*2014/11/20 09:53:44.01 *IOS HEADER VERSION 1.10 2011/10/26 2011/10/26 *FILE START TIME : UTC 2003/02/26 23:21:30.000 TIME INCREMENT : 0 0 0 0.416667E-01 0 ! (day hr min sec ms) NUMBER OF RECORDS : 20 DATA DESCRIPTION : Bottle:Rosette:Up:Stop + CTD:Up FILE TYPE : ASCII NUMBER OF CHANNELS : 22 $TABLE: CHANNELS ! No Name Units Minimum Maximum !--- ---------------------------- --------------- -------------- -------------- 1 Sample_Number n/a 166 185 2 Pressure decibar 0.2 430.8 3 Temperature:Primary 'deg C (ITS90)' 5.6456 9.2885 4 Transmissivity %/metre 36.9 60.9 5 Fluorescence:URU:Seapoint mg/m^3 0.91E-01 7.123 6 PAR uE/m^2/sec 2.2 633.9 7 PAR:Reference uE/m^2/sec 1094.1 2041.1 8 Bottle_Number n/a 1 20 9 Salinity:T0:C0 PSS-78 31.9078 34.0496 10 Number_of_bin_records n/a 73 73 11 Salinity:Bottle PSS-78 33.9072 34.0424 12 Flag:Salinity:Bottle n/a 13 Chlorophyll:Extracted mg/m^3 0.65 7.15 14 Flag:Chlorophyll:Extracted n/a 15 Nitrate_plus_Nitrite umol/L 3.7 38.7 16 Flag:Nitrate_plus_Nitrite n/a 17 Silicate umol/L 6.5 71.5 18 Flag:Silicate n/a 19 Phosphate umol/L 0.68 2.88 20 Flag:Phosphate n/a 21 Ammonium umol/L 0.4E-01 0.5E-01 22 Flag:Ammonium n/a $END $TABLE: CHANNEL DETAIL ! No Pad Start Width Format Type Decimal_Places !--- ---- ----- ----- ------ ---- -------------- 1 -99 ' ' 5 I I ' ' 2 -99 ' ' 7 F ' ' 1 3 -99 ' ' 9 F ' ' 4 4 -99 ' ' 6 F ' ' 1 5 -99 ' ' 8 F ' ' 3 6 -99 ' ' 7 F ' ' 1 7 -99 ' ' 7 F ' ' 1 8 -99 ' ' 3 I I 0 9 -99 ' ' 9 F ' ' 4 10 -99 ' ' 5 I I 0 11 -99 ' ' ' ' F9.4 R4 ' ' 12 0 ' ' 2 NQ C ' ' 13 -99 ' ' ' ' F7.2 R4 ' ' 14 0 ' ' 2 NQ C ' ' 15 -99 ' ' ' ' F6.1 R4 ' ' 16 0 ' ' 2 NQ C ' ' 17 -99 ' ' ' ' F6.1 R4 ' ' 18 0 ' ' 2 NQ C ' ' 19 -99 ' ' ' ' F7.2 R4 ' ' 20 0 ' ' 2 NQ C ' ' 21 -99 ' ' ' ' F7.2 R4 ' ' 22 0 ' ' 2 NQ C ' ' $END $REMARKS Flag channels initialized with zeros. Non-zero values have the following significance: -------------------------------------------------------------------------------------- 1 = Sample for this measurement was drawn from water bottle but not analyzed (not normally used). 2 = Acceptable measurement (not normally used). 3 = Questionable measurement (no problem observed in sampling or analysis, but value is not trusted, nonetheless; includes outlyers). 4 = Bad measurement (known problem with sampling or analysis, but not serious enough to completely discard the value). 5 = Not reported (lost sample; unredeemably bad measurement). 6 = Mean of replicate measurements. 7 = Manual chromatographic peak measurement. 8 = Irregular digital chromatographic peak integration. 9 = Sample not drawn for this measurement from this bottle (not normally used). -------------------------------------------------------------------------------------- $END *ADMINISTRATION MISSION : 2003-02 AGENCY : IOS, Ocean Science and Productivity, Sidney, BC COUNTRY : Canada PROJECT : Phytoplankton SCIENTIST : Pena A. PLATFORM : John P. Tully *LOCATION GEOGRAPHIC AREA : West Coast Vancouver Island STATION : BIO1 EVENT NUMBER : 36 LATITUDE : 48 32.10000 N ! (deg min) LONGITUDE : 126 11.76000 W ! (deg min) WATER DEPTH : 444 *INSTRUMENT TYPE : Sea-Bird CTD MODEL : SBE-911plus SERIAL NUMBER : 0550 $TABLE: SENSORS ! Name Abs Depth Serial No ! ------------------------- -------------- ---------- temperature:primary ' ' 2095 conductivity:primary ' ' 2280 pressure ' ' 75636 temperature:secondary ' ' 2710 conductivity:secondary ' ' 2278 Fluorometer ' ' Seapoint Oxygen:SBE ' ' 0047 transmissometer:primary ' ' 498DR irradiance ' ' primary surface ' ' 'degrees = 0.0' $END $REMARKS SOFTWARE VERSION SEASAVE WIN32 V 5.27C Comments from secondary file: H:\CTD\2003-02\Merge\2003-02-0036.clnoxy ---------------------------------------------------------------------- Dissolved oxygen concentration determined using an automated titration system consisting of a Brinkman dosimat (model 665) and a PC 900 Colorimeter. $END *HISTORY $TABLE: PROGRAMS ! Name Vers Date Time Recs In Recs Out ! ------------------------ ------ ---------- -------- --------- --------- SBE_IOS 2.5 2003/05/27 08:56:30 1460 1460 CLEAN 4.2 2003/05/27 08:57:54 ? ? CALIB 11.0 2003/06/24 14:51:15 1460 1460 REMOVECH 6.0 2003/06/24 14:51:57 1460 1460 HDREDIT2 1.6 2003/06/24 14:52:13 ? ? BINAVE 4.0.1 2003/07/17 09:46:38 1460 20 ADDSAMP 3.4 2003/07/17 11:22:34 20 20 MERGE 2.9 2003/07/18 10:54:50 20 20 MERGE 2.9 2003/07/18 11:05:37 20 20 MERGE 2.9 2003/07/21 11:44:22 20 20 HDREDIT2 1.6 2003/07/21 11:52:20 ? ? CLEAN 4.3 2003/07/21 12:00:59 20 20 MERGE 3.1 2003/12/12 14:46:42 20 20 CLEAN 4.5 2003/12/15 14:16:01 20 20 SORT 3.4.1 2004/04/14 16:45:43 20 20 HDREDIT2 2.1 2004/05/26 13:20:29 ? ? CHANGE_FLAGS 1.0 2013/07/16 11:47:14 20 20 CHANGE_CTD_CHANNEL_NAMES 1.0 2013/12/16 15:27:26 20 20 CHANGE_FLAGS 2.0 2014/11/20 09:53:44 20 20 $END $REMARKS CLEAN functions: - Set event to last 4 characters of file name -The following CALIB parameters were used: Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = Q:\CTD\2003-02\doc\2003-02-rcal2.ccf Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 14 Salinity:T0:C0 PSS-78 10 0.3000000E-02 0.1000000E+01 -The following CHANNEL(S) were removed from file. Scan_Number Temperature:Secondary Conductivity:Primary Conductivity:Secondary Descent_Rate Status:Pump Salinity:T1:C1 Flag -The following BINAVE parameters were used: Bin channel = Bottle_Number Averaging interval = 1.00 Minimum bin value = 0.000 Bin value was used Interpolated values were NOT used for empty bins Channel 'NUMBER_OF_BIN_RECORDS' was added to file. -The following ADDSAMP parameters were used: Sample Number Lookup File: H:\CTD\2003-02\Merge\addsamp.dat Bottle Channel Name: Bottle_Number -The following MERGE parameters were used: Merge Channel: Sample_Number Merge Scheme Used: Interweave Records from Both Files Overlap Scheme Used: Keep Primary Primary Channels to Include: ALL Secondary Channels to Include: Oxygen:Dissolved, Flag:Oxygen:Dissolved Primary file : H:\CTD\2003-02\Merge\2003-02-0036.sam Secondary file: H:\CTD\2003-02\Merge\2003-02-0036.clnoxy Comments from secondary file: H:\CTD\2003-02\Merge\2003-02-0036.clnoxy ---------------------------------------------------------------------- C.H. Culbertson's paper on Dissolved Oxygen in the 'Woce Hydrographic Program Operations and Methods - July 1991' CLEAN functions: - Reset #RECS, MIN & MAX values in header. -The following MERGE parameters were used: Merge Channel: Sample_Number Merge Scheme Used: Interweave Records from Both Files Overlap Scheme Used: Keep Primary Primary Channels to Include: ALL Secondary Channels to Include: Salinity:bottle, Data Quality Primary file : H:\CTD\2003-02\merge\2003-02-0036.mrg Secondary file: H:\CTD\2003-02\merge\2003-02-0036.sal -The following MERGE parameters were used: Merge Channel: Sample_Number Merge Scheme Used: Interweave Records from Both Files Overlap Scheme Used: Keep Primary Primary Channels to Include: ALL Secondary Channels to Include: Chlorophyll:Extracted [mg/m^3], Flag:Chlorophyll:Extracted [ ] Primary file : H:\CTD\2003-02\Merge\2003-02-0036.mrg2 Secondary file: H:\CTD\2003-02\Merge\2003-02-0036.ios CLEAN functions: - Reset #RECS, MIN & MAX values in header. - Change Pad Value to -99 in All Channels. - Set channel name post-colon letters to upper case. - Remove Sea-Bird comments from the header. -The following MERGE parameters were used: Merge Channel: Sample_Number Merge Scheme Used: Interweave Records from Both Files Overlap Scheme Used: Keep Primary Primary Channels to Include: ALL Secondary Channels to Include: Nitrate_plus_Nitrite, Flag:Nitrate_plus_Nitrite, Silicate, Flag:Silicate, Phosphate, Flag:Phosphate, Ammonium, Flag:Ammonium Primary file : H:\Data Processing\2003-02\2003-02-0036.che Secondary file: H:\Data Processing\2003-02\2003-02-0036.nut CLEAN functions: - Reset #RECS, MIN & MAX values in header. - Delete Empty Channels: 0 deleted. -The following SORT parameters were used. Sorted by channel: Pressure Pressure channel sorted according to values in sort channel $END *COMMENTS Analysis methods: ----------------- Salinity samples are collected in glass bottles and analyzed on Guildline model 8410 Portasal Salinometers which are standardized with IAPSO standard seawater. Oxygen samples are analyzed on an automated Winkler titration system following the procedures of Carpenter (1965). A Brinkmann model 665 Dosimat and model PC910 Colorimeter is controlled by Visual-Basic program to titrate the oxygen samples. Nutrient samples are analyzed fresh on board using a Technicon AAII auto- analyzer following methods described in Barwell-Clarke and Whitney (1996). Chlorophyll samples are collected in duplicate in calibrated polycarbonate bottles (~330ml), then filtered onto 25mm MFS GF/75 filters at <70mmHg vacuum. The filters are placed in glass scintillation vials and immediately frozen at -20ºC until analysis. The chlorophyll is extracted in 10 ml of 90% acetone for 24h at -20ºC, then brought to room temperature and the extract is decanted and measured using a Turner Designs 10-AU-005-CE fluorometer, which has been calibrated with solutions of commercially prepared chlorophyll. References: 1. Carpenter, J.H. 1965. The Chesapeake Bay Institute Technique for the Winkler Dissolved Oxygen Method. Limmnol. & Oceanogr., 10: 141-143. 2. J. Barwell-Clarke and F. Whitney. 1996. Institute of Ocean Sciences Nutrient Methods and Analysis. Canadian Technical Report of Hydrography and Ocean Sciences, No. 182, 43 pp. *CALIBRATION $TABLE: CORRECTED CHANNELS ! Name Units Fmla Pad Coefficients ! ---------------- -------- ---- ------ ------------ Salinity:T0:C0 PSS-78 10 -99 () (0.3E-02 1) $END !-1-- --2--- ---3---- --4-- ---5--- --6--- --7--- 8- ---9---- -10- ---11--- - --13-- - --15- - --17- - --19-- - --21-- - !Samp Pressu Temperat Trans Fluores PAR PAR: Bo Salinity Numb Salinity F Chloro F Nitra F Silic F Phosph F Ammoni F !le_ re ure: missi cence: Refere tt :T0:C0 er_o :Bottle l phyll: l te_ l ate l ate l um l !Numb Primary vity URU: nce ~u ~bin ~ Extrac ~ plus_ ~ ~ ~ ~ !er Seapoin mb _rec l ted e Nitri t t t u ! t er ords e d te e e e m !---- ------ -------- ----- ------- ------ ------ -- -------- ---- -------- - ------ - ----- - ----- - ------ - ------ - *END OF HEADER 185 0.2 9.2408 37.1 3.972 633.9 1897.6 20 31.9078 73 -99.0000 0 7.03 6 3.7 0 7.6 0 0.72 0 0.05 0 184 4.4 9.0796 36.9 6.596 113.8 1887.5 19 31.9504 73 -99.0000 0 7.15 6 3.8 0 8.5 0 0.68 0 0.04 0 183 10.5 9.0598 40.3 7.123 31.6 1911.4 18 32.0130 73 -99.0000 0 6.49 3 4.6 0 7.5 0 0.75 0 0.05 0 182 14.8 9.2450 49.7 2.833 13.3 1936.9 17 32.1705 73 -99.0000 0 2.44 6 -99.0 0 -99.0 0 -99.00 0 -99.00 0 181 20.6 9.1947 54.7 1.951 7.8 1942.4 16 32.2230 73 -99.0000 0 0.93 6 6.7 0 7.5 0 0.88 0 0.05 0 180 25.4 9.1825 55.0 1.797 5.8 1931.4 15 32.2268 73 -99.0000 0 0.98 6 -99.0 0 -99.0 0 -99.00 0 -99.00 0 179 30.6 9.1788 55.1 1.804 4.5 1898.0 14 32.2286 73 -99.0000 0 0.85 6 6.4 0 7.3 0 0.87 0 0.04 0 178 34.9 9.2513 56.2 1.571 3.7 1901.7 13 32.2617 73 -99.0000 0 0.65 6 -99.0 0 -99.0 0 -99.00 0 -99.00 0 177 39.7 9.2885 55.9 1.462 3.1 1918.8 12 32.2716 73 -99.0000 0 0.74 6 6.5 0 6.7 0 0.87 0 0.04 0 176 49.9 9.2471 56.1 1.536 2.6 1922.6 11 32.2743 73 -99.0000 0 0.69 6 6.6 0 6.5 0 0.86 0 0.04 0 175 76.3 9.1782 58.0 0.958 2.3 1921.3 10 32.2952 73 -99.0000 0 -99.00 0 7.3 0 7.2 0 0.86 0 -99.00 0 174 99.1 7.8589 60.5 0.128 2.2 1937.8 9 32.9048 73 -99.0000 0 -99.00 0 18.7 0 19.8 0 1.53 0 -99.00 0 173 124.3 8.0375 60.1 0.099 2.2 1957.6 8 33.3854 73 -99.0000 0 -99.00 0 24.8 0 29.0 0 1.86 0 -99.00 0 172 151.2 7.8025 58.3 0.097 2.2 1975.3 7 33.6367 73 -99.0000 0 -99.00 0 28.0 0 35.0 0 2.05 0 -99.00 0 171 177.1 7.7508 58.4 0.097 2.2 1994.8 6 33.8052 73 -99.0000 0 -99.00 0 30.2 0 40.1 0 2.32 0 -99.00 0 170 200.4 7.4900 57.6 0.091 2.2 1094.1 5 33.9054 73 33.9072 0 -99.00 0 32.3 0 45.1 0 2.41 0 -99.00 0 169 249.8 7.1192 60.7 0.099 2.2 1952.4 4 33.9633 73 33.9645 0 -99.00 0 33.4 0 48.7 0 2.37 0 -99.00 0 168 301.0 6.6984 60.9 0.092 2.2 1999.3 3 34.0055 73 34.0069 0 -99.00 0 34.2 0 54.3 0 2.57 0 -99.00 0 167 401.1 5.8269 59.3 0.096 2.2 2015.9 2 34.0363 73 34.0357 0 -99.00 0 38.7 0 68.5 0 2.84 0 -99.00 0 166 430.8 5.6456 59.1 0.096 2.2 2041.1 1 34.0496 73 34.0424 0 -99.00 0 37.8 0 71.5 0 2.88 0 -99.00 0