*2014/11/20 09:54:27.13 *IOS HEADER VERSION 1.10 2011/10/26 2011/10/26 *FILE START TIME : UTC 2004/06/25 05:31:33.000 TIME INCREMENT : 0 0 0 0.416667E-01 0 ! (day hr min sec ms) NUMBER OF RECORDS : 16 DATA DESCRIPTION : Bottle:Rosette:Up:Stop + CTD:Up FILE TYPE : ASCII NUMBER OF CHANNELS : 21 $TABLE: CHANNELS ! No Name Units Minimum Maximum !--- ---------------------------- --------------- -------------- -------------- 1 Sample_Number n/a 261 276 2 Pressure decibar 1.9 311 3 Temperature:Primary 'deg C (ITS90)' 8.7212 17.4679 4 Transmissivity %/metre 35.8 55.9 5 Oxygen:Dissolved:SBE mL/L 3.13 7.96 6 Fluorescence:URU mg/m^3 0.16 2.741 7 PAR uE/m^2/sec 0.5 3.1 8 PAR:Reference uE/m^2/sec 31.1 31.1 9 Salinity:T0:C0 PSS-78 26.9999 30.6279 10 Bottle_Number n/a 1 16 11 Number_of_bin_records n/a 121 121 12 Oxygen:Dissolved mL/L 3.194 7.745 13 Flag:Oxygen:Dissolved n/a 14 Chlorophyll:Extracted mg/m^3 0.93 5.09 15 Flag:Chlorophyll:Extracted n/a 16 Nitrate_plus_Nitrite umol/L 0 30.3 17 Flag:Nitrate_plus_Nitrite n/a 18 Silicate umol/L 11.6 70.9 19 Flag:Silicate n/a 20 Phosphate umol/L 0.33 2.74 21 Flag:Phosphate n/a $END $TABLE: CHANNEL DETAIL ! No Pad Start Width Format Type Decimal_Places !--- ------ ----- ----- ------ ---- -------------- 1 -9 ' ' 5 I I 0 2 -99 ' ' 7 F ' ' 1 3 -99 ' ' 9 F ' ' 4 4 -99 ' ' 6 F ' ' 1 5 -99 ' ' 7 F ' ' 2 6 -99 ' ' 8 F ' ' 3 7 -99 ' ' 7 F ' ' 1 8 -99 ' ' 7 F ' ' 1 9 -99 ' ' 9 F ' ' 4 10 -99 ' ' 3 I I 0 11 ' ' ' ' 5 I I 0 12 -99.99 ' ' 8 F ' ' 3 13 0 ' ' 2 NQ C ' ' 14 -99 ' ' 7 F R4 2 15 0 ' ' 2 NQ C ' ' 16 -99 ' ' ' ' F6.1 R4 ' ' 17 0 ' ' 2 NQ C ' ' 18 -99 ' ' ' ' F6.1 R4 ' ' 19 0 ' ' 2 NQ C ' ' 20 -99 ' ' ' ' F7.2 R4 ' ' 21 0 ' ' 2 NQ C ' ' $END $REMARKS Flag channels initialized with zeros. Non-zero values have the following significance: -------------------------------------------------------------------------------------- 1 = Sample for this measurement was drawn from water bottle but not analyzed (not normally used). 2 = Acceptable measurement (not normally used). 3 = Questionable measurement (no problem observed in sampling or analysis, but value is not trusted, nonetheless; includes outlyers). 4 = Bad measurement (known problem with sampling or analysis, but not serious enough to completely discard the value). 5 = Not reported (lost sample; unredeemably bad measurement). 6 = Mean of replicate measurements. 7 = Manual chromatographic peak measurement. 8 = Irregular digital chromatographic peak integration. 9 = Sample not drawn for this measurement from this bottle (not normally used). -------------------------------------------------------------------------------------- $END *ADMINISTRATION MISSION : 2004-21 AGENCY : IOS, Ocean Science and Productivity, Sidney, B.C. COUNTRY : Canada PROJECT : JdeF/SoG SCIENTIST : Masson D. PLATFORM : Vector *LOCATION GEOGRAPHIC AREA : Juan de Fuca Strait /Strait of Georgia STATION : 14 EVENT NUMBER : 85 LATITUDE : 49 53.01000 N ! (deg min) LONGITUDE : 124 59.55000 W ! (deg min) WATER DEPTH : 316 ALTIMETER (M) : 6.91 ! custom item $REMARKS Altimeter value is distance from bottom and is calculated as the median of the deepest 2 metres of data. $END *INSTRUMENT TYPE : Sea-Bird CTD MODEL : SBE-911plus SERIAL NUMBER : 0585 $TABLE: SENSORS ! Name Abs Depth Serial No ! ------------------------- -------------- ---------- temperature:primary ' ' 2023 conductivity:primary ' ' 1763 pressure ' ' 77511 temperature:secondary ' ' 2095 conductivity:secondary ' ' 1764 Fluorometer ' ' Seapoint Oxygen:SBE ' ' 0047 transmissometer:primary ' ' 498DR irradiance ' ' primary altimeter: ' ' ' ' surface ' ' 'degrees = 0.0' $END $REMARKS SOFTWARE VERSION SEASAVE WIN32 V 5.30A Comments from secondary file: Q:\Cruise_Data\2004-21\ctd\hydro\2004-21-0085.add1 -------------------------------------------------- Dissolved oxygen concentration determined using an automated titration system consisting of a Brinkman dosimat (model 665) and a PC 900 Colorimeter. $END *HISTORY $TABLE: PROGRAMS ! Name Vers Date Time Recs In Recs Out ! ------------------------ ------ ---------- -------- --------- --------- SBE_IOS 2.8 2004/09/27 12:53:52 1936 1936 CLEAN 4.7.1 2004/09/27 12:54:41 ? ? ADDSAMP 3.4 2004/09/27 16:33:27 1936 1936 BINAVE 4.0.1 2004/09/27 16:38:36 1936 16 MERGE 3.1 2004/09/27 16:38:45 16 16 MERGE 3.1 2004/09/28 10:48:35 16 16 MERGE 3.1 2004/10/01 16:16:00 16 16 CALIB 11.4 2004/10/01 17:10:42 16 16 CLEAN 4.7.1 2004/10/04 16:02:08 ? ? SORT 3.4.1 2004/10/04 16:02:15 16 16 REMOVECH 6.0 2004/10/04 16:02:43 16 16 HDREDIT2 2.3 2004/10/04 16:05:40 ? ? SORT 3.5 2004/11/29 15:56:32 16 16 MERGE 3.3 2004/11/29 15:56:46 16 16 SORT 3.5 2004/11/29 15:59:36 16 16 CHANGE_FLAGS 1.0 2013/07/29 14:29:48 16 16 CHANGE_CTD_CHANNEL_NAMES 1.0 2013/12/16 15:31:03 16 16 CHANGE_FLAGS 2.0 2014/11/20 09:54:27 16 16 $END $REMARKS -CLEAN functions: 2004/09/27 12:54:01 20 Set event to last 4 characters of file name -The following ADDSAMP parameters were used: Sample Number Lookup File: Q:\Cruise_Data\2004-21\ctd\hydro\addsamp.csv Bottle Channel Name: Bottle_Number -The following BINAVE parameters were used: Bin channel = Bottle_Number Averaging interval = 1.00 Minimum bin value = 0.000 Average value was used Interpolated values were NOT used for empty bins Channel 'NUMBER_OF_BIN_RECORDS' was added to file. -MERGE *** Secondary file not found *** Primary file : Q:\Cruise_Data\2004-21\CTD\hydro\2004-21-0085.samavg Secondary file: Q:\Cruise_Data\2004-21\CTD\hydro\2004-21-0085.sal -The following MERGE parameters were used: Merge Channel: Sample_Number Merge Scheme Used: Add Secondary to Primary Overlap Scheme Used: Keep Primary Primary Channels to Include: ALL Secondary Channels to Include: Oxygen:Dissolved, Flag:Oxygen:Dissolved Primary file : Q:\Cruise_Data\2004-21\ctd\hydro\2004-21-0085.mrg1 Secondary file: Q:\Cruise_Data\2004-21\ctd\hydro\2004-21-0085.add1 Comments from secondary file: Q:\Cruise_Data\2004-21\ctd\hydro\2004-21-0085.add1 -------------------------------------------------- C.H. Culbertson's paper on Dissolved Oxygen in the 'Woce Hydrographic Program Operations and Methods - July 1991' -The following OXYCALC parameters were used Blank = 0.002 Sodium Thiosulfate concentration = 0.725 Volume of iodate standard (cm**3) = 9.98 Enter Normalitity of iodate standard = 0.01013000 -HEADER EDITS: 2004/09/28 10:48:29 Channel 10: Flag:Oxygen:Dissolved [] Name ==> Flag:Oxygen:Dissolved -The following MERGE parameters were used: Merge Channel: Sample_Number Merge Scheme Used: Add Secondary to Primary Overlap Scheme Used: Keep Primary Primary Channels to Include: ALL Secondary Channels to Include: Chlorophyll:Extracted, Flag:Chlorophyll:Extracted Primary file : Q:\Cruise_Data\2004-21\ctd\hydro\2004-21-0085.mrg2 Secondary file: Q:\Cruise_Data\2004-21\ctd\hydro\2004-21-0085.chl -The following CALIB parameters were used: Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = Q:\Cruise_Data\2004-21\ctd\doc\2004-21-recal1.ccf Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 9 Oxygen:Dissolved:SBE mL/L 10 0.7000000E-01 0.1043700E+01 16 Salinity:T0:C0 PSS-78 10 0.1500000E-02 0.1000000E+01 17 Salinity:T1:C1 PSS-78 10 -0.3000000E-02 0.1000000E+01 -CLEAN functions: 2004/10/04 16:02:06 20 Remove Sea-Bird comments from the header. -The following SORT parameters were used. Sorted by channel: Pressure Pressure channel sorted according to values in sort channel -The following CHANNEL(S) were removed from file. Scan_Number Temperature:Secondary Conductivity:Primary Conductivity:Secondary Altimeter Status:Pump Descent_Rate Salinity:T1:C1 Flag -HEADER EDITS: 2004/10/04 16:05:40 Applied edit header: O:\Data Processing\Header Comments\sal_oxy_chl_frozen_nut_ Channel 2: Pressure [dbar] Units ==> dbar Format: F10.3 ==> F7.1 Channel 5: Oxygen:Dissolved:SBE [mL/L] Format: F8.3 ==> F7.2 Channel 6: Fluorescence:URU [mg/m^3] Name ==> Fluorescence:URU Channel 7: PAR [uE/m^2/sec] Format: F11.3 ==> F7.1 Channel 8: PAR:Reference [uE/m^2/sec] Format: F11.3 ==> F7.1 Channel 11: Number_of_bin_records [n/a] Format: F5.0 ==> I5 Channel 14: Chlorophyll:Extracted [mg/m^3] Units ==> mg/m^3 -SORT parameters: 2004/11/29 15:56:32 Sorted in descending order of channel Sample_Number -The following MERGE parameters were used: 2004/11/29 15:56:45 2004/11/29 15:56: Merge Channel: Sample_Number Merge Scheme Used: Interweave Records from Both Files Overlap Scheme Used: Keep Primary Primary Channels to Include: ALL Secondary Channels to Include: Nitrate_plus_Nitrite [umol/L], Flag:Nitrate_plus_Nitrite [ ], Silicate [umol/L], Flag:Silicate [ ], Phosphate [umol/L], Flag:Phosphate [ ] Primary file : H:\Data Processing\2004\2004-21\2004-21-0085.srt_che Secondary file: H:\Data Processing\2004\2004-21\2004-21-0085.nut -SORT parameters: 2004/11/29 15:59:36 Sorted in ascending order of channel Pressure $END *COMMENTS Comments from secondary file: Q:\Cruise_Data\2004-21\ctd\hydro\2004-21-0085.chl ------------------------------------------------- Average of two samples is reported. Variability is assessed as the % (std dev/mean*100). Analysis methods: ----------------- Salinity samples are collected in glass bottles and analyzed on Guildline model 8410 Portasal Salinometers which are standardized with IAPSO standard seawater. Oxygen samples are analyzed on an automated Winkler titration system following the procedures of Carpenter (1965). A Brinkmann model 665 Dosimat and model PC910 Colorimeter is controlled by Visual-Basic program to titrate the oxygen samples. Nutrient samples are analyzed frozen using a Technicon AAII autoanalyzer following methods described in Barwell-Clarke and Whitney (1996). Chlorophyll samples are collected in duplicate in calibrated polycarbonate bottles (~330ml), then filtered onto 25mm MFS GF/75 filters at <70mmHg vacuum. The filters are placed in glass scintillation vials and immediately frozen at -20ºC until analysis. The chlorophyll is extracted in 10 ml of 90% acetone for 24h at -20ºC, then brought to room temperature and the extract is decanted and measured using a Turner Designs 10-AU-005-CE fluorometer, which has been calibrated with solutions of commercially prepared chlorophyll. References: 1. Carpenter, J.H. 1965. The Chesapeake Bay Institute Technique for the Winkler Dissolved Oxygen Method. Limmnol. & Oceanogr., 10: 141-143. 2. J. Barwell-Clarke and F. Whitney. 1996. Institute of Ocean Sciences Nutrient Methods and Analysis. Canadian Technical Report of Hydrography and Ocean Sciences, No. 182, 43 pp. *CALIBRATION $TABLE: CORRECTED CHANNELS ! Name Units Fmla Pad Coefficients ! ---------------------- -------- ---- ------ ------------ Oxygen:Dissolved:SBE mL/L 10 -99 () (0.7E-01 1.0437) Salinity:T0:C0 PSS-78 10 -99 () (0.15E-02 1) Salinity:T1:C1 PSS-78 10 -99 () (-0.3E-02 1) $END !-1-- --2--- ---3---- --4-- --5--- ---6--- --7--- --8--- ---9---- 10 -11- ---12-- - --14-- - --16- - --18- - --20-- - !Samp Pressu Temperat Trans Oxygen Fluores PAR PAR: Salinity Bo Numb Oxygen: F Chloro F Nitra F Silic F Phosph F !le_ re ure: missi : cence: Refere :T0:C0 tt er_o Dissolv l phyll: l te_ l ate l ate l !Numb Primary vity Dissol URU nce ~u ~bin ed ~ Extrac ~ plus_ ~ ~ ~ !er ved: mb _rec e ted e Nitri t t t ! SBE er ords d d te e e e !---- ------ -------- ----- ------ ------- ------ ------ -------- -- ---- ------- - ------ - ----- - ----- - ------ - *END OF HEADER 276 1.9 17.4679 38.6 7.42 1.175 3.1 31.1 26.9999 16 121 7.530 0 1.55 0 0.0 0 11.6 0 0.33 0 275 6.1 15.6329 35.8 7.96 1.721 0.8 31.1 27.3410 15 121 7.745 0 5.09 0 3.3 0 21.3 0 0.66 0 274 11.1 11.6256 40.4 5.44 2.741 0.5 31.1 28.8365 14 121 5.295 0 4.60 0 18.0 0 41.5 0 1.69 0 273 21.3 10.7846 50.2 4.76 0.824 0.5 31.1 29.2061 13 121 4.816 0 1.51 0 22.0 0 47.1 0 1.92 0 272 31.0 10.6195 51.1 4.67 0.868 0.5 31.1 29.2696 12 121 4.745 0 1.16 0 22.8 0 47.9 0 2.02 0 271 41.4 10.4623 51.7 4.60 0.632 0.5 31.1 29.3550 11 121 4.851 0 0.93 0 23.4 0 48.6 0 2.03 0 270 51.1 10.1723 52.7 4.48 0.424 0.5 31.1 29.4856 10 121 4.491 0 -99.00 0 24.6 0 49.7 0 2.19 0 269 76.1 8.8387 55.9 3.87 0.178 0.5 31.1 29.9726 9 121 3.842 0 -99.00 0 30.0 0 55.0 0 2.47 0 268 100.9 8.7893 54.9 4.11 0.165 0.5 31.1 30.2752 8 121 4.133 0 -99.00 0 28.7 0 50.6 0 2.30 0 267 126.2 8.7212 54.8 4.02 0.166 0.5 31.1 30.3440 7 121 4.032 0 -99.00 0 27.6 0 50.8 0 2.42 0 266 150.9 8.7383 52.0 3.81 0.161 0.5 31.1 30.4402 6 121 3.805 0 -99.00 0 29.2 0 58.5 0 2.52 0 265 175.9 8.7672 52.2 3.74 0.162 0.5 31.1 30.4759 5 121 3.747 0 -99.00 0 29.3 0 60.9 0 2.50 0 264 201.1 8.8149 52.6 3.67 0.160 0.5 31.1 30.5190 4 121 3.656 0 -99.00 0 29.4 0 61.5 0 2.63 0 263 250.8 8.8975 51.7 3.46 0.161 0.5 31.1 30.5760 3 121 3.435 0 -99.00 0 29.6 0 65.5 0 2.72 0 262 301.2 8.9982 47.8 3.18 0.162 0.5 31.1 30.6225 2 121 3.197 0 -99.00 0 30.3 0 68.9 0 2.72 0 261 311.0 9.0126 46.4 3.13 0.164 0.5 31.1 30.6279 1 121 3.194 0 -99.00 0 30.3 0 70.9 0 2.74 0