*2014/11/20 09:53:59.93 *IOS HEADER VERSION 1.10 2011/10/26 2011/10/26 *FILE START TIME : UTC 2003/09/17 00:39:42.000 TIME INCREMENT : 0 0 0 0.416667E-01 0 ! (day hr min sec ms) NUMBER OF RECORDS : 12 DATA DESCRIPTION : Bottle:Rosette:Up:Stop + CTD:Up FILE TYPE : ASCII NUMBER OF CHANNELS : 22 $TABLE: CHANNELS ! No Name Units Minimum Maximum !--- --------------------------- --------------- -------------- -------------- 1 Sample_Number n/a 474 485 2 Pressure decibar 5.3 137.2 3 Temperature:Primary 'deg C (ITS90)' 6.7415 12.9635 4 Transmissivity %/metre 35.4 57.9 5 Oxygen:Dissolved:SBE mL/L 2.35 6.2 6 Bottle_Number n/a 1 12 7 Salinity:T0:C0 PSS-78 31.4533 33.2073 8 Number_of_bin_records n/a 119 121 9 Salinity:Bottle PSS-78 31.4163 33.1783 10 Flag:Salinity:Bottle n/a 11 Oxygen:Dissolved mL/L 2.436 6.212 12 Flag:Oxygen:Dissolved n/a 13 Nitrate_plus_Nitrite umol/L 4.2 31.3 14 Flag:Nitrate_plus_Nitrite n/a 15 Silicate umol/L 9.2 59.5 16 Flag:Silicate n/a 17 Phosphate umol/L 0.57 2.51 18 Flag:Phosphate n/a 19 Methane nmol/L 5.4 6.5 20 Ethane nmol/L 0 0 21 Ethylene nmol/L 0 0.1 22 Propane nmol/L 0 0 $END $TABLE: CHANNEL DETAIL ! No Pad Start Width Format Type Decimal_Places !--- ---- ----- ----- ------ ---- -------------- 1 -9 ' ' 5 I I ' ' 2 -99 ' ' 7 F ' ' 1 3 -99 ' ' 9 F ' ' 4 4 -99 ' ' 6 F ' ' 1 5 -99 ' ' 7 F ' ' 2 6 -99 ' ' 3 I I ' ' 7 -99 ' ' 9 F ' ' 4 8 ' ' ' ' 5 I I 0 9 -99 ' ' ' ' F9.4 R4 ' ' 10 0 ' ' 2 NQ C ' ' 11 -99 ' ' 8 F ' ' 3 12 0 ' ' 2 NQ C ' ' 13 -99 ' ' ' ' F6.1 R4 ' ' 14 0 ' ' 2 NQ C ' ' 15 -99 ' ' ' ' F6.1 R4 ' ' 16 0 ' ' 2 NQ C ' ' 17 -99 ' ' ' ' F7.2 R4 ' ' 18 0 ' ' 2 NQ C ' ' 19 -99 ' ' ' ' F7.1 R4 ' ' 20 -99 ' ' ' ' F6.1 R4 ' ' 21 -99 ' ' ' ' F6.1 R4 ' ' 22 -99 ' ' ' ' F6.1 R4 ' ' $END $REMARKS Flag channels initialized with zeros. Non-zero values have the following significance: -------------------------------------------------------------------------------------- 1 = Sample for this measurement was drawn from water bottle but not analyzed (not normally used). 2 = Acceptable measurement (not normally used). 3 = Questionable measurement (no problem observed in sampling or analysis, but value is not trusted, nonetheless; includes outlyers). 4 = Bad measurement (known problem with sampling or analysis, but not serious enough to completely discard the value). 5 = Not reported (lost sample; unredeemably bad measurement). 6 = Mean of replicate measurements. 7 = Manual chromatographic peak measurement. 8 = Irregular digital chromatographic peak integration. 9 = Sample not drawn for this measurement from this bottle (not normally used). -------------------------------------------------------------------------------------- $END *ADMINISTRATION MISSION : 2003-27 AGENCY : IOS, Ocean Science and Productivity, Sidney, B.C. COUNTRY : Canada PROJECT : Line P SCIENTIST : Whitney F. PLATFORM : John P. Tully *LOCATION GEOGRAPHIC AREA : Gulf of Alaska STATION : JP 3 EVENT NUMBER : 111 LATITUDE : 52 36.83000 N ! (deg min) LONGITUDE : 130 41.08000 W ! (deg min) WATER DEPTH : 135 *INSTRUMENT TYPE : Sea-Bird CTD MODEL : SBE-911plus SERIAL NUMBER : 0550 $TABLE: SENSORS ! Name Abs Depth Serial No ! ------------------------- -------------- ---------- temperature:primary ' ' 2038 conductivity:primary ' ' 2173 pressure ' ' 75636 temperature:secondary ' ' 2968 conductivity:secondary ' ' 1729 altimeter: ' ' ' ' Oxygen:SBE ' ' 0047 transmissometer:primary ' ' 498DR $END $REMARKS SOFTWARE VERSION SEASAVE WIN32 V 5.29B Comments from secondary file: Q:\Cruise_Data\2003-27\hydro\2003-27-0111.dox --------------------------------------------- Dissolved oxygen concentration determined using an automated titration system consisting of a Brinkman dosimat (model 665) and a PC 900 Colorimeter. $END *HISTORY $TABLE: PROGRAMS ! Name Vers Date Time Recs In Recs Out ! ------------------------ ------ ---------- -------- --------- --------- SBE_IOS 2.6 2003/10/21 12:16:52 1452 1452 CLEAN 4.5 2003/10/21 12:18:30 1452 1452 ADDSAMP 3.4 2003/11/20 13:04:59 1452 1452 BINAVE 4.0.1 2003/11/20 13:15:30 1452 12 MERGE 3.1 2003/11/20 15:31:46 12 12 MERGE 3.1 2003/11/20 16:03:49 12 12 CALIB 11.2 2003/12/16 14:20:00 12 12 HDREDIT2 1.8 2003/12/17 15:47:38 ? ? CLEAN 4.5 2003/12/17 16:11:14 ? ? REVERSE 2.0 2003/12/18 09:57:16 12 12 REMOVECH 6.0 2003/12/18 09:59:16 12 12 HDREDIT2 1.8 2003/12/18 10:08:23 ? ? REVERSE 2.0 2003/12/19 14:05:02 12 12 MERGE 3.1 2003/12/19 14:10:07 12 12 MERGE 3.1 2003/12/19 14:22:21 12 12 HDREDIT2 1.8 2003/12/19 14:24:38 ? ? CLEAN 4.5 2003/12/19 14:25:46 12 12 REVERSE 2.0 2003/12/19 14:27:43 12 12 SORT 3.4.1 2004/04/23 11:57:00 12 12 MERGE 3.3 2005/01/28 16:02:39 12 12 CHANGE_FLAGS 1.0 2013/07/16 11:47:26 12 12 CHANGE_CTD_CHANNEL_NAMES 1.0 2013/12/16 15:28:44 12 12 CHANGE_FLAGS 2.0 2014/11/20 09:53:59 12 12 $END $REMARKS CLEAN functions: - Interpolation by Record Number, in Pressure - Set event to last 4 characters of file name -The following ADDSAMP parameters were used: Sample Number Lookup File: Q:\Cruise_Data\2003-27\hydro\addsamp.csv Bottle Channel Name: Bottle_Number -The following BINAVE parameters were used: Bin channel = Bottle_Number Averaging interval = 1.00 Minimum bin value = 0.000 Average value was used Interpolated values were NOT used for empty bins Channel 'NUMBER_OF_BIN_RECORDS' was added to file. -The following MERGE parameters were used: Merge Channel: Sample_Number Merge Scheme Used: Add Secondary to Primary Overlap Scheme Used: Keep Primary Primary Channels to Include: ALL Secondary Channels to Include: Salinity:bottle, Flag:Salinity:Bottle Primary file : Q:\Cruise_Data\2003-27\hydro\2003-27-0111.samavg Secondary file: Q:\Cruise_Data\2003-27\hydro\2003-27-0111.sal -The following MERGE parameters were used: Merge Channel: Sample_Number Merge Scheme Used: Add Secondary to Primary Overlap Scheme Used: Keep Primary Primary Channels to Include: ALL Secondary Channels to Include: Oxygen:Dissolved, Flag:Oxygen:Dissolved Primary file : Q:\Cruise_Data\2003-27\hydro\2003-27-0111.mrg1 Secondary file: Q:\Cruise_Data\2003-27\hydro\2003-27-0111.dox Comments from secondary file: Q:\Cruise_Data\2003-27\hydro\2003-27-0111.dox --------------------------------------------- C.H. Culbertson's paper on Dissolved Oxygen in the 'Woce Hydrographic Program Operations and Methods - July 1991' -The following CALIB parameters were used: Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = Q:\Cruise_Data\2003-27\doc\2003-27-recal1.ccf Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 3 Pressure dbars 10 0.2000000E+01 0.1000000E+01 9 Oxygen:Dissolved:SBE mL/L 10 -0.1430000E-01 0.1136200E+01 14 Salinity:T0:C0 PSS-78 10 -0.4000000E-02 0.1000000E+01 15 Salinity:T1:C1 PSS-78 10 -0.6000000E-02 0.1000000E+01 CLEAN functions: - Remove Sea-Bird comments from the header. -The following CHANNEL(S) were removed from file. Scan_Number Temperature:Secondary Conductivity:Primary Conductivity:Secondary Altimeter Status:Pump Descent_Rate Salinity:T1:C1 Flag -The following MERGE parameters were used: Merge Channel: Sample_Number Merge Scheme Used: Interweave Records from Both Files Overlap Scheme Used: Keep Primary Primary Channels to Include: ALL Secondary Channels to Include: Nitrate_plus_Nitrite, Flag:Nitrate_plus_Nitrite, Silicate, Flag:Silicate, Phosphate, Flag:Phosphate, Ammonium, Flag:Ammonium Primary file : H:\Cruise_Data\2003-27\Merge\2003-27-0111.rev_che Secondary file: H:\Cruise_Data\2003-27\Merge\2003-27-0111.rev_nut -MERGE *** Secondary file not found *** Primary file : H:\Cruise_Data\2003-27\Merge\2003-27-0111.mrg Secondary file: H:\Cruise_Data\2003-27\Merge\2003-27-0111.rev_chl CLEAN functions: - Reset #RECS, MIN & MAX values in header. - Change Pad Value to -99 in Channel: Oxygen:Dissolved [mL/L] - Delete Empty Channels: 2 deleted. -The following SORT parameters were used. Sorted by channel: Pressure Pressure channel sorted according to values in sort channel -The following MERGE parameters were used: 2005/01/28 16:02:39 2005/01/28 16:02: Merge Channel: Sample_Number Merge Scheme Used: Interweave Records from Both Files Overlap Scheme Used: Keep Primary Primary Channels to Include: ALL Secondary Channels to Include: Methane, Ethane, Ethylene, Propane Primary file : H:\Data Processing\2003\2003-27\2003-27-0111.che Secondary file: H:\Data Processing\2003\2003-27\2003-27-0111.gas $END *COMMENTS Comments from secondary file: Q:\Cruise_Data\2003-27\hydro\2003-27-0111.sal --------------------------------------------- Salinity samples were analyzed onboard ship by Ron Perkin. For casts #110 - #127, the calibration of the Portasal was shifted after analysi on standby values. An offset of -0.002 was applied to the salinity values. Sample # 474: Flagged as outlier in COMPARE and analyst noted drift during analy ------------------------------------------------------- An altimeter was mounted below the CTD. At the time the deepest bottle was fired the altimeter indicated it was 2.6m above the bottom. Analysis methods: ----------------- Salinity samples are collected in glass bottles and analyzed on Guildline model 8410 Portasal Salinometers which are standardized with IAPSO standard seawater. Oxygen samples are analyzed on an automated Winkler titration system following the procedures of Carpenter (1965). A Brinkmann model 665 Dosimat and model PC910 Colorimeter is controlled by Visual-Basic program to titrate the oxygen samples. Nutrient samples are analyzed fresh on board using a Technicon AAII auto- analyzer following methods described in Barwell-Clarke and Whitney (1996). Chlorophyll samples are collected in duplicate in calibrated polycarbonate bottles (~330ml), then filtered onto 25mm MFS GF/75 filters at <70mmHg vacuum. The filters are placed in glass scintillation vials and immediately frozen at -20ºC until analysis. The chlorophyll is extracted in 10 ml of 90% acetone for 24h at -20ºC, then brought to room temperature and the extract is decanted and measured using a Turner Designs 10-AU-005-CE fluorometer, which has been calibrated with solutions of commercially prepared chlorophyll. Light hydrocarbon samples are collected in glass serum bottles (120 ml) with no headspace, preserved with mercuric chloride, crimped closed and kept cool until analysis back at IOS. The samples are analyzed using a custom purge and trap GC-FID. The seawater is purged with helium and the hydrocarbons are trapped on a Porasil B adsorbent at -190oC. The trap is then isolated, warmed to 40oC and injected into an Agilent 6890 GC with a 60m GasPro column and an FID. Hydrocarbon identification is by retention time and quantitation is by peak area comparison to a commercial standard calibration gas (BOC). The lowest reportable limit is 0.1 nmol/l with a precision of <4%. A value of 0.0 in the data record designates <0.1. References: 1. Carpenter, J.H. 1965. The Chesapeake Bay Institute Technique for the Winkler Dissolved Oxygen Method. Limmnol. & Oceanogr., 10: 141-143. 2. J. Barwell-Clarke and F. Whitney. 1996. Institute of Ocean Sciences Nutrient Methods and Analysis. Canadian Technical Report of Hydrography and Ocean Sciences, No. 182, 43 pp. *CALIBRATION $TABLE: CORRECTED CHANNELS ! Name Units Fmla Pad Coefficients ! ---------------------- -------- ---- ------ ------------ Pressure dbars 10 -99 () (2 1) Oxygen:Dissolved:SBE mL/L 10 -99 () (-0.143E-01 1.1362) Salinity:T0:C0 PSS-78 10 -99 () (-0.4E-02 1) Salinity:T1:C1 PSS-78 10 -99 () (-0.6E-02 1) $END !-1-- --2--- ---3---- --4-- --5--- 6- ---7---- -8-- ---9---- - ---11-- - --13- - --15- - --17-- - --19-- --20- --21- --22- !Samp Pressu Temperat Trans Oxygen Bo Salinity Numb Salinity F Oxygen: F Nitra F Silic F Phosph F Methan Ethan Ethyl Propa !le_ re ure: missi : tt :T0:C0 er_o :Bottle l Dissolv l te_ l ate l ate l e e ene ne !Numb Primary vity Dissol ~u ~bin ~ ed ~ plus_ ~ ~ ~ !er ved: mb _rec l e Nitri t t t ! SBE er ords e d te e e e !---- ------ -------- ----- ------ -- -------- ---- -------- - ------- - ----- - ----- - ------ - ------ ----- ----- ----- *END OF HEADER 485 5.3 12.9635 35.4 6.20 12 31.4533 121 31.4163 0 6.198 0 4.2 0 9.8 0 0.57 0 5.5 0.0 0.0 0.0 484 11.4 12.6903 45.1 6.14 11 31.5102 120 31.5233 0 6.212 0 4.8 0 9.2 0 0.70 0 5.4 0.0 0.0 0.0 483 21.6 11.8865 52.4 5.54 10 31.6787 121 31.7039 0 5.480 0 7.9 0 13.2 0 1.00 0 5.9 0.0 0.1 0.0 482 31.6 11.1715 56.5 5.05 9 31.8182 119 31.8406 0 4.980 0 11.2 0 18.6 0 1.23 0 5.8 0.0 0.0 0.0 481 51.9 8.7284 57.9 3.82 8 32.3201 120 32.3496 0 3.798 0 22.6 0 38.6 0 1.89 0 6.1 0.0 0.0 0.0 480 77.2 7.6095 57.0 3.14 7 32.7960 119 32.8296 0 3.060 0 27.3 0 50.4 0 2.22 0 6.3 0.0 0.0 0.0 479 101.4 7.2209 55.7 2.81 6 32.9749 121 32.9806 0 2.891 0 29.0 0 54.5 0 2.34 0 6.3 0.0 0.0 0.0 478 121.7 7.0892 55.3 2.68 5 33.0365 121 33.0426 0 2.647 0 29.8 0 56.3 0 2.41 0 6.3 0.0 0.0 0.0 477 128.2 6.8848 54.8 2.49 4 33.1351 120 33.1369 0 2.437 0 30.9 0 59.2 0 2.47 0 6.5 0.0 0.0 0.0 476 132.1 6.8391 55.1 2.46 3 33.1580 120 33.1562 0 2.465 0 31.0 0 59.5 0 2.48 0 5.7 0.0 0.0 0.0 475 134.0 6.8196 55.2 2.43 2 33.1679 121 33.1783 0 2.525 0 31.3 0 59.5 0 2.51 0 6.3 0.0 0.0 0.0 474 137.2 6.7415 54.7 2.35 1 33.2073 120 33.1732 4 2.436 0 31.2 0 59.1 0 2.51 0 5.8 0.0 0.0 0.0