*2014/11/20 09:54:18.24 *IOS HEADER VERSION 1.10 2011/10/26 2011/10/26 *FILE START TIME : UTC 2004/06/07 23:07:53.000 TIME INCREMENT : 0 0 0 0.416667E-01 0 ! (day hr min sec ms) NUMBER OF RECORDS : 19 DATA DESCRIPTION : Bottle:Rosette:Up:Stop + CTD:Up FILE TYPE : ASCII NUMBER OF CHANNELS : 22 $TABLE: CHANNELS ! No Name Units Minimum Maximum !--- ---------------------------- --------------- -------------- -------------- 1 Sample_Number n/a 225 243 2 Pressure decibar 2.3 200.3 3 Temperature:Primary 'deg C (ITS90)' 4.2563 8.4451 4 Transmissivity %/metre 53.3 61.7 5 Oxygen:Dissolved:SBE mL/L 2.18 7.26 6 PAR uE/m^2/sec 0.5 454.3 7 Fluorescence:URU:Seapoint mg/m^3 0.136 1.238 8 Bottle_Number n/a 1 19 9 Salinity:T0:C0 PSS-78 32.6553 33.7863 10 Number_of_bin_records n/a 62 121 11 Nitrate_plus_Nitrite umol/L 14.6 37 12 Flag:Nitrate_plus_Nitrite n/a 13 Silicate umol/L 25.4 76.1 14 Flag:Silicate n/a 15 Phosphate umol/L 1.27 2.73 16 Flag:Phosphate n/a 17 Chlorophyll:Extracted mg/m^3 0.23 0.39 18 Flag:Chlorophyll:Extracted n/a 19 Oxygen:Dissolved mL/L 2.585 7.299 20 Flag:Oxygen:Dissolved n/a 21 Dimethyl_Sulphide nmol/L 0 1.74 22 Flag:Dimethyl_Sulphide n/a $END $TABLE: CHANNEL DETAIL ! No Pad Start Width Format Type Decimal_Places !--- ---- ----- ----- ------ ---- -------------- 1 -99 ' ' 5 I I 0 2 -99 ' ' 7 F ' ' 1 3 -99 ' ' 9 F ' ' 4 4 -99 ' ' 6 F ' ' 1 5 -99 ' ' 7 F ' ' 2 6 -99 ' ' 7 F ' ' 1 7 -99 ' ' 8 F ' ' 3 8 -99 ' ' 3 I I 0 9 -99 ' ' 9 F ' ' 4 10 ' ' ' ' 5 I I 0 11 -99 ' ' ' ' F6.1 R4 ' ' 12 0 ' ' 2 NQ C ' ' 13 -99 ' ' ' ' F6.1 R4 ' ' 14 0 ' ' 2 NQ C ' ' 15 -99 ' ' ' ' F7.2 R4 ' ' 16 0 ' ' 2 NQ C ' ' 17 -99 ' ' ' ' F7.2 R4 ' ' 18 0 ' ' 2 NQ C ' ' 19 -99 ' ' 8 F ' ' 3 20 0 ' ' 2 NQ C ' ' 21 -99 ' ' ' ' F7.2 R4 ' ' 22 0 ' ' 2 NQ C ' ' $END $REMARKS Flag channels initialized with zeros. Non-zero values have the following significance: -------------------------------------------------------------------------------------- 1 = Sample for this measurement was drawn from water bottle but not analyzed (not normally used). 2 = Acceptable measurement (not normally used). 3 = Questionable measurement (no problem observed in sampling or analysis, but value is not trusted, nonetheless; includes outlyers). 4 = Bad measurement (known problem with sampling or analysis, but not serious enough to completely discard the value). 5 = Not reported (lost sample; unredeemably bad measurement). 6 = Mean of replicate measurements. 7 = Manual chromatographic peak measurement. 8 = Irregular digital chromatographic peak integration. 9 = Sample not drawn for this measurement from this bottle (not normally used). -------------------------------------------------------------------------------------- Comments from secondary file: H:\Data Processing\Oxygen redo\2004-10\2004-10-0040.clnadd -------------------------------------------------------------------------------------- Raw data in file oxydata\2004-10-\2004-10-0040.o2 VIO3 = 9.98 ! Volume of iodate standard (cm**) NIO3 = .01013 ! Normality of iodate standard VREG = 2.0 ! Volume of sample displaced by reagents (cm**3) DOREG = 0.0017 ! Absolute amount of O2 added with reagents (ml) $END *ADMINISTRATION MISSION : 2004-10 AGENCY : IOS, Ocean Science and Productivity, Sidney, B.C. COUNTRY : Canada PROJECT : Line P SCIENTIST : Robert M. PLATFORM : John P. Tully *LOCATION GEOGRAPHIC AREA : N.E. Pacific STATION : P26 EVENT NUMBER : 40 LATITUDE : 50 0.61000 N ! (deg min) LONGITUDE : 144 58.64000 W ! (deg min) WATER DEPTH : 4000 *INSTRUMENT TYPE : Sea-Bird CTD MODEL : SBE-911plus SERIAL NUMBER : 0585 $TABLE: SENSORS ! Name Abs Depth Serial No ! ------------------------- -------------- ---------- temperature:primary ' ' 2023 conductivity:primary ' ' 1763 pressure ' ' 77511 temperature:secondary ' ' 2095 conductivity:secondary ' ' 1764 Fluorometer ' ' Seapoint Oxygen:SBE ' ' 0047 transmissometer:primary ' ' 498DR irradiance ' ' primary altimeter: ' ' ' ' $END $REMARKS SOFTWARE VERSION SEASAVE WIN32 V 5.30A Comments from secondary file: Q:\Cruise_Data\2004-10\CTD files\hydro\2004-10-0040.add ------------------------------------------------------- Dissolved oxygen concentration determined using an automated titration system consisting of a Brinkman dosimat (model 665) and a PC 900 Colorimeter. $END *HISTORY $TABLE: PROGRAMS ! Name Vers Date Time Recs In Recs Out ! ------------------------ ------ ---------- -------- --------- --------- SBE_IOS 2.7 2004/08/02 13:51:13 2170 2170 CLEAN 4.7 2004/08/02 13:52:43 ? ? ADDSAMP 3.4 2004/08/04 17:32:23 2170 2170 BINAVE 4.0.1 2004/08/04 17:34:23 2170 19 MERGE 3.1 2004/08/05 08:47:52 19 19 MERGE 3.1 2004/08/05 08:56:20 19 19 CALIB 11.4 2004/08/13 14:37:15 19 19 CLEAN 4.7 2004/08/17 12:47:05 ? ? SORT 3.4.1 2004/08/17 12:49:26 19 19 REMOVECH 6.0 2004/08/17 12:53:54 19 19 HDREDIT2 2.2 2004/08/17 13:01:52 ? ? CALIB 11.4 2004/09/29 14:45:43 19 19 SORT 3.5 2004/11/03 15:51:06 19 19 MERGE 3.3 2004/11/03 15:51:51 19 19 SORT 3.5 2004/11/03 16:00:23 19 19 HDREDIT2 2.3 2004/12/07 14:38:25 ? ? REMOVECH 7.0 2005/09/19 16:20:41 19 19 SORT 3.5 2005/09/19 16:21:42 19 19 MERGE 3.3 2005/09/19 16:22:50 19 19 SORT 3.5 2005/09/19 16:34:27 19 19 CALIB 11.6 2005/10/12 13:52:17 19 19 HDREDIT2 2.5 2005/11/04 10:58:00 ? ? CHANGE_FLAGS 1.0 2013/07/16 11:47:42 19 19 SORT 3.6 2013/10/28 15:59:38 19 19 MERGE 3.5 2013/10/28 16:00:00 19 19 SORT 3.6 2013/10/28 16:02:19 19 19 HDREDIT2 2.6 2013/10/28 16:02:30 ? ? CHANGE_CTD_CHANNEL_NAMES 1.0 2013/12/16 15:30:15 19 19 CHANGE_FLAGS 2.0 2014/11/20 09:54:18 19 19 $END $REMARKS -CLEAN functions: Set event to last 4 characters of file name -The following ADDSAMP parameters were used: Sample Number Lookup File: Q:\Cruise_Data\2004-10\CTD files\hydro\addsamp.csv Bottle Channel Name: Bottle_Number -The following BINAVE parameters were used: Bin channel = Bottle_Number Averaging interval = 1.00 Minimum bin value = 0.000 Average value was used Interpolated values were NOT used for empty bins Channel 'NUMBER_OF_BIN_RECORDS' was added to file. -MERGE *** Secondary file not found *** Primary file : Q:\Cruise_Data\2004-10\CTD files\hydro\2004-10-0040.samavg Secondary file: Q:\Cruise_Data\2004-10\CTD files\hydro\2004-10-0040.sal -The following MERGE parameters were used: Merge Channel: Sample_Number Merge Scheme Used: Add Secondary to Primary Overlap Scheme Used: Keep Primary Primary Channels to Include: ALL Secondary Channels to Include: Oxygen:Dissolved, Flag:Oxygen:Dissolved Primary file : Q:\Cruise_Data\2004-10\CTD files\hydro\2004-10-0040.mrg1 Secondary file: Q:\Cruise_Data\2004-10\CTD files\hydro\2004-10-0040.add Comments from secondary file: Q:\Cruise_Data\2004-10\CTD files\hydro\2004-10-0040.add ------------------------------------------------------- C.H. Culbertson's paper on Dissolved Oxygen in the 'Woce Hydrographic Program Operations and Methods - July 1991' -The following OXYCALC parameters were used Blank = 0.002 Sodium Thiosulfate concentration = 0.715 Volume of iodate standard (cm**3) = 9.98 Enter Normalitity of iodate standard = 0.01013000 -The following CALIB parameters were used: Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = Q:\Cruise_Data\2004-10\CTD files\doc\2004-10-recal1.ccf Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 9 Oxygen:Dissolved:SBE mL/L 10 0.3310000E-01 0.1077200E+01 17 Salinity:T0:C0 PSS-78 10 0.1000000E-02 0.1000000E+01 -CLEAN functions: Remove Sea-Bird comments from the header. -The following SORT parameters were used. Sorted by channel: Pressure Pressure channel sorted according to values in sort channel -The following CHANNEL(S) were removed from file. Scan_Number Temperature:Secondary Conductivity:Primary Conductivity:Secondary Oxygen:Voltage:SBE Status:Pump Altimeter Descent_Rate Salinity:T1:C1 Flag -HEADER EDITS: Applied edit header: O:\Data Processing\Header Comments\sal_oxy_chl_fresh_nut_a Channel 1: Sample_Number [n/a] Pad: -9 ==> -99 Channel 2: Pressure [decibar] Units ==> dbars Format: F10.3 ==> F7.1 Channel 3: Temperature:Primary [deg C (ITS90)] (no changes) Channel 4: Transmissivity [%/metre] (no changes) Channel 5: Oxygen:Dissolved:SBE [mL/L] Format: F8.3 ==> F7.2 Channel 6: PAR [uE/m^2/sec] Format: F11.3 ==> F7.1 Channel 7: Fluorescence:URU:Seapoint [mg/m^3] (no changes) Channel 8: Bottle_Number [n/a] (no changes) Channel 9: Salinity:T0:C0 [PSS-78] (no changes) Channel 10: Number_of_bin_records [n/a] Format: F5.0 ==> I5 Channel 11: Oxygen:Dissolved [mL/L] (no changes) Channel 12: Flag:Oxygen:Dissolved [] Units ==> n/a Pad: 0 ==> blank -The following CALIB parameters were used: Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = Q:\Cruise_Data\2004-10\DOC new\2004-10-recal3.ccf Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 9 Salinity:T0:C0 PSS-78 10 0.5000000E-03 0.1000000E+01 -SORT parameters: 2004/11/03 15:51:06 Sorted in descending order of channel Sample_Number -The following MERGE parameters were used: 2004/11/03 15:51:50 2004/11/03 15:51: Merge Channel: Sample_Number Merge Scheme Used: Interweave Records from Both Files Overlap Scheme Used: Keep Primary Primary Channels to Include: ALL Secondary Channels to Include: Nitrate_plus_Nitrite, Flag:Nitrate_plus_Nitrite, Silicate, Flag:Silicate, Phosphate, Flag:Phosphate, Chlorophyll:Extracted, Flag:Chlorophyll:Extracted Primary file : H:\Data Processing\2004\2004-10\2004-10-0040.srt_che Secondary file: H:\Data Processing\2004\2004-10\2004-10-0040.mrg Comments from secondary file: H:\Data Processing\2004\2004-10\2004-10-0040.mrg ------------------------------------------------ -The following MERGE parameters were used: 2004/11/03 14:59:15 2004/11/03 14:59: Merge Channel: Sample_Number Merge Scheme Used: Interweave Records from Both Files Overlap Scheme Used: Keep Primary Primary Channels to Include: ALL Secondary Channels to Include: Chlorophyll:Extracted, Flag:Chlorophyll:Extracted Primary file : H:\Data Processing\2004\2004-10\2004-10-0040.nut Secondary file: H:\Data Processing\2004\2004-10\2004-10-0040.chl -SORT parameters: 2004/11/03 16:00:23 Sorted in ascending order of channel Pressure -HEADER EDITS: 2004/12/07 14:38:25 Applied edit header: H:\STNPCHEM\Work\HEADERS\Geographic Area.txt -REMOVECH 2005/09/19 16:20:41 The following CHANNEL(S) were removed: Oxygen:Dissolved [mL/L] Flag:Oxygen:Dissolved -SORT parameters: 2005/09/19 16:21:42 Sorted in ascending order of channel Sample_Number -The following MERGE parameters were used: 2005/09/19 16:22:49 2005/09/19 16:22:50 2005/09/19 16:22: Merge Channel: Sample_Number Merge Scheme Used: Interweave Records from Both Files Overlap Scheme Used: Keep Primary Primary Channels to Include: ALL Secondary Channels to Include: Oxygen:Dissolved, Flag:Oxygen:Dissolved Primary file : H:\Data Processing\Oxygen redo\2004-10\2004-10-0040.srtrem Secondary file: H:\Data Processing\Oxygen redo\2004-10\2004-10-0040.clnadd Comments from secondary file: H:\Data Processing\Oxygen redo\2004-10\2004-10-0040.clnadd ---------------------------------------------------------- C.H. Culbertson's paper on Dissolved Oxygen in the 'Woce Hydrographic Program Operations and Methods - July 1991' -The following OXYCALC parameters were used Blank = 0.002 Sodium Thiosulfate concentration = 0.715 Volume of iodate standard (cm**3) = 9.98 Enter Normalitity of iodate standard = 0.01013000 -CLEAN functions: 2005/09/19 16:22:17 20 -SORT parameters: 2005/09/19 16:34:27 -CALIB parameters: 2005/10/12 13:52:17 -HEADER EDITS: 2005/11/04 10:58:00 -SORT parameters: 2013/10/28 15:59:38 Sorted in ascending order of channel Sample_Number -The following MERGE parameters were used: 2013/10/28 16:00:00 Merge Channel: Sample_Number Merge Scheme Used: Add Secondary to Primary Overlap Scheme Used: Keep Secondary Primary Channels to Include: ALL Secondary Channels to Include: Dimethyl_Sulphide, Flag:Dimethyl_Sulphide Primary file : P:\John Pages Archive\2004-10\DMS\2004-10-0040.srt_che Secondary file: P:\John Pages Archive\2004-10\DMS\2004-10-0040.ios -SORT parameters: 2013/10/28 16:02:19 Sorted in ascending order of channel Pressure -HEADER EDITS: 2013/10/28 16:02:30 Applied edit header: P:\John Pages Archive\DMS_Methods post 1999.txt $END *COMMENTS Comments from secondary file: Q:\Cruise_Data\2004-10\CTD files\hydro\2004-10-0040.add ------------------------------------------------------- Sampel #227: Oxygen flag d assigned by analyst with note: colourimeter problem may have affected this value. Sample #227 was later found to be an outlier in comparison with CTD so flag was changed from "d" to "e" and the original value, 3.620 ml/l, was replaced with the pad value. Analysis methods: ----------------- Salinity samples are collected in glass bottles and analyzed on Guildline model 8410 Portasal Salinometers which are standardized with IAPSO standard seawater. Oxygen samples are analyzed on an automated Winkler titration system following the procedures of Carpenter (1965). A Brinkmann model 665 Dosimat and model PC910 Colorimeter is controlled by Visual-Basic program to titrate the oxygen samples. Nutrient samples are analyzed fresh on board using a Technicon AAII auto- analyzer following methods described in Barwell-Clarke and Whitney (1996). Chlorophyll samples are collected in duplicate in calibrated polycarbonate bottles (~330ml), then filtered onto 25mm MFS GF/75 filters at <70mmHg vacuum. The filters are placed in glass scintillation vials and immediately frozen at -20ºC until analysis. The chlorophyll is extracted in 10 ml of 90% acetone for 24h at -20ºC, then brought to room temperature and the extract is decanted and measured using a Turner Designs 10-AU-005-CE fluorometer, which has been calibrated with solutions of commercially prepared chlorophyll. For DMS methods see file "Method post 1999 for Dimethylsulfide Analysis.docx" in directory \\OSD_Data_Archive\Cruise_Data\Documents\Analysis Reference Papers\. The minimum detectable level for DMS is 0.10 nM, so “0” values should be interpreted as <0.10. . References: 1. Carpenter, J.H. 1965. The Chesapeake Bay Institute Technique for the Winkler Dissolved Oxygen Method. Limmnol. & Oceanogr., 10: 141-143. 2. J. Barwell-Clarke and F. Whitney. 1996. Institute of Ocean Sciences Nutrient Methods and Analysis. Canadian Technical Report of Hydrography and Ocean Sciences, No. 182, 43 pp. Comments from secondary file: H:\Data Processing\2004\2004-10\2004-10-0040.mrg ------------------------------------------------ Comments from secondary file: H:\Data Processing\2004\2004-10\2004-10-0040.chl ------------------------------------------------ Sample_Number 238: particles in chl sample Comments from secondary file: H:\Data Processing\Oxygen redo\2004-10\2004-10-0040.clnadd ---------------------------------------------------------- *CALIBRATION $TABLE: CORRECTED CHANNELS ! Name Units Fmla Pad Coefficients ! ---------------------- -------- ---- ------ ------------ Oxygen:Dissolved:SBE mL/L 10 -99 () (0.331E-01 1.0772) Salinity:T0:C0 PSS-78 10 -99 () (0.1E-02 1) Salinity:T0:C0 PSS-78 10 -99 () (0.5E-03 1) Oxygen:Dissolved:SBE mL/L 10 -99 () (0 1.005) $END !-1-- --2--- ---3---- --4-- --5--- --6--- ---7--- 8- ---9---- -10- --11- - --13- - --15-- - --17-- - ---19-- - --21-- - !Samp Pressu Temperat Trans Oxygen PAR Fluores Bo Salinity Numb Nitra F Silic F Phosph F Chloro F Oxygen: F Dimeth F !le_ re ure: missi : cence: tt :T0:C0 er_o te_ l ate l ate l phyll: l Dissolv l yl_ l !Numb Primary vity Dissol URU: ~u ~bin plus_ ~ ~ ~ Extrac ~ ed ~ Sulphi ~ !er ved: Seapoin mb _rec Nitri t t t ted e e de d ! SBE t er ords te e e e d d e !---- ------ -------- ----- ------ ------ ------- -- -------- ---- ----- - ----- - ------ - ------ - ------- - ------ - *END OF HEADER 243 2.3 8.4451 53.3 6.98 454.3 0.193 19 32.6556 120 14.6 0 25.4 0 1.27 0 0.23 0 6.943 0 1.29 0 242 6.2 8.4360 55.0 6.98 223.4 0.198 18 32.6559 121 14.6 0 25.5 0 1.29 0 0.24 0 6.939 0 1.22 0 241 10.8 8.2769 56.0 6.98 155.6 0.279 17 32.6553 121 14.6 0 25.4 0 1.29 0 0.24 0 6.970 0 1.45 0 240 15.1 8.2073 55.8 6.99 124.4 0.345 16 32.6562 121 14.6 0 25.5 0 1.30 0 0.26 0 6.953 0 1.47 0 239 20.4 8.1394 55.7 6.99 85.5 0.450 15 32.6567 121 14.6 0 25.9 0 1.30 0 0.28 0 7.045 0 1.57 6 238 26.0 7.9662 55.8 7.00 63.5 0.563 14 32.6594 121 14.6 0 25.9 0 1.31 0 0.28 0 6.987 0 1.74 0 237 30.3 7.9414 55.5 7.00 50.4 0.684 13 32.6600 121 -99.0 0 -99.0 0 -99.00 0 -99.00 0 -99.000 0 -99.00 0 234 30.4 7.9421 55.5 7.00 48.4 0.644 10 32.6599 118 -99.0 0 -99.0 0 -99.00 0 -99.00 0 -99.000 0 -99.00 0 231 30.5 7.9424 55.5 7.00 47.0 0.656 7 32.6598 94 14.7 0 25.9 0 1.33 0 0.32 0 7.016 0 1.50 0 236 30.5 7.9413 55.5 7.00 49.3 0.651 12 32.6600 120 -99.0 0 -99.0 0 -99.00 0 -99.00 0 -99.000 0 -99.00 0 233 30.6 7.9413 55.5 7.00 47.6 0.649 9 32.6599 81 -99.0 0 -99.0 0 -99.00 0 -99.00 0 -99.000 0 -99.00 0 235 30.6 7.9419 55.5 7.00 48.9 0.686 11 32.6600 120 -99.0 0 -99.0 0 -99.00 0 -99.00 0 -99.000 0 -99.00 0 232 30.7 7.9414 55.6 7.00 47.1 0.632 8 32.6597 62 -99.0 0 -99.0 0 -99.00 0 -99.00 0 -99.000 0 -99.00 0 230 40.1 7.4909 55.0 7.10 25.5 0.970 6 32.6834 121 15.1 0 26.7 0 1.36 0 0.38 0 7.042 0 1.18 0 229 51.9 6.4011 55.8 7.26 13.6 1.238 5 32.7384 121 16.0 0 28.4 0 1.43 0 0.39 0 7.299 0 0.81 0 228 75.1 5.7758 58.9 7.17 3.0 0.974 4 32.7835 121 17.5 0 31.0 0 1.53 0 0.38 0 7.188 0 -99.00 0 227 100.7 5.2095 60.3 7.01 1.1 0.566 3 32.8241 121 18.0 0 32.5 0 1.61 0 0.23 0 -99.000 5 0.63 0 226 176.0 4.4309 61.6 2.66 0.6 0.136 2 33.7485 120 36.0 0 69.7 0 2.57 0 -99.00 0 2.720 0 0.00 0 225 200.3 4.2563 61.7 2.18 0.5 0.142 1 33.7863 120 37.0 0 76.1 0 2.73 0 -99.00 0 2.585 0 0.00 0