*2018/07/06 08:59:18.69 *IOS HEADER VERSION 2.0 2016/04/28 2016/06/13 IVF16 *FILE START TIME : UTC 2004/06/24 09:06:50.000 TIME INCREMENT : 0 0 0 0.416667E-01 0 ! (day hr min sec ms) NUMBER OF RECORDS : 17 DATA DESCRIPTION : Bottle:Rosette:Up:Stop + CTD:Up FILE TYPE : ASCII NUMBER OF CHANNELS : 23 $TABLE: CHANNELS ! No Name Units Minimum Maximum !--- ---------------------------- --------------- -------------- -------------- 1 Sample_Number n/a 157 173 2 Pressure decibar 2.3 370.9 3 Temperature:Primary 'deg C (ITS90)' 9.0441 15.4855 4 Transmissivity %/metre 21.4 55.5 5 Oxygen:Dissolved:SBE mL/L 2.69 7.26 6 Fluorescence:URU mg/m^3 0.166 3.285 7 PAR uE/m^2/sec 0.5 2.4 8 PAR:Reference uE/m^2/sec 31.1 31.1 9 Salinity:T0:C0 PSS-78 22.2167 30.9862 10 Bottle_Number n/a 1 17 11 Number_of_bin_records n/a 121 121 12 Salinity:Bottle PSS-78 26.049 30.9836 13 Flag:Salinity:Bottle n/a 14 Oxygen:Dissolved mL/L 2.678 7.26 15 Flag:Oxygen:Dissolved n/a 16 Chlorophyll:Extracted mg/m^3 0.15 3.69 17 Flag:Chlorophyll:Extracted n/a 18 Nitrate_plus_Nitrite umol/L 0.7 29.9 19 Flag:Nitrate_plus_Nitrite n/a 20 Silicate umol/L 16.7 67.2 21 Flag:Silicate n/a 22 Phosphate umol/L 0.4 2.95 23 Flag:Phosphate n/a $END $TABLE: CHANNEL DETAIL ! No Pad Start Width Format Type Decimal_Places !--- ---- ----- ----- ------ ---- -------------- 1 -99 ' ' 5 I I 0 2 -99 ' ' 7 F ' ' 1 3 -99 ' ' 9 F ' ' 4 4 -99 ' ' 6 F ' ' 1 5 -99 ' ' 7 F ' ' 2 6 -99 ' ' 8 F ' ' 3 7 -99 ' ' 7 F ' ' 1 8 -99 ' ' 7 F ' ' 1 9 -99 ' ' 9 F ' ' 4 10 -99 ' ' 3 I I 0 11 -99 ' ' 5 I I 0 12 -99 ' ' 9 F R4 4 13 -99 ' ' 2 NQ C ' ' 14 -99 ' ' 8 F ' ' 3 15 -99 ' ' 2 NQ C ' ' 16 -99 ' ' 7 F R4 2 17 -99 ' ' 2 NQ C ' ' 18 -99 ' ' ' ' F6.1 R4 ' ' 19 -99 ' ' 2 NQ C ' ' 20 -99 ' ' ' ' F6.1 R4 ' ' 21 -99 ' ' 2 NQ C ' ' 22 -99 ' ' ' ' F7.2 R4 ' ' 23 -99 ' ' 2 NQ C ' ' $END $REMARKS Flag channels initialized with zeros. Non-zero values have the following significance: -------------------------------------------------------------------------------------- 1 = Sample for this measurement was drawn from water bottle but not analyzed (not normally used). 2 = Acceptable measurement (not normally used). 3 = Questionable measurement (no problem observed in sampling or analysis, but value is not trusted, nonetheless; includes outlyers). 4 = Bad measurement (known problem with sampling or analysis, but not serious enough to completely discard the value). 5 = Not reported (lost sample; unredeemably bad measurement). 6 = Mean of replicate measurements. 7 = Manual chromatographic peak measurement. 8 = Irregular digital chromatographic peak integration. 9 = Sample not drawn for this measurement from this bottle (not normally used). -------------------------------------------------------------------------------------- $END *ADMINISTRATION MISSION : 2004-21 AGENCY : IOS, Ocean Science and Productivity, Sidney, B.C. COUNTRY : Canada PROJECT : JdeF/SoG SCIENTIST : Masson D. PLATFORM : Vector *LOCATION GEOGRAPHIC AREA : Juan de Fuca Strait /Strait of Georgia STATION : 39 EVENT NUMBER : 55 LATITUDE : 49 9.87000 N ! (deg min) LONGITUDE : 123 33.02000 W ! (deg min) WATER DEPTH : 380 ALTIMETER (M) : 6.57 ! custom item $REMARKS Altimeter value is distance from bottom and is calculated as the median of the deepest 2 metres of data. $END *INSTRUMENT TYPE : Sea-Bird CTD MODEL : SBE-911plus SERIAL NUMBER : 0585 $TABLE: SENSORS ! Name Abs Depth Serial No ! ------------------------- -------------- ---------- temperature:primary ' ' 2023 conductivity:primary ' ' 1763 pressure ' ' 77511 temperature:secondary ' ' 2095 conductivity:secondary ' ' 1764 Fluorometer ' ' Seapoint Oxygen:SBE ' ' 0047 transmissometer:primary ' ' 498DR irradiance ' ' primary altimeter: ' ' ' ' surface ' ' 'degrees = 0.0' $END $REMARKS SOFTWARE VERSION SEASAVE WIN32 V 5.30A Comments from secondary file: Q:\Cruise_Data\2004-21\ctd\hydro\2004-21-0055.add ------------------------------------------------- Dissolved oxygen concentration determined using an automated titration system consisting of a Brinkman dosimat (model 665) and a PC 900 Colorimeter. $END *HISTORY $TABLE: PROGRAMS ! Name Vers Date Time Recs In Recs Out ! ------------------------ ------ ---------- -------- --------- --------- SBE_IOS 2.8 2004/09/27 12:53:43 2057 2057 CLEAN 4.7.1 2004/09/27 12:54:24 ? ? ADDSAMP 3.4 2004/09/27 16:33:13 2057 2057 BINAVE 4.0.1 2004/09/27 16:38:29 2057 17 MERGE 3.1 2004/09/27 17:38:37 17 17 MERGE 3.1 2004/09/28 10:34:16 17 17 MERGE 3.1 2004/10/01 16:15:59 17 17 CALIB 11.4 2004/10/01 17:10:42 17 17 CLEAN 4.7.1 2004/10/04 16:02:07 ? ? SORT 3.4.1 2004/10/04 16:02:14 17 17 REMOVECH 6.0 2004/10/04 16:02:42 17 17 HDREDIT2 2.3 2004/10/04 16:05:40 ? ? SORT 3.5 2004/11/29 15:56:31 17 17 MERGE 3.3 2004/11/29 15:56:46 17 17 SORT 3.5 2004/11/29 15:59:35 17 17 CHANGE_FLAGS 1.0 2013/07/29 14:29:48 17 17 CHANGE_CTD_CHANNEL_NAMES 1.0 2013/12/16 15:31:02 17 17 CHANGE_FLAGS 2.0 2014/11/20 09:54:26 17 17 CLEAN 5.2.3 2018/07/06 08:59:18 ? ? $END $REMARKS -CLEAN functions: 2004/09/27 12:54:01 20 Set event to last 4 characters of file name -The following ADDSAMP parameters were used: Sample Number Lookup File: Q:\Cruise_Data\2004-21\ctd\hydro\addsamp.csv Bottle Channel Name: Bottle_Number -The following BINAVE parameters were used: Bin channel = Bottle_Number Averaging interval = 1.00 Minimum bin value = 0.000 Average value was used Interpolated values were NOT used for empty bins Channel 'NUMBER_OF_BIN_RECORDS' was added to file. -The following MERGE parameters were used: Merge Channel: Sample_Number Merge Scheme Used: Add Secondary to Primary Overlap Scheme Used: Keep Primary Primary Channels to Include: ALL Secondary Channels to Include: Salinity:Bottle, Flag:Salinity:Bottle Primary file : Q:\Cruise_Data\2004-21\CTD\hydro\2004-21-0055.samavg Secondary file: Q:\Cruise_Data\2004-21\CTD\hydro\2004-21-0055.sal -The following MERGE parameters were used: Merge Channel: Sample_Number Merge Scheme Used: Add Secondary to Primary Overlap Scheme Used: Keep Primary Primary Channels to Include: ALL Secondary Channels to Include: Oxygen:Dissolved, Flag:Oxygen:Dissolved Primary file : Q:\Cruise_Data\2004-21\ctd\hydro\2004-21-0055.mrg1 Secondary file: Q:\Cruise_Data\2004-21\ctd\hydro\2004-21-0055.add Comments from secondary file: Q:\Cruise_Data\2004-21\ctd\hydro\2004-21-0055.add ------------------------------------------------- C.H. Culbertson's paper on Dissolved Oxygen in the 'Woce Hydrographic Program Operations and Methods - July 1991' -The following MERGE parameters were used: Merge Channel: Sample_Number Merge Scheme Used: Add Secondary to Primary Overlap Scheme Used: Keep Primary Primary Channels to Include: ALL Secondary Channels to Include: Chlorophyll:Extracted, Flag:Chlorophyll:Extracted Primary file : Q:\Cruise_Data\2004-21\ctd\hydro\2004-21-0055.mrg2 Secondary file: Q:\Cruise_Data\2004-21\ctd\hydro\2004-21-0055.chl -The following CALIB parameters were used: Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = Q:\Cruise_Data\2004-21\ctd\doc\2004-21-recal1.ccf Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 9 Oxygen:Dissolved:SBE mL/L 10 0.7000000E-01 0.1043700E+01 16 Salinity:T0:C0 PSS-78 10 0.1500000E-02 0.1000000E+01 17 Salinity:T1:C1 PSS-78 10 -0.3000000E-02 0.1000000E+01 -CLEAN functions: 2004/10/04 16:02:06 20 Remove Sea-Bird comments from the header. -The following SORT parameters were used. Sorted by channel: Pressure Pressure channel sorted according to values in sort channel -The following CHANNEL(S) were removed from file. Scan_Number Temperature:Secondary Conductivity:Primary Conductivity:Secondary Altimeter Status:Pump Descent_Rate Salinity:T1:C1 Flag -HEADER EDITS: 2004/10/04 16:05:40 Applied edit header: O:\Data Processing\Header Comments\sal_oxy_chl_frozen_nut_ Channel 2: Pressure [dbar] Units ==> dbar Format: F10.3 ==> F7.1 Channel 5: Oxygen:Dissolved:SBE [mL/L] Format: F8.3 ==> F7.2 Channel 6: Fluorescence:URU [mg/m^3] Name ==> Fluorescence:URU Channel 7: PAR [uE/m^2/sec] Format: F11.3 ==> F7.1 Channel 8: PAR:Reference [uE/m^2/sec] Format: F11.3 ==> F7.1 Channel 11: Number_of_bin_records [n/a] Format: F5.0 ==> I5 Channel 12: Salinity:Bottle [PSS-78] Units ==> PSS-78 Channel 16: Chlorophyll:Extracted [mg/m^3] Units ==> mg/m^3 -SORT parameters: 2004/11/29 15:56:31 Sorted in descending order of channel Sample_Number -The following MERGE parameters were used: 2004/11/29 15:56:45 2004/11/29 15:56: Merge Channel: Sample_Number Merge Scheme Used: Interweave Records from Both Files Overlap Scheme Used: Keep Primary Primary Channels to Include: ALL Secondary Channels to Include: Nitrate_plus_Nitrite [umol/L], Flag:Nitrate_plus_Nitrite [ ], Silicate [umol/L], Flag:Silicate [ ], Phosphate [umol/L], Flag:Phosphate [ ] Primary file : H:\Data Processing\2004\2004-21\2004-21-0055.srt_che Secondary file: H:\Data Processing\2004\2004-21\2004-21-0055.nut -SORT parameters: 2004/11/29 15:59:35 Sorted in ascending order of channel Pressure -CLEAN functions: 2018/07/06 08:59:17 20 Change Pad Value to -99 in All Channels. $END *COMMENTS Comments from secondary file: Q:\Cruise_Data\2004-21\ctd\hydro\2004-21-0055.chl ------------------------------------------------- Average of two samples is reported. Variability is assessed as the % (std dev/mean*100). Analysis methods: ----------------- Salinity samples are collected in glass bottles and analyzed on Guildline model 8410 Portasal Salinometers which are standardized with IAPSO standard seawater. Oxygen samples are analyzed on an automated Winkler titration system following the procedures of Carpenter (1965). A Brinkmann model 665 Dosimat and model PC910 Colorimeter is controlled by Visual-Basic program to titrate the oxygen samples. Nutrient samples are analyzed frozen using a Technicon AAII autoanalyzer following methods described in Barwell-Clarke and Whitney (1996). Chlorophyll samples are collected in duplicate in calibrated polycarbonate bottles (~330ml), then filtered onto 25mm MFS GF/75 filters at <70mmHg vacuum. The filters are placed in glass scintillation vials and immediately frozen at -20ºC until analysis. The chlorophyll is extracted in 10 ml of 90% acetone for 24h at -20ºC, then brought to room temperature and the extract is decanted and measured using a Turner Designs 10-AU-005-CE fluorometer, which has been calibrated with solutions of commercially prepared chlorophyll. References: 1. Carpenter, J.H. 1965. The Chesapeake Bay Institute Technique for the Winkler Dissolved Oxygen Method. Limmnol. & Oceanogr., 10: 141-143. 2. J. Barwell-Clarke and F. Whitney. 1996. Institute of Ocean Sciences Nutrient Methods and Analysis. Canadian Technical Report of Hydrography and Ocean Sciences, No. 182, 43 pp. *CALIBRATION $TABLE: CORRECTED CHANNELS ! Name Units Fmla Pad Coefficients ! ---------------------- -------- ---- ------ ------------ Oxygen:Dissolved:SBE mL/L 10 -99 () (0.7E-01 1.0437) Salinity:T0:C0 PSS-78 10 -99 () (0.15E-02 1) Salinity:T1:C1 PSS-78 10 -99 () (-0.3E-02 1) $END !-1-- --2--- ---3---- --4-- --5--- ---6--- --7--- --8--- ---9---- 10 -11- ---12--- - ---14-- - --16-- - --18- - --20- - --22-- - !Samp Pressu Temperat Trans Oxygen Fluores PAR PAR: Salinity Bo Numb Salinity F Oxygen: F Chloro F Nitra F Silic F Phosph F !le_ re ure: missi : cence: Refere :T0:C0 tt er_o :Bottle l Dissolv l phyll: l te_ l ate l ate l !Numb Primary vity Dissol URU nce ~u ~bin ~ ed ~ Extrac ~ plus_ ~ ~ ~ !er ved: mb _rec l e ted e Nitri t t t ! SBE er ords e d d te e e e !---- ------ -------- ----- ------ ------- ------ ------ -------- -- ---- -------- - ------- - ------ - ----- - ----- - ------ - *END OF HEADER 173 2.3 15.4855 21.4 6.81 2.647 2.4 31.1 22.2167 17 121 -99.0000 0 6.978 0 3.21 0 1.0 0 24.4 0 0.40 0 172 6.4 14.8752 37.0 7.26 1.820 0.7 31.1 26.0891 16 121 26.0490 0 7.260 0 2.53 0 0.7 0 16.7 0 0.51 0 171 11.1 13.3083 32.0 6.95 3.285 0.5 31.1 27.6010 15 121 -99.0000 0 6.656 0 3.69 0 4.2 0 19.2 0 0.89 0 170 21.3 10.6085 47.8 4.38 1.410 0.5 31.1 29.1559 14 121 -99.0000 0 4.393 0 1.62 0 20.5 0 39.5 0 2.02 0 169 31.4 9.8850 54.3 4.09 0.325 0.5 31.1 29.5090 13 121 -99.0000 0 4.126 0 0.41 0 25.3 0 47.5 0 2.11 0 168 41.0 9.4479 55.5 4.00 0.232 0.5 31.1 29.6661 12 121 -99.0000 0 4.012 0 0.15 0 27.4 0 50.7 0 2.48 0 167 51.0 9.1517 52.5 4.09 0.209 0.5 31.1 29.8142 11 121 -99.0000 0 4.185 0 -99.00 0 26.8 0 44.0 0 2.38 0 166 75.9 9.2506 53.6 4.21 0.192 0.5 31.1 30.0072 10 121 -99.0000 0 4.234 0 -99.00 0 26.9 0 43.4 0 2.20 0 165 101.1 9.0441 53.9 4.29 0.170 0.5 31.1 30.2437 9 121 -99.0000 0 4.318 0 -99.00 0 26.8 0 42.4 0 2.26 0 164 126.2 9.1664 54.0 4.26 0.166 0.5 31.1 30.4818 8 121 -99.0000 0 4.277 0 -99.00 0 25.8 0 42.6 0 1.96 0 163 150.9 9.2046 54.0 4.18 0.169 0.5 31.1 30.5803 7 121 -99.0000 0 4.175 0 -99.00 0 25.5 0 42.8 0 2.21 0 162 175.8 9.2171 53.5 3.98 0.166 0.5 31.1 30.7110 6 121 -99.0000 0 3.955 0 -99.00 0 26.3 0 46.5 0 2.18 0 161 201.1 9.2164 50.6 3.49 0.175 0.5 31.1 30.7967 5 121 -99.0000 0 3.480 0 -99.00 0 27.7 0 53.9 0 2.47 0 160 253.2 9.2425 47.8 3.24 0.179 0.5 31.1 30.8655 4 121 -99.0000 0 3.240 0 -99.00 0 28.6 0 59.1 0 2.61 0 159 300.4 9.3299 52.1 2.69 0.170 0.5 31.1 30.9336 3 121 -99.0000 0 2.678 0 -99.00 0 29.9 0 67.2 0 2.85 0 158 351.2 9.3208 50.7 2.83 0.166 0.5 31.1 30.9637 2 121 30.9649 0 2.871 0 -99.00 0 22.5 0 49.3 0 2.84 0 157 370.9 9.3153 38.2 2.78 0.177 0.5 31.1 30.9862 1 121 30.9836 0 2.846 0 -99.00 0 26.7 0 63.0 0 2.95 0