*2014/11/20 09:54:36.74 *IOS HEADER VERSION 1.10 2011/10/26 2011/10/26 *FILE START TIME : UTC 2005/02/14 05:04:27.000 TIME INCREMENT : 0 0 0 0.416667E-01 0 ! (day hr min sec ms) NUMBER OF RECORDS : 14 DATA DESCRIPTION : Bottle:Rosette:Up:Stop + CTD:Up FILE TYPE : ASCII NUMBER OF CHANNELS : 19 $TABLE: CHANNELS ! No Name Units Minimum Maximum !--- ---------------------------- --------------- -------------- -------------- 1 Sample_Number n/a 105 118 2 Pressure decibar 1.3 202.9 3 Temperature:Secondary 'deg C (ITS90)' 6.5995 8.4456 4 Transmissivity %/metre 24.9 54.1 5 Fluorescence:URU:Seapoint mg/m^3 0.141 0.594 6 Oxygen:Dissolved:SBE mL/L 2.69 6.87 7 Salinity:T1:C1 PSS-78 32.2931 33.901 8 Bottle_Number n/a 1 14 9 Number_of_bin_records n/a 121 121 10 Nitrate_plus_Nitrite umol/L 6.7 32.5 11 Flag:Nitrate_plus_Nitrite n/a 12 Silicate umol/L 6.8 51 13 Flag:Silicate n/a 14 Phosphate umol/L 0.89 2.36 15 Flag:Phosphate n/a 16 Chlorophyll:Extracted mg/m^3 0.27E-01 0.146 17 Flag:Chlorophyll:Extracted n/a 18 Dimethyl_Sulphide nmol/L 0 1.67 19 Flag:Dimethyl_Sulphide n/a $END $TABLE: CHANNEL DETAIL ! No Pad Start Width Format Type Decimal_Places !--- ---- ----- ----- ------ ---- -------------- 1 -99 ' ' 5 I I 0 2 -99 ' ' 7 F ' ' 1 3 -99 ' ' 9 F ' ' 4 4 -99 ' ' 6 F ' ' 1 5 -99 ' ' 8 F ' ' 3 6 -99 ' ' 7 F ' ' 2 7 -99 ' ' 9 F ' ' 4 8 -99 ' ' 3 I I 0 9 ' ' ' ' 5 I I 0 10 -99 ' ' 6 F R4 1 11 0 ' ' 2 NQ C ' ' 12 -99 ' ' 6 F R4 1 13 0 ' ' 2 NQ C ' ' 14 -99 ' ' 7 F R4 2 15 0 ' ' 2 NQ C ' ' 16 -99 ' ' 8 F R4 3 17 0 ' ' 2 NQ C ' ' 18 -99 ' ' ' ' F7.2 R4 ' ' 19 0 ' ' 2 NQ C ' ' $END $REMARKS Flag channels initialized with zeros. Non-zero values have the following significance: -------------------------------------------------------------------------------------- 1 = Sample for this measurement was drawn from water bottle but not analyzed (not normally used). 2 = Acceptable measurement (not normally used). 3 = Questionable measurement (no problem observed in sampling or analysis, but value is not trusted, nonetheless; includes outlyers). 4 = Bad measurement (known problem with sampling or analysis, but not serious enough to completely discard the value). 5 = Not reported (lost sample; unredeemably bad measurement). 6 = Mean of replicate measurements. 7 = Manual chromatographic peak measurement. 8 = Irregular digital chromatographic peak integration. 9 = Sample not drawn for this measurement from this bottle (not normally used). -------------------------------------------------------------------------------------- $END *ADMINISTRATION MISSION : 2005-01 AGENCY : IOS, Ocean Science and Productivity, Sidney, B.C. COUNTRY : Canada PROJECT : Line P SCIENTIST : Robert M. PLATFORM : John P. Tully *LOCATION GEOGRAPHIC AREA : North East Pacific STATION : P12 EVENT NUMBER : 23 LATITUDE : 48 58.03000 N ! (deg min) LONGITUDE : 130 39.83000 W ! (deg min) WATER DEPTH : 3243 *INSTRUMENT TYPE : Sea-Bird CTD MODEL : SBE-911plus SERIAL NUMBER : 0443 $TABLE: SENSORS ! Name Abs Depth Serial No ! ------------------------- -------------- ---------- temperature:primary ' ' 2668 conductivity:primary ' ' 2399 pressure ' ' 63507 temperature:secondary ' ' 2106 conductivity:secondary ' ' 1763 Fluorometer ' ' Seapoint transmissometer:primary ' ' 333DR Oxygen:SBE ' ' 0766 irradiance:primary ' ' 4656 pH ' ' 180293 $END $REMARKS SOFTWARE VERSION SEASAVE WIN32 V 5.32 $END *HISTORY $TABLE: PROGRAMS ! Name Vers Date Time Recs In Recs Out ! ------------------------ ------ ---------- -------- --------- --------- SBE_IOS 2.9 2005/03/31 16:11:34 1694 1694 CLEAN 4.7.1 2005/03/31 16:12:27 1694 1694 ADDSAMP 3.4 2005/04/01 12:00:55 1694 1694 BINAVE 4.1 2005/04/01 12:02:01 1694 14 MERGE 3.3 2005/05/26 09:06:45 14 14 MERGE 3.3 2005/05/26 09:06:58 14 14 MERGE 3.3 2005/05/26 09:11:18 14 14 CALIB 11.4 2005/05/26 12:08:36 14 14 MERGE 3.3 2005/06/06 16:48:07 14 14 CLEAN 4.8 2005/06/06 16:49:04 ? ? SORT 3.5 2005/06/06 16:49:25 14 14 REMOVECH 7.0 2005/06/06 16:49:58 14 14 HDREDIT2 2.5 2005/06/06 16:52:17 ? ? CLEAN 5.0 2006/06/06 14:34:38 14 14 HDREDIT2 2.5.1 2006/06/06 14:56:11 ? ? CHANGE_FLAGS 1.0 2013/07/16 11:47:56 14 14 SORT 3.6 2013/10/28 16:24:47 14 14 MERGE 3.5 2013/10/28 16:30:40 14 14 SORT 3.6 2013/10/28 16:32:23 14 14 HDREDIT2 2.6 2013/10/28 16:32:31 ? ? CHANGE_CTD_CHANNEL_NAMES 1.0 2013/12/16 15:31:54 14 14 CHANGE_FLAGS 2.0 2014/11/20 09:54:36 14 14 $END $REMARKS -CLEAN functions: 2005/03/31 16:12:12 20 Interpolation by Channel 1: Scan_Number [n/a] in Pressure Change Pad Value to -99 in Channel: Oxygen:Dissolved:SBE [mL/L] Set event to last 4 characters of file name -The following ADDSAMP parameters were used: Sample Number Lookup File: Q:\Cruise_Data\2005-01\CTD files\hydro\addsamp.csv Bottle Channel Name: Bottle_Number -The following BINAVE parameters were used: Bin channel = Bottle_Number Averaging interval = 1.00 Minimum bin value = 0.000 Average value was used Interpolated values were NOT used for empty bins Channel 'NUMBER_OF_BIN_RECORDS' was added to file. -MERGE *** Secondary file not found *** Primary file : Q:\Cruise_Data\2005-01\CTD files\hydro\2005-01-0023.samavg Secondary file: Q:\Cruise_Data\2005-01\CTD files\hydro\2005-01-0023.sal -MERGE *** Secondary file not found *** Primary file : Q:\Cruise_Data\2005-01\CTD files\hydro\2005-01-0023.mrg1 Secondary file: Q:\Cruise_Data\2005-01\CTD files\hydro\2005-01-0023.add -The following MERGE parameters were used: 2005/05/26 09:11:18 2005/05/26 09:11:18 2005/05/26 09:11: Merge Channel: Sample_Number Merge Scheme Used: Add Secondary to Primary Overlap Scheme Used: Keep Primary Primary Channels to Include: ALL Secondary Channels to Include: Nitrate, Flag:Nitrate, Silicate, Flag:Silicate, Phosphate, Flag:Phosphate Primary file : Q:\Cruise_Data\2005-01\CTD files\hydro\2005-01-0023.mrg2 Secondary file: Q:\Cruise_Data\2005-01\CTD files\hydro\2005-01-0023.nut1 Comments from secondary file: Q:\Cruise_Data\2005-01\CTD files\hydro\2005-01-0023.nut1 -------------------------------------------------------- -SORT parameters: 2005/05/26 09:10:03 Sorted in ascending order of channel Sample_Number -The following CALIB parameters were used: Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = Q:\Cruise_Data\2005-01\CTD files\hydro\2005-01-recal.ccf Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 11 Oxygen:Dissolved:SBE mL/L 10 0.1032000E+00 0.1484000E+01 14 Salinity:T1:C1 PSS-78 10 0.4400000E-02 0.1000000E+01 -The following MERGE parameters were used: 2005/06/06 16:48:07 2005/06/06 16:48:07 2005/06/06 16:48: Merge Channel: Sample_Number Merge Scheme Used: Add Secondary to Primary Overlap Scheme Used: Keep Primary Primary Channels to Include: ALL Secondary Channels to Include: Chlorophyll:Extracted, Flag:Chlorophyll:Extracted Primary file : Q:\Cruise_Data\2005-01\CTD files\test\2005-01-0023.mrgcor1 Secondary file: Q:\Cruise_Data\2005-01\CTD files\test\2005-01-0023.chl1 Comments from secondary file: Q:\Cruise_Data\2005-01\CTD files\test\2005-01-0023.chl1 ------------------------------------------------------- -SORT parameters: 2005/06/06 16:46:54 Sorted in ascending order of channel Sample_Number -CLEAN functions: 2005/06/06 16:49:04 20 Remove Sea-Bird comments from the header. -SORT parameters: 2005/06/06 16:49:25 Sorted in ascending order of channel Pressure -REMOVECH 2005/06/06 16:49:58 The following CHANNEL(S) were removed: Scan_Number Temperature:Primary [deg C (ITS90)] Conductivity:Primary [S/m] Conductivity:Secondary [S/m] Oxygen:Voltage:SBE [volts] PAR [uE/m^2/sec] Salinity:T0:C0 [PSS-78] pH:SBE [pH Units] Flag -HEADER EDITS: 2005/06/06 16:52:17 Applied edit header: Q:\Cruise_Data\2005-01\CTD files\doc\2005-01-bot-hdr.txt Channel 2: Pressure [decibar] Units: dbars ==> decibar Format: F10.3 ==> F7.1 Channel 5: Fluorescence:URU:Seapoint [mg/m^3] Name: Fluorescence:Seapoint ==> Fluorescence:URU:Seapoint Channel 6: Oxygen:Dissolved:SBE [mL/L] Format: F8.3 ==> F7.2 Channel 10: Nitrate [umol/L] Units: ==> umol/L Channel 12: Silicate [umol/L] Units: ==> umol/L Channel 14: Phosphate [umol/L] Units: ==> umol/L -CLEAN functions: 2006/06/06 14:34:01 20 Reset #RECS, MIN & MAX values in header. -HEADER EDITS: 2006/06/06 14:56:11 Channel 10: Nitrate_plus_Nitrite [umol/L] Name: Nitrate ==> Nitrate_plus_Nitrite Channel 11: Flag:Nitrate_plus_Nitrite [] Name: Flag:Nitrate ==> Flag:Nitrate_plus_Nitrite -SORT parameters: 2013/10/28 16:24:47 Sorted in ascending order of channel Sample_Number -The following MERGE parameters were used: 2013/10/28 16:30:40 Merge Channel: Sample_Number Merge Scheme Used: Add Secondary to Primary Overlap Scheme Used: Keep Secondary Primary Channels to Include: ALL Secondary Channels to Include: Dimethyl_Sulphide, Flag:Dimethyl_Sulphide Primary file : P:\John Pages Archive\2005-01\DMS\2005-01-0023.srt_che Secondary file: P:\John Pages Archive\2005-01\DMS\2005-01-0023.ios -SORT parameters: 2013/10/28 16:32:23 Sorted in ascending order of channel Pressure -HEADER EDITS: 2013/10/28 16:32:31 Applied edit header: P:\John Pages Archive\DMS_Methods post 1999.txt $END *COMMENTS Analysis methods: ----------------- Salinity samples are collected in glass bottles and analyzed on Guildline model 8410 Portasal Salinometers which are standardized with IAPSO standard seawater. Oxygen samples are analyzed on an automated Winkler titration system following the procedures of Carpenter (1965). A Brinkmann model 665 Dosimat and model PC910 Colorimeter is controlled by Visual-Basic program to titrate the oxygen samples. Nutrient samples are analyzed fresh on board using a Technicon AAII auto- analyzer following methods described in Barwell-Clarke and Whitney (1996). Chlorophyll samples are collected in duplicate in calibrated polycarbonate bottles (~330ml), then filtered onto 25mm MFS GF/75 filters at <70mmHg vacuum. The filters are placed in glass scintillation vials and immediately frozen at -20ºC until analysis. The chlorophyll is extracted in 10 ml of 90% acetone for 24h at -20ºC, then brought to room temperature and the extract is decanted and measured using a Turner Designs 10-AU-005-CE fluorometer, which has been calibrated with solutions of commercially prepared chlorophyll. chl a filtered on board (Jeri Butcher), not analysed on board Chlorophyll analyzed by S. Toews at IOS using calibration factors Feb.2005 For DMS methods see file "Method post 1999 for Dimethylsulfide Analysis.docx" in directory \\OSD_Data_Archive\Cruise_Data\Documents\Analysis Reference Papers\. The minimum detectable level for DMS is 0.10 nM, so “0” values should be interpreted as <0.10. . References: 1. Carpenter, J.H. 1965. The Chesapeake Bay Institute Technique for the Winkler Dissolved Oxygen Method. Limmnol. & Oceanogr., 10: 141-143. 2. J. Barwell-Clarke and F. Whitney. 1996. Institute of Ocean Sciences Nutrient Methods and Analysis. Canadian Technical Report of Hydrography and Ocean Sciences, No. 182, 43 pp. ************************************************************************** There were problems with the calibration of the SBE salinity. The salinometer malfunctioned and data run before and after repair look notably different. The later data has been used for recalibration, but there remain some doubts about it. The SBE dissolved oxygen sensor data were recalibrated differently for the earlier casts. Anoxic conditions during cast #1 may have affected the sensor up to cast #15. All casts from #15 onward were treated the same. The DO comparison with bottles had more scatter than usual. ************************************************************************** Comments from secondary file: P:\John Pages Archive\2005-01\DMS\2005-01-0023.ios -------------------------------------------------- Sample_Number 110: DMS: Niskin didn't trip Sample_Number 114: DMS: Sample lost *CALIBRATION $TABLE: CORRECTED CHANNELS ! Name Units Fmla Pad Coefficients ! ---------------------- -------- ---- ------ ------------ Oxygen:Dissolved:SBE mL/L 10 -99 () (0.1032 1.484) Salinity:T1:C1 PSS-78 10 -99 () (0.44E-02 1) $END !-1-- --2--- ---3---- --4-- ---5--- --6--- ---7---- 8- -9-- --10- - --12- - --14-- - ---16-- - --18-- - !Samp Pressu Temperat Trans Fluores Oxygen Salinity Bo Numb Nitra F Silic F Phosph F Chlorop F Dimeth F !le_ re ure: missi cence: : :T1:C1 tt er_o te_ l ate l ate l hyll: l yl_ l !Numb Secondar vity URU: Dissol ~u ~bin plus_ ~ ~ ~ Extract ~ Sulphi ~ !er y Seapoin ved: mb _rec Nitri t t t ed e de d ! t SBE er ords te e e e d e !---- ------ -------- ----- ------- ------ -------- -- ---- ----- - ----- - ------ - ------- - ------ - *END OF HEADER 117 1.3 8.4400 24.9 0.536 6.86 32.2931 13 121 6.8 0 7.3 0 0.89 0 0.124 0 0.40 6 118 5.9 8.4385 49.0 0.513 6.87 32.4211 14 121 6.8 0 7.4 0 0.89 0 0.108 0 1.67 0 116 9.1 8.4384 53.0 0.496 6.85 32.4213 12 121 6.8 0 7.3 0 0.89 0 0.132 0 0.57 0 115 13.8 8.4390 53.0 0.496 6.85 32.4213 11 121 6.8 6 7.1 6 0.89 6 0.106 0 0.00 0 114 19.1 8.4354 53.0 0.486 6.85 32.4214 10 121 6.7 0 6.9 0 0.89 0 0.129 0 -99.00 5 113 24.7 8.4341 53.0 0.509 6.85 32.4215 9 121 6.8 0 7.1 0 0.89 0 0.146 0 0.00 0 112 30.6 8.4456 53.1 0.516 6.85 32.4207 8 121 6.8 0 6.8 0 0.89 0 0.100 0 0.54 0 111 40.7 8.4442 53.0 0.517 6.85 32.4214 7 121 6.7 0 7.0 0 0.89 0 0.125 0 0.00 0 110 52.1 8.4443 53.0 0.569 6.84 32.4215 6 121 -99.0 0 -99.0 0 -99.00 0 -99.000 0 -99.00 5 109 69.7 8.4435 53.0 0.594 6.81 32.4208 5 121 6.7 0 6.9 0 0.89 0 0.129 0 0.00 0 108 99.1 7.1169 53.8 0.191 5.47 33.2340 4 121 18.3 0 22.6 0 1.49 0 0.027 0 0.00 0 107 153.5 7.0187 54.0 0.141 3.53 33.7730 3 121 28.1 0 39.8 0 2.05 0 -99.000 0 0.00 0 106 170.8 6.9728 54.0 0.146 3.04 33.8506 2 121 30.4 0 44.7 0 2.22 0 -99.000 0 0.00 0 105 202.9 6.5995 54.1 0.142 2.69 33.9010 1 121 32.5 0 51.0 0 2.36 0 -99.000 0 0.00 0