*2014/11/20 09:54:17.65 *IOS HEADER VERSION 1.10 2011/10/26 2011/10/26 *FILE START TIME : UTC 2004/06/04 02:02:45.000 TIME INCREMENT : 0 0 0 0.416667E-01 0 ! (day hr min sec ms) NUMBER OF RECORDS : 23 DATA DESCRIPTION : Bottle:Rosette:Up:Stop + CTD:Up FILE TYPE : ASCII NUMBER OF CHANNELS : 23 $TABLE: CHANNELS ! No Name Units Minimum Maximum !--- --------------------------------- --------------- -------------- -------------- 1 Sample_Number n/a 90 112 2 Pressure decibar 5.8 3280.7 3 Temperature:Primary 'deg C (ITS90)' 1.6531 12.3781 4 Transmissivity %/metre 45.9 62 5 Oxygen:Dissolved:SBE mL/L 0.26 6.77 6 Fluorescence:URU:Seapoint mg/m^3 0.131 2.027 7 Bottle_Number n/a 1 23 8 Salinity:T0:C0 PSS-78 32.5121 34.6486 9 Number_of_bin_records n/a 118 121 10 Salinity:Bottle PSS-78 32.5133 34.6504 11 Flag:Salinity:Bottle n/a 12 Nitrate_plus_Nitrite umol/L 2.8 45 13 Flag:Nitrate_plus_Nitrite n/a 14 Silicate umol/L 6 179.5 15 Flag:Silicate n/a 16 Phosphate umol/L 0.63 3.27 17 Flag:Phosphate n/a 18 Oxygen:Dissolved mL/L 0.249 6.719 19 Flag:Oxygen:Dissolved n/a 20 Carbon:Dissolved:Inorganic umol/kg 1974.24 2387.89 21 Flag:Carbon:Dissolved:Inorganic n/a 22 Alkalinity:Total umol/kg 2123.56 2432.78 23 Flag:Alkalinity:Total n/a $END $TABLE: CHANNEL DETAIL ! No Pad Start Width Format Type Decimal_Places !--- ---- ----- ----- ------ ---- -------------- 1 -99 ' ' 5 I I 0 2 -99 ' ' 7 F ' ' 1 3 -99 ' ' 9 F ' ' 4 4 -99 ' ' 6 F ' ' 1 5 -99 ' ' 7 F ' ' 2 6 -99 ' ' 8 F ' ' 3 7 -99 ' ' 3 I I 0 8 -99 ' ' 9 F ' ' 4 9 ' ' ' ' 5 I I 0 10 -99 ' ' 9 F R4 4 11 0 ' ' 2 NQ C ' ' 12 -99 ' ' 6 F R4 1 13 0 ' ' 2 NQ C ' ' 14 -99 ' ' 6 F R4 1 15 0 ' ' 2 NQ C ' ' 16 -99 ' ' 7 F R4 2 17 0 ' ' 2 NQ C ' ' 18 -99 ' ' 8 F ' ' 3 19 0 ' ' 2 NQ C ' ' 20 -99 ' ' ' ' F8.2 R4 ' ' 21 0 ' ' 3 NQ C ' ' 22 -99 ' ' ' ' F8.2 R4 ' ' 23 0 ' ' 3 NQ C ' ' $END $REMARKS Flag channels initialized with zeros. Non-zero values have the following significance: -------------------------------------------------------------------------------------- 1 = Sample for this measurement was drawn from water bottle but not analyzed (not normally used). 2 = Acceptable measurement (not normally used). 3 = Questionable measurement (no problem observed in sampling or analysis, but value is not trusted, nonetheless; includes outlyers). 4 = Bad measurement (known problem with sampling or analysis, but not serious enough to completely discard the value). 5 = Not reported (lost sample; unredeemably bad measurement). 6 = Mean of replicate measurements. 7 = Manual chromatographic peak measurement. 8 = Irregular digital chromatographic peak integration. 9 = Sample not drawn for this measurement from this bottle (not normally used). -------------------------------------------------------------------------------------- $END *ADMINISTRATION MISSION : 2004-10 AGENCY : IOS, Ocean Science and Productivity, Sidney, B.C. COUNTRY : Canada PROJECT : Line P SCIENTIST : Robert M. PLATFORM : John P. Tully *LOCATION GEOGRAPHIC AREA : N.E. Pacific STATION : P12 EVENT NUMBER : 19 LATITUDE : 48 58.23000 N ! (deg min) LONGITUDE : 130 39.90000 W ! (deg min) WATER DEPTH : 3300 ALTIMETER (M) : 5.25 ! custom item $REMARKS Altimeter value is distance from bottom and is calculated as the median of the deepest 2 metres of data. $END *INSTRUMENT TYPE : Sea-Bird CTD MODEL : SBE-911plus SERIAL NUMBER : 0585 $TABLE: SENSORS ! Name Abs Depth Serial No ! ------------------------- -------------- ---------- temperature:primary ' ' 2023 conductivity:primary ' ' 1763 pressure ' ' 77511 temperature:secondary ' ' 2095 conductivity:secondary ' ' 1764 Fluorometer ' ' Seapoint Oxygen:SBE ' ' 0047 transmissometer:primary ' ' 333DR irradiance ' ' primary altimeter: ' ' ' ' $END $REMARKS SOFTWARE VERSION SEASAVE WIN32 V 5.30A Comments from secondary file: Q:\Cruise_Data\2004-10\CTD files\hydro\2004-10-0019.add ------------------------------------------------------- Dissolved oxygen concentration determined using an automated titration system consisting of a Brinkman dosimat (model 665) and a PC 900 Colorimeter. $END *HISTORY $TABLE: PROGRAMS ! Name Vers Date Time Recs In Recs Out ! -------- ------ ---------- -------- --------- --------- SBE_IOS 2.7 2004/08/02 13:51:01 2783 2783 CLEAN 4.7 2004/08/02 13:52:24 ? ? ADDSAMP 3.4 2004/08/04 17:32:05 2783 2783 BINAVE 4.0.1 2004/08/04 17:34:14 2783 23 MERGE 3.1 2004/08/05 08:47:51 23 23 MERGE 3.1 2004/08/05 08:56:19 23 23 CALIB 11.4 2004/08/13 14:37:13 23 23 CLEAN 4.7 2004/08/17 12:47:03 ? ? SORT 3.4.1 2004/08/17 12:49:25 23 23 REMOVECH 6.0 2004/08/17 12:53:53 23 23 HDREDIT2 2.2 2004/08/17 13:01:51 ? ? SORT 3.4.1 2004/09/28 15:38:25 23 23 MERGE 3.1 2004/09/28 15:38:30 23 23 SORT 3.4.1 2004/09/28 15:42:30 23 23 CALIB 11.4 2004/09/29 14:49:27 23 23 SORT 3.5 2004/11/03 15:51:05 23 23 MERGE 3.3 2004/11/03 15:51:50 23 23 SORT 3.5 2004/11/03 16:00:22 23 23 HDREDIT2 2.3 2004/12/07 14:37:39 ? ? REMOVECH 6.0 2005/02/04 11:29:31 23 23 HDREDIT2 2.4 2005/02/04 12:07:43 ? ? REMOVECH 7.0 2005/09/19 16:20:41 23 23 SORT 3.5 2005/09/19 16:21:42 23 23 MERGE 3.3 2005/09/19 16:22:50 23 23 SORT 3.5 2005/09/19 16:34:27 23 23 CALIB 11.6 2005/10/12 13:52:13 23 23 HDREDIT2 2.5 2005/11/04 10:57:59 ? ? SORT 3.5 2010/04/05 15:47:48 23 23 MERGE 3.3 2010/04/05 15:54:57 23 23 HDREDIT2 2.5.1 2010/04/05 15:59:49 ? ? $END $REMARKS -CLEAN functions: Set event to last 4 characters of file name -The following ADDSAMP parameters were used: Sample Number Lookup File: Q:\Cruise_Data\2004-10\CTD files\hydro\addsamp.csv Bottle Channel Name: Bottle_Number -The following BINAVE parameters were used: Bin channel = Bottle_Number Averaging interval = 1.00 Minimum bin value = 0.000 Average value was used Interpolated values were NOT used for empty bins Channel 'NUMBER_OF_BIN_RECORDS' was added to file. -MERGE *** Secondary file not found *** Primary file : Q:\Cruise_Data\2004-10\CTD files\hydro\2004-10-0019.samavg Secondary file: Q:\Cruise_Data\2004-10\CTD files\hydro\2004-10-0019.sal -The following MERGE parameters were used: Merge Channel: Sample_Number Merge Scheme Used: Add Secondary to Primary Overlap Scheme Used: Keep Primary Primary Channels to Include: ALL Secondary Channels to Include: Oxygen:Dissolved, Flag:Oxygen:Dissolved Primary file : Q:\Cruise_Data\2004-10\CTD files\hydro\2004-10-0019.mrg1 Secondary file: Q:\Cruise_Data\2004-10\CTD files\hydro\2004-10-0019.add Comments from secondary file: Q:\Cruise_Data\2004-10\CTD files\hydro\2004-10-0019.add ------------------------------------------------------- C.H. Culbertson's paper on Dissolved Oxygen in the 'Woce Hydrographic Program Operations and Methods - July 1991' -The following OXYCALC parameters were used Blank = 0.002 Sodium Thiosulfate concentration = 0.715 Volume of iodate standard (cm**3) = 9.98 Enter Normalitity of iodate standard = 0.01013000 -The following CALIB parameters were used: Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = Q:\Cruise_Data\2004-10\CTD files\doc\2004-10-recal1.ccf Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 9 Oxygen:Dissolved:SBE mL/L 10 0.3310000E-01 0.1077200E+01 17 Salinity:T0:C0 PSS-78 10 0.1000000E-02 0.1000000E+01 -CLEAN functions: Remove Sea-Bird comments from the header. -The following SORT parameters were used. Sorted by channel: Pressure Pressure channel sorted according to values in sort channel -The following CHANNEL(S) were removed from file. Scan_Number Temperature:Secondary Conductivity:Primary Conductivity:Secondary Oxygen:Voltage:SBE Status:Pump Altimeter Descent_Rate Salinity:T1:C1 Flag -HEADER EDITS: Applied edit header: O:\Data Processing\Header Comments\sal_oxy_chl_fresh_nut_a Channel 1: Sample_Number [n/a] Pad: -9 ==> -99 Channel 2: Pressure [decibar] Units ==> dbars Format: F10.3 ==> F7.1 Channel 3: Temperature:Primary [deg C (ITS90)] (no changes) Channel 4: Transmissivity [%/metre] (no changes) Channel 5: Oxygen:Dissolved:SBE [mL/L] Format: F8.3 ==> F7.2 Channel 6: PAR [uE/m^2/sec] Format: F11.3 ==> F7.1 Channel 7: Fluorescence:URU:Seapoint [mg/m^3] (no changes) Channel 8: Bottle_Number [n/a] (no changes) Channel 9: Salinity:T0:C0 [PSS-78] (no changes) Channel 10: Number_of_bin_records [n/a] Format: F5.0 ==> I5 Channel 11: Oxygen:Dissolved [mL/L] (no changes) Channel 12: Flag:Oxygen:Dissolved [] Units ==> n/a Pad: 0 ==> blank -The following SORT parameters were used. Sorted by channel: Sample_Number Pressure channel sorted according to values in sort channel -The following MERGE parameters were used: Merge Channel: Sample_Number Merge Scheme Used: Add Secondary to Primary Overlap Scheme Used: Keep Primary Primary Channels to Include: ALL Secondary Channels to Include: Salinity:Bottle, Flag:Salinity:Bottle Primary file : Q:\Cruise_Data\2004-10\2004-10-0019.mrg Secondary file: Q:\Cruise_Data\2004-10\2004-10-0019.sal -The following SORT parameters were used. Sorted by channel: Sample_Number Pressure channel sorted according to values in sort channel -The following CALIB parameters were used: Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = Q:\Cruise_Data\2004-10\DOC new\2004-10-recal3.ccf Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 9 Salinity:T0:C0 PSS-78 10 0.5000000E-03 0.1000000E+01 -SORT parameters: 2004/11/03 15:51:05 Sorted in descending order of channel Sample_Number -The following MERGE parameters were used: 2004/11/03 15:51:50 2004/11/03 15:51: Merge Channel: Sample_Number Merge Scheme Used: Interweave Records from Both Files Overlap Scheme Used: Keep Primary Primary Channels to Include: ALL Secondary Channels to Include: Nitrate_plus_Nitrite, Flag:Nitrate_plus_Nitrite, Silicate, Flag:Silicate, Phosphate, Flag:Phosphate, Chlorophyll:Extracted, Flag:Chlorophyll:Extracted Primary file : H:\Data Processing\2004\2004-10\2004-10-0019.srt_che Secondary file: H:\Data Processing\2004\2004-10\2004-10-0019.mrg Comments from secondary file: H:\Data Processing\2004\2004-10\2004-10-0019.mrg ------------------------------------------------ -MERGE *** Secondary file not found *** Primary file : H:\Data Processing\2004\2004-10\2004-10-0019.nut Secondary file: H:\Data Processing\2004\2004-10\2004-10-0019.chl -SORT parameters: 2004/11/03 16:00:22 Sorted in ascending order of channel Pressure -HEADER EDITS: 2004/12/07 14:37:39 Applied edit header: H:\STNPCHEM\Work\HEADERS\Geographic Area.txt -The following CHANNEL(S) were removed from file. PAR -HEADER EDITS: 2005/02/04 12:07:43 Channel 12: Salinity:Bottle [PSS-78] Units: ==> PSS-78 -REMOVECH 2005/09/19 16:20:41 The following CHANNEL(S) were removed: Oxygen:Dissolved [mL/L] Flag:Oxygen:Dissolved -SORT parameters: 2005/09/19 16:21:42 Sorted in ascending order of channel Sample_Number -The following MERGE parameters were used: 2005/09/19 16:22:49 2005/09/19 16:22:50 2005/09/19 16:22: Merge Channel: Sample_Number Merge Scheme Used: Interweave Records from Both Files Overlap Scheme Used: Keep Primary Primary Channels to Include: ALL Secondary Channels to Include: Oxygen:Dissolved, Flag:Oxygen:Dissolved Primary file : H:\Data Processing\Oxygen redo\2004-10\2004-10-0019.srtrem Secondary file: H:\Data Processing\Oxygen redo\2004-10\2004-10-0019.clnadd Comments from secondary file: H:\Data Processing\Oxygen redo\2004-10\2004-10-0019.clnadd ---------------------------------------------------------- C.H. Culbertson's paper on Dissolved Oxygen in the 'Woce Hydrographic Program Operations and Methods - July 1991' -The following OXYCALC parameters were used Blank = 0.002 -SORT parameters: 2005/09/19 16:34:27 -CALIB parameters: 2005/10/12 13:52:13 -HEADER EDITS: 2005/11/04 10:57:59 -SORT parameters: 2010/04/05 15:47:48 Sorted in ascending order of channel Sample_Number -The following MERGE parameters were used: 2010/04/05 15:54:57 2010/04/05 15:54:57 Merge Channel: Sample_Number Merge Scheme Used: Add Secondary to Primary Overlap Scheme Used: Average Primary Channels to Include: ALL Secondary Channels to Include: Carbon:Dissolved:Inorganic, Flag:Carbon:Dissolved:Inorganic, Alkalinity:Total, Flag:Alkalinity:Total Primary file : H:\Cruise_Data_Processing\Lisa Miller's Carbon Data\2004-10\2004-10-0019.chesrt Secondary file: H:\Cruise_Data_Processing\Lisa Miller's Carbon Data\2004-10\2004-10-0019.iossrt Comments from secondary file: H:\Cruise_Data_Processing\Lisa Miller's Carbon Data\2004-10\2004-10-0019.iossrt --------------------------------------------------------------------------- -SORT parameters: 2010/04/05 15:47:17 Sorted in ascending order of channel Sample_Number -HEADER EDITS: 2010/04/05 15:59:49 Applied edit header: H:\Cruise_Data_Processing\Lisa Miller's Carbon Data\DIC_ALK.txt -SORT parameters: 2010/04/05 16:05:17 Sorted in ascending order of channel Pressure $END *COMMENTS Comments from secondary file: Q:\Cruise_Data\2004-10\CTD files\hydro\2004-10-0019.add ------------------------------------------------------- Oxygen flag d- the flask was cracked near the top; sample value may not have be Analysis methods: ----------------- Salinity samples are collected in glass bottles and analyzed on Guildline model 8410 Portasal Salinometers which are standardized with IAPSO standard seawater. Oxygen samples are analyzed on an automated Winkler titration system following the procedures of Carpenter (1965). A Brinkmann model 665 Dosimat and model PC910 Colorimeter is controlled by Visual-Basic program to titrate the oxygen samples. Nutrient samples are analyzed fresh on board using a Technicon AAII auto- analyzer following methods described in Barwell-Clarke and Whitney (1996). Chlorophyll samples are collected in duplicate in calibrated polycarbonate bottles (~330ml), then filtered onto 25mm MFS GF/75 filters at <70mmHg vacuum. The filters are placed in glass scintillation vials and immediately frozen at -20ºC until analysis. The chlorophyll is extracted in 10 ml of 90% acetone for 24h at -20ºC, then brought to room temperature and the extract is decanted and measured using a Turner Designs 10-AU-005-CE fluorometer, which has been calibrated with solutions of commercially prepared chlorophyll. Dissolved inorganic carbon (DIC) was determined using coulometric analysis. Total alkalinity (Alk) was determined by potentiometric titration. Complete documentation on DIC and ALK sampling, analysis and precision estimates can be found in the Carbon Excel file from the cruise located in the cruise "DOC" directory. . References: 1. Carpenter, J.H. 1965. The Chesapeake Bay Institute Technique for the Winkler Dissolved Oxygen Method. Limmnol. & Oceanogr., 10: 141-143. 2. J. Barwell-Clarke and F. Whitney. 1996. Institute of Ocean Sciences Nutrient Methods and Analysis. Canadian Technical Report of Hydrography and Ocean Sciences, No. 182, 43 pp. Comments from secondary file: H:\Data Processing\Oxygen redo\2004-10\2004-10-0019.clnadd ---------------------------------------------------------- This cast was run through the DOXX program to change the standard values Comments from secondary file: H:\Cruise_Data_Processing\Lisa Miller's Carbon Data\2004-10\2004-10-0019.iossrt --------------------------------------------------------------------------- Sample_Number 95: Niskin 6 leaks *CALIBRATION $TABLE: CORRECTED CHANNELS ! Name Units Fmla Pad Coefficients ! ---------------------- -------- ---- ------ ------------ Oxygen:Dissolved:SBE mL/L 10 -99 () (0.331E-01 1.0772) Salinity:T0:C0 PSS-78 10 -99 () (0.1E-02 1) Salinity:T0:C0 PSS-78 10 -99 () (0.5E-03 1) Oxygen:Dissolved:SBE mL/L 10 -99 () (0 1.005) $END !-1-- --2--- ---3---- --4-- --5--- ---6--- 7- ---8---- -9-- ---10--- - --12- - --14- - --16-- - ---18-- - ---20-- 21 ---22-- 23 !Samp Pressu Temperat Trans Oxygen Fluores Bo Salinity Numb Salinity F Nitra F Silic F Phosph F Oxygen: F Carbon: Fl Alkalin Fl !le_ re ure: missi : cence: tt :T0:C0 er_o :Bottle l te_ l ate l ate l Dissolv l Dissolv ag ity: ag !Numb Primary vity Dissol URU: ~u ~bin ~ plus_ ~ ~ ~ ed ~ ed: ~g Total ~T !er ved: Seapoin mb _rec l Nitri t t t e Inorgan an ot ! SBE t er ords e te e e e d ic ic al !---- ------ -------- ----- ------ ------- -- -------- ---- -------- - ----- - ----- - ------ - ------- - ------- -- ------- -- *END OF HEADER 112 5.8 12.3781 45.9 6.68 1.279 23 32.5280 120 32.5257 0 2.8 0 6.0 0 0.63 0 6.596 0 1976.31 0 2133.86 0 111 10.4 12.3452 46.2 6.69 1.349 22 32.5272 121 32.5280 0 2.8 0 6.2 0 0.66 0 6.608 0 1979.66 0 2123.56 0 110 25.1 11.7221 45.9 6.77 2.027 21 32.5121 121 32.5133 0 2.8 0 6.9 0 0.66 0 6.719 0 1974.24 0 2129.51 0 109 51.2 9.0759 55.4 6.76 1.373 20 32.5491 121 32.5520 0 6.6 0 7.2 0 0.90 0 6.673 0 2007.55 0 2196.70 0 108 75.4 8.3301 59.7 6.34 0.355 19 32.6528 121 32.6696 0 10.4 0 10.8 0 1.08 0 6.271 0 2033.13 0 2140.84 0 107 100.3 7.4148 60.3 5.17 0.189 18 33.2476 120 33.2683 0 19.3 0 22.7 0 1.54 0 5.113 0 2105.04 0 2183.08 0 106 125.6 6.9397 60.4 4.72 0.148 17 33.5035 121 33.5062 0 22.6 0 28.8 0 1.71 0 4.694 0 2133.85 0 2201.55 0 105 150.6 6.7414 60.5 4.27 0.136 16 33.6788 120 33.6766 0 24.9 0 34.6 0 1.85 0 4.245 0 2156.96 0 2209.97 0 104 174.8 6.6344 60.5 3.98 0.132 15 33.7916 121 33.7872 0 26.8 0 39.6 0 1.96 0 3.866 0 2174.10 0 2231.36 0 103 200.2 6.4094 60.6 3.59 0.134 14 33.8465 121 33.8460 0 28.3 0 44.6 0 2.08 0 3.594 0 2181.06 0 2236.35 0 102 248.0 5.8155 60.9 3.16 0.131 13 33.8632 121 33.8644 0 31.5 0 53.4 0 2.27 0 3.152 0 2205.04 0 2280.17 0 101 301.8 5.3432 61.1 2.35 0.134 12 33.8948 118 33.8955 0 35.5 0 63.4 0 2.55 0 2.351 0 2238.08 0 2295.26 0 100 400.1 4.7035 61.5 1.57 0.134 11 33.9554 121 33.9557 0 39.9 0 78.8 0 2.84 0 1.567 0 2275.33 0 2309.24 0 99 601.3 4.1712 61.9 0.55 0.136 10 34.1454 121 34.1427 0 43.7 0 103.7 0 3.13 0 0.544 0 2329.47 0 2337.48 0 98 800.7 3.7747 -99.0 0.26 0.138 9 34.2993 121 34.2991 0 44.4 0 122.5 0 3.26 0 0.249 0 2358.01 0 2366.26 0 97 1001.0 3.3146 -99.0 0.28 0.139 8 34.3808 121 34.3816 0 44.9 0 136.6 0 3.27 0 0.257 0 2371.46 0 2364.67 0 96 1246.1 2.8447 -99.0 0.41 0.137 7 34.4556 120 34.4557 0 45.0 0 151.5 0 3.25 0 0.393 0 2383.60 0 2387.09 0 95 1499.2 2.4118 -99.0 0.67 0.138 6 34.5090 120 34.5088 0 44.9 0 164.5 0 3.18 0 0.658 0 2387.89 3 2401.71 3 93 2000.6 1.9313 62.0 1.40 0.135 4 34.5904 121 34.5911 0 42.6 0 176.0 0 3.03 0 1.413 0 2381.70 6 2414.38 6 94 2000.6 1.9314 62.0 1.40 0.134 5 34.5903 121 34.5918 0 42.4 0 175.5 0 3.04 0 1.409 0 2381.89 0 2413.27 0 92 2500.0 1.7254 61.7 1.94 0.132 3 34.6299 121 34.6307 0 41.3 0 178.9 0 2.92 0 1.970 0 2378.28 0 2422.70 0 91 3001.9 1.6531 61.6 2.25 0.132 2 34.6469 121 34.6485 0 40.0 0 179.5 0 2.85 0 2.453 0 2365.29 0 2427.37 0 90 3280.7 1.6681 61.5 2.30 0.132 1 34.6486 121 34.6504 0 40.1 0 178.7 0 2.84 0 2.413 0 2365.34 0 2432.78 0