITUDE : 49 59.99000 N ! (deg min) LONGITUDE : 144 59.55000 W ! (deg min) *INSTRUMENT TYPE : Sea-Bird CTD MODEL : SBE-911plus SERIAL NUMBER : 0443 $TABLE: SENSORS ! Name Abs Depth Serial No ! ------------------------- -------------- ---------- temperature:primary ' ' 2668 conductivity:primary ' ' 2399 pressure ' ' 63507 temperature:secondary ' ' 2106 conductivity:secondary ' ' 1763 Fluorometer ' ' Seapoint transmissometer:primary ' ' 333DR Oxygen:SBE ' ' 0766 irradiance:primary ' ' 4656 altimeter: ' ' ' ' $END $REMARKS SOFTWARE VERSION SEASAVE WIN32 V 5.32 Comments from secondary file: Q:\Cruise_Data\2005-01\CTD files\hydro\2005-01-0057.add ------------------------------------------------------- Dissolved oxygen concentration determined using an automated titration system consisting of a Brinkman dosimat (model 665) and a PC 900 Colorimeter. $END *HISTORY $TABLE: PROGRAMS ! Name Vers Date Time Recs In Recs Out ! ------------------------ ------ ---------- -------- --------- --------- SBE_IOS 2.9 2005/03/31 16:11:44 2904 2904 CLEAN 4.7.1 2005/03/31 16:12:43 2904 2904 ADDSAMP 3.4 2005/04/01 12:01:13 2904 2904 BINAVE 4.1 2005/04/01 12:02:11 2904 24 MERGE 3.3 2005/05/26 09:06:46 24 24 MERGE 3.3 2005/05/26 09:06:58 24 24 MERGE 3.3 2005/05/26 09:11:18 24 24 CALIB 11.4 2005/05/27 14:10:56 24 24 MERGE 3.3 2005/06/06 16:48:08 24 24 CLEAN 4.8 2005/06/06 16:49:05 ? ? SORT 3.5 2005/06/06 16:49:26 24 24 REMOVECH 7.0 2005/06/06 16:49:59 24 24 HDREDIT2 2.5 2005/06/06 16:52:18 ? ? CLEAN 5.0 2006/06/06 14:35:32 24 24 HDREDIT2 2.5.1 2006/06/06 14:56:32 ? ? SORT 3.5 2010/04/11 16:33:31 24 24 MERGE 3.3 2010/04/11 16:34:05 24 24 HDREDIT2 2.5.1 2010/04/11 16:37:11 ? ? SORT 3.5 2010/04/11 16:39:44 24 24 CHANGE_FLAGS 1.0 2013/07/16 11:47:56 24 24 CHANGE_CTD_CHANNEL_NAMES 1.0 2013/12/16 15:31:55 24 24 CHANGE_FLAGS 2.0 2014/11/20 09:54:37 24 24 $END $REMARKS -CLEAN functions: 2005/03/31 16:12:12 20 Interpolation by Channel 1: Scan_Number [n/a] in Pressure Change Pad Value to -99 in Channel: Oxygen:Dissolved:SBE [mL/L] Set event to last 4 characters of file name -The following ADDSAMP parameters were used: Sample Number Lookup File: Q:\Cruise_Data\2005-01\CTD files\hydro\addsamp.csv Bottle Channel Name: Bottle_Number -The following BINAVE parameters were used: Bin channel = Bottle_Number Averaging interval = 1.00 Minimum bin value = 0.000 Average value was used Interpolated values were NOT used for empty bins Channel 'NUMBER_OF_BIN_RECORDS' was added to file. -The following MERGE parameters were used: 2005/05/26 09:06:44 2005/05/26 09:06:44 2005/05/26 09:06: Merge Channel: Sample_Number Merge Scheme Used: Add Secondary to Primary Overlap Scheme Used: Keep Primary Primary Channels to Include: ALL Secondary Channels to Include: Salinity:Bottle, Flag:Salinity:Bottle Primary file : Q:\Cruise_Data\2005-01\CTD files\hydro\2005-01-0057.samavg Secondary file: Q:\Cruise_Data\2005-01\CTD files\hydro\2005-01-0057.sal -The following MERGE parameters were used: 2005/05/26 09:06:57 2005/05/26 09:06:57 2005/05/26 09:06: Merge Channel: Sample_Number Merge Scheme Used: Add Secondary to Primary Overlap Scheme Used: Keep Primary Primary Channels to Include: ALL Secondary Channels to Include: Oxygen:Dissolved, Flag:Oxygen:Dissolved Primary file : Q:\Cruise_Data\2005-01\CTD files\hydro\2005-01-0057.mrg1 Secondary file: Q:\Cruise_Data\2005-01\CTD files\hydro\2005-01-0057.add Comments from secondary file: Q:\Cruise_Data\2005-01\CTD files\hydro\2005-01-0057.add ------------------------------------------------------- C.H. Culbertson's paper on Dissolved Oxygen in the 'Woce Hydrographic Program Operations and Methods - July 1991' -The following MERGE parameters were used: 2005/05/26 09:11:18 2005/05/26 09:11:18 2005/05/26 09:11: Merge Channel: Sample_Number Merge Scheme Used: Add Secondary to Primary Overlap Scheme Used: Keep Primary Primary Channels to Include: ALL Secondary Channels to Include: Nitrate, Flag:Nitrate, Silicate, Flag:Silicate, Phosphate, Flag:Phosphate Primary file : Q:\Cruise_Data\2005-01\CTD files\hydro\2005-01-0057.mrg2 Secondary file: Q:\Cruise_Data\2005-01\CTD files\hydro\2005-01-0057.nut1 Comments from secondary file: Q:\Cruise_Data\2005-01\CTD files\hydro\2005-01-0057.nut1 -------------------------------------------------------- -SORT parameters: 2005/05/26 09:10:03 Sorted in ascending order of channel Sample_Number -The following CALIB parameters were used: Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = Q:\Cruise_Data\2005-01\CTD files\hydro\2005-01-recal.ccf Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 12 Oxygen:Dissolved:SBE mL/L 10 0.4490000E-01 0.1500700E+01 15 Salinity:T1:C1 PSS-78 10 0.4400000E-02 0.1000000E+01 -MERGE *** Secondary file not found *** Primary file : Q:\Cruise_Data\2005-01\CTD files\test\2005-01-0057.mrgcor1 Secondary file: Q:\Cruise_Data\2005-01\CTD files\test\2005-01-0057.chl1 -CLEAN functions: 2005/06/06 16:49:04 20 Remove Sea-Bird comments from the header. -SORT parameters: 2005/06/06 16:49:26 Sorted in ascending order of channel Pressure -REMOVECH 2005/06/06 16:49:59 The following CHANNEL(S) were removed: Scan_Number Temperature:Primary [deg C (ITS90)] Conductivity:Primary [S/m] Conductivity:Secondary [S/m] Altimeter [metres] Oxygen:Voltage:SBE [volts] PAR [uE/m^2/sec] Salinity:T0:C0 [PSS-78] Descent_Rate [m/s] Flag -HEADER EDITS: 2005/06/06 16:52:18 Applied edit header: Q:\Cruise_Data\2005-01\CTD files\doc\2005-01-bot-hdr.txt Channel 2: Pressure [decibar] Units: dbars ==> decibar Format: F10.3 ==> F7.1 Channel 5: Fluorescence:URU:Seapoint [mg/m^3] Name: Fluorescence:Seapoint ==> Fluorescence:URU:Seapoint Channel 6: Oxygen:Dissolved:SBE [mL/L] Format: F8.3 ==> F7.2 Channel 14: Nitrate [umol/L] Units: ==> umol/L Channel 16: Silicate [umol/L] Units: ==> umol/L Channel 18: Phosphate [umol/L] Units: ==> umol/L -CLEAN functions: 2006/06/06 14:34:01 20 Reset #RECS, MIN & MAX values in header. Change Pad Value to -99 in Channel: Oxygen:Dissolved [mL/L] -HEADER EDITS: 2006/06/06 14:56:32 Channel 14: Nitrate_plus_Nitrite [umol/L] Name: Nitrate ==> Nitrate_plus_Nitrite Channel 15: Flag:Nitrate_plus_Nitrite [] Name: Flag:Nitrate ==> Flag:Nitrate_plus_Nitrite -SORT parameters: 2010/04/11 16:33:31 Sorted in ascending order of channel Sample_Number -The following MERGE parameters were used: 2010/04/11 16:34:04 2010/04/11 16:34:04 2010/04/11 16:34: Merge Channel: Sample_Number Merge Scheme Used: Add Secondary to Primary Overlap Scheme Used: Average Primary Channels to Include: ALL Secondary Channels to Include: Carbon:Dissolved:Inorganic, Flag:Carbon:Dissolved:Inorganic, Alkalinity:Total, Flag:Alkalinity:Total Primary file : H:\Cruise_Data_Processing\Lisa Miller's Carbon Data\2005-01\2005-01-0057.chesrt Secondary file: H:\Cruise_Data_Processing\Lisa Miller's Carbon Data\2005-01\2005-01-0057.iossrt Comments from secondary file: H:\Cruise_Data_Processing\Lisa Miller's Carbon Data\2005-01\2005-01-0057.iossrt --------------------------------------------------------------------------- -SORT parameters: 2010/04/11 16:33:03 Sorted in ascending order of channel Sample_Number -HEADER EDITS: 2010/04/11 16:37:11 Applied edit header: H:\Cruise_Data_Processing\Lisa Miller's Carbon Data\DIC_ALK.txt -SORT parameters: 2010/04/11 16:39:44 Sorted in ascending order of channel Pressure $END *COMMENTS Comments from secondary file: Q:\Cruise_Data\2005-01\CTD files\hydro\2005-01-0057.sal ------------------------------------------------------- Sample_Number 270: duplicate (33.9055/33.9062) Comments from secondary file: Q:\Cruise_Data\2005-01\CTD files\hydro\2005-01-0057.add ------------------------------------------------------- Oxygen flag c- colourimeter read 78% transmission at end of titration; usually is over 95%. A duplicate sample for bottle #13, 300db, (sample #9270) had DO = 1.364 Analysis methods: ----------------- Salinity samples are collected in glass bottles and analyzed on Guildline model 8410 Portasal Salinometers which are standardized with IAPSO standard seawater. Oxygen samples are analyzed on an automated Winkler titration system following the procedures of Carpenter (1965). A Brinkmann model 665 Dosimat and model PC910 Colorimeter is controlled by Visual-Basic program to titrate the oxygen samples. Nutrient samples are analyzed fresh on board using a Technicon AAII auto- analyzer following methods described in Barwell-Clarke and Whitney (1996). Chlorophyll samples are collected in duplicate in calibrated polycarbonate bottles (~330ml), then filtered onto 25mm MFS GF/75 filters at <70mmHg vacuum. The filters are placed in glass scintillation vials and immediately frozen at -20ºC until analysis. The chlorophyll is extracted in 10 ml of 90% acetone for 24h at -20ºC, then brought to room temperature and the extract is decanted and measured using a Turner Designs 10-AU-005-CE fluorometer, which has been calibrated with solutions of commercially prepared chlorophyll. chl a filtered on board (Jeri Butcher), not analysed on board Chlorophyll analyzed by S. Toews at IOS using calibration factors Feb.2005 Dissolved inorganic carbon (DIC) was determined using coulometric analysis. Total alkalinity (Alk) was determined by potentiometric titration. Complete documentation on DIC and ALK sampling, analysis and precision estimates can be found in the Carbon Excel file from the cruise located in the cruise "DOC" directory. . References: 1. Carpenter, J.H. 1965. The Chesapeake Bay Institute Technique for the Winkler Dissolved Oxygen Method. Limmnol. & Oceanogr., 10: 141-143. 2. J. Barwell-Clarke and F. Whitney. 1996. Institute of Ocean Sciences Nutrient Methods and Analysis. Canadian Technical Report of Hydrography and Ocean Sciences, No. 182, 43 pp. ************************************************************************** There were problems with the calibration of the SBE salinity. The salinometer malfunctioned and data run before and after repair look notably different. The later data has been used for recalibration, but there remain some doubts about it. The SBE dissolved oxygen sensor data were recalibrated differently for the earlier casts. Anoxic conditions during cast #1 may have affected the sensor up to cast #15. All casts from #15 onward were treated the same. The DO comparison with bottles had more scatter than usual. ************************************************************************** *CALIBRATION $TABLE: CORRECTED CHANNELS ! Name Units Fmla Pad Coefficients ! ---------------------- -------- ---- ------ ------------ Oxygen:Dissolved:SBE mL/L 10 -99 () (0.449E-01 1.5007) Salinity:T1:C1 PSS-78 10 -99 () (0.44E-02 1) $END !-1-- --2--- ---3---- --4-- ---5--- --6--- ---7---- 8- -9-- ---10--- - ---12-- - --14- - --16- - --18-- - ---20-- 21 ---22-- 23 !Samp Pressu Temperat Trans Fluores Oxygen Salinity Bo Numb Salinity F Oxygen: F Nitra F Silic F Phosph F Carbon: Fl Alkalin Fl !le_ re ure: missi cence: : :T1:C1 tt er_o :Bottle l Dissolv l te_ l ate l ate l Dissolv ag ity: ag !Numb Secondar vity URU: Dissol ~u ~bin ~ ed ~ plus_ ~ ~ ~ ed: ~g Total ~T !er y Seapoin ved: mb _rec l e Nitri t t t Inorgan an ot ! t SBE er ords e d te e e e ic ic al !---- ------ -------- ----- ------- ------ -------- -- ---- -------- - ------- - ----- - ----- - ------ - ------- -- ------- -- *END OF HEADER 281 4.7 6.6808 47.3 0.849 6.97 32.5906 24 121 32.5905 0 6.954 0 14.4 0 18.5 0 1.38 0 2031.17 0 2179.50 0 280 11.6 6.6790 49.8 0.913 6.96 32.5910 23 121 32.5922 0 6.966 0 14.4 0 18.5 0 1.37 0 2036.64 0 2183.90 0 279 25.7 6.6814 49.8 0.870 6.96 32.5910 22 121 32.5898 0 6.954 0 14.4 0 18.5 0 1.38 0 2035.09 0 2188.50 0 278 50.6 6.6842 49.8 0.994 6.94 32.5910 21 121 32.5911 0 6.912 0 14.4 0 18.5 0 1.38 0 2035.81 0 2192.60 0 277 74.7 6.6841 49.9 0.956 6.91 32.5919 20 121 32.5961 0 6.975 0 14.4 0 18.7 0 1.38 0 2036.06 0 2192.00 0 276 98.5 6.6682 50.8 0.725 6.83 32.5970 19 121 32.5995 0 6.901 0 14.6 0 18.6 0 1.39 0 2032.85 0 2191.90 0 275 123.5 5.5711 52.6 0.200 5.20 33.1273 18 121 33.1213 0 5.292 0 24.1 0 35.1 0 1.92 0 2118.22 0 2223.60 0 274 149.2 5.0838 52.8 0.153 3.80 33.5689 17 121 33.5662 0 3.888 0 30.5 0 48.3 0 2.27 0 2188.05 0 2250.10 0 273 175.0 4.9741 52.8 0.138 3.16 33.6964 16 121 33.6903 0 3.290 0 33.2 0 55.2 0 2.44 0 2211.49 0 2264.00 0 272 202.8 4.8403 52.9 0.137 2.63 33.7710 15 121 33.7677 0 2.570 0 35.7 0 62.5 0 2.61 0 2235.42 0 2272.60 0 271 250.9 4.7074 53.0 0.139 1.89 33.8482 14 121 33.8461 0 1.949 0 39.1 0 71.6 0 2.81 0 2266.20 0 2275.60 0 270 300.6 4.4991 53.1 0.141 1.36 33.9122 13 121 33.9055 6 1.406 0 41.9 6 80.1 6 2.97 6 2290.75 0 2294.70 0 269 402.6 4.1928 53.3 0.140 0.90 34.0219 12 121 34.0210 0 0.929 0 43.5 0 94.6 0 3.14 0 2313.82 0 2305.80 0 268 598.9 3.7948 53.3 0.143 0.50 34.1829 11 121 34.1804 0 0.455 0 44.6 0 115.6 0 3.24 0 2340.21 0 2329.20 0 267 828.0 3.3189 53.3 0.143 0.43 34.3012 10 121 34.3029 0 0.375 0 45.0 0 134.0 0 3.28 0 2362.82 0 2347.70 0 266 999.9 2.9784 53.3 0.143 0.42 34.3724 9 121 34.3711 0 0.378 0 45.4 0 145.7 0 3.29 0 2379.37 0 2372.80 0 265 1248.5 2.6005 53.3 0.143 0.47 34.4481 8 121 34.4504 0 0.434 0 45.5 0 157.8 0 3.27 0 2386.44 0 2383.20 0 264 1500.7 2.3174 53.3 0.141 0.68 34.5058 7 121 34.5052 0 0.623 0 45.1 0 167.1 0 3.24 0 2389.95 0 2391.50 0 263 2001.5 1.9435 53.4 0.142 1.30 34.5849 6 121 34.5834 0 1.293 0 43.2 0 174.3 0 3.10 0 2379.33 0 2408.30 0 262 2499.9 1.7345 53.4 0.134 1.89 34.6271 5 121 34.6270 0 1.899 0 41.5 0 176.4 0 2.96 0 2367.62 6 2413.00 6 261 2998.5 1.5849 53.4 0.136 2.46 34.6565 4 121 34.6590 0 2.505 0 39.9 0 175.1 0 2.83 0 2349.03 0 2417.20 0 260 3501.1 1.5232 53.4 0.134 2.84 34.6721 3 121 34.6713 0 2.890 0 38.7 0 173.5 0 2.75 0 2337.20 0 2425.60 0 259 3999.7 1.5069 53.3 0.135 3.09 34.6816 2 121 34.6811 0 3.153 0 37.9 0 173.4 0 2.70 0 2331.02 0 2413.50 0 258 4310.6 1.5159 52.9 0.134 3.18 34.6853 1 121 34.6861 0 3.354 3 37.8 0 174.5 0 2.67 0 2330.88 0 2424.80 0