*2014/11/20 09:53:37.49 *IOS HEADER VERSION 1.10 2011/10/26 2011/10/26 *FILE START TIME : UTC 2002/09/25 01:53:13.000 TIME INCREMENT : 0 0 0 0.416667E-01 0 ! (day hr min sec ms) NUMBER OF RECORDS : 6 DATA DESCRIPTION : Bottle:Rosette:Up:Stop + CTD:Up FILE TYPE : ASCII NUMBER OF CHANNELS : 9 $TABLE: CHANNELS ! No Name Units Minimum Maximum !--- --------------------------- --------------- -------------- -------------- 1 Sample_Number n/a 1 6 2 Pressure decibar 1.1 59.5 3 Temperature:Primary 'deg C (ITS90)' 8.3203 15.7129 4 Transmissivity %/metre 23.1 59.4 5 Fluorescence:URU:Seapoint mg/m^3 0.141 2.069 6 Salinity:T0:C0 PSS-78 25.3869 32.5702 7 Bottle_Number n/a 1 6 8 Oxygen:Dissolved mL/L 0.429 8.252 9 Flag:Oxygen:Dissolved n/a $END $TABLE: CHANNEL DETAIL ! No Pad Start Width Format Type Decimal_Places !--- ---- ----- ----- ------ ---- -------------- 1 -99 ' ' 5 I I ' ' 2 -99 ' ' 7 F ' ' 1 3 -99 ' ' 9 F ' ' 4 4 -99 ' ' 7 F ' ' 1 5 -99 ' ' 8 F ' ' 3 6 -99 ' ' 9 F ' ' 4 7 -99 ' ' 3 I I 0 8 -99 ' ' 8 F ' ' 3 9 -99 ' ' 2 NQ C ' ' $END $REMARKS Flag channels initialized with zeros. Non-zero values have the following significance: -------------------------------------------------------------------------------------- 1 = Sample for this measurement was drawn from water bottle but not analyzed (not normally used). 2 = Acceptable measurement (not normally used). 3 = Questionable measurement (no problem observed in sampling or analysis, but value is not trusted, nonetheless; includes outlyers). 4 = Bad measurement (known problem with sampling or analysis, but not serious enough to completely discard the value). 5 = Not reported (lost sample; unredeemably bad measurement). 6 = Mean of replicate measurements. 7 = Manual chromatographic peak measurement. 8 = Irregular digital chromatographic peak integration. 9 = Sample not drawn for this measurement from this bottle (not normally used). -------------------------------------------------------------------------------------- $END *ADMINISTRATION MISSION : 2002-34 AGENCY : IOS, Ocean Science and Productivity, Sidney, BC COUNTRY : Canada PROJECT : Covariability, LaP,Eff,JdeF SCIENTIST : Juhasz T. PLATFORM : John P. Tully *LOCATION GEOGRAPHIC AREA : WCVI/JdeF STATION : EFF2 EVENT NUMBER : 1 LATITUDE : 49 4.98000 N ! (deg min) LONGITUDE : 125 10.31000 W ! (deg min) WATER DEPTH : 70 *INSTRUMENT TYPE : Sea-Bird CTD MODEL : SBE-911plus SERIAL NUMBER : 0550 $TABLE: SENSORS ! Name Abs Depth Serial No ! ------------------------- -------------- ---------- temperature:primary ' ' 2371 conductivity:primary ' ' 2399 pressure ' ' 75636 temperature:secondary ' ' 2663 conductivity:secondary ' ' 2424 Fluorometer ' ' Seapoint transmissometer:primary ' ' 498DR irradiance ' ' 4601 surface ' ' 'degrees = 0.0' $END $REMARKS SOFTWARE VERSION SEASAVE WIN32 V 5.26D Comments from secondary file: D:\Data\2002\2002-34\2002-34-0001.dox ------------------------------------------------------------------- Dissolved oxygen concentration determined using an automated titration system consisting of a Brinkman dosimat (model 665) and a PC 900 Colorimeter. $END *HISTORY $TABLE: PROGRAMS ! Name Vers Date Time Recs In Recs Out ! ------------------------ ------ ---------- -------- --------- --------- SBE_IOS 2.2 2002/12/16 17:59:33 726 726 CLEAN 3.9 2002/12/17 12:56:09 ? ? BINAVE 4.0.1 2002/12/19 16:02:19 726 6 CALIB 10.4 2002/12/19 16:02:33 6 6 REMOVECH 6.0 2002/12/19 16:03:58 6 6 REORDER 1.2.1 2003/01/02 11:34:48 ? ? HDREDIT2 1.5 2003/01/02 11:36:16 ? ? ADDSAMP 3.2 2003/01/08 14:45:32 6 6 MERGE 2.8 2003/01/08 14:46:20 6 6 ADDCHANS 1.0 2003/01/09 09:10:36 ? ? ADDCHANS 1.0 2003/01/09 16:03:25 ? ? REMOVECH 6.0 2003/01/10 09:23:46 6 6 HDREDIT2 1.51 2003/01/10 16:07:17 ? ? CLEAN 4.0 2003/01/10 16:07:22 6 6 SORT 3.4.1 2004/04/14 16:30:27 6 6 CALIB 11.4 2004/12/22 10:30:10 6 6 CHANGE_FLAGS 1.0 2013/07/29 14:29:05 6 6 CHANGE_CTD_CHANNEL_NAMES 1.0 2013/12/16 15:26:55 6 6 CHANGE_FLAGS 2.0 2014/11/20 09:53:37 6 6 $END $REMARKS CLEAN functions: - Set event to last 4 characters of file name -The following BINAVE parameters were used: Bin channel = Bottle_Number Averaging interval = 1.0 Minimum bin value = 0.000 Average value was used Interpolated values were NOT used for empty bins Channel 'NUMBER_OF_BIN_RECORDS' was added to file. -The following CALIB parameters were used: Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = Q:\CTD\2002-34\CTD\2002-34_rcal.ccf Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 10 Salinity:T0:C0 PSS-78 10 -0.2600000E-02 0.1000000E+01 11 Salinity:T1:C1 PSS-78 10 -0.5600000E-02 0.1000000E+01 -The following CHANNEL(S) were removed from file. Scan_Number Temperature:Secondary Conductivity:Primary Conductivity:Secondary Irradiance (PAR) Salinity:T1:C1 Flag -The following ADDSAMP parameters were used: Sample Number Lookup File: D:\Data\2002\2002-34\numbers.csv Bottle Channel Name: Bottle_Number -The following MERGE parameters were used: Merge Channel: Sample_Number Merge Scheme Used: Add Secondary to Primary Overlap Scheme Used: Keep Primary Primary Channels to Include: Pressure, Temperature:Primary, Transmissivity, Fluorescence:URU:Seapoint, Salinity:T0:C0, Bottle_Number Secondary Channels to Include: Oxygen:Dissolved Primary file : D:\Data\2002\2002-34\2002-34-0001.sam Secondary file: D:\Data\2002\2002-34\2002-34-0001.dox Comments from secondary file: D:\Data\2002\2002-34\2002-34-0001.dox ------------------------------------------------------------------- C.H. Culbertson's paper on Dissolved Oxygen in the 'Woce Hydrographic Program Operations and Methods - July 1991' -The following OXYCALC parameters were used Blank = 0.004 Sodium Thiosulfate concentration = 0.718 Volume of iodate standard (cm**3) = 10.10 Enter Normalitity of iodate standard = 0.01013508 -The following CHANNEL(S) were removed from file. Flag:Oxygen:Dissolved CLEAN functions: - Reset #RECS, MIN & MAX values in header. - Change Pad Value to -99 in All Channels. - Set channel name post-colon letters to upper case. -The following SORT parameters were used. Sorted by channel: Pressure Pressure channel sorted according to values in sort channel -The following CALIB parameters were used: Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = Q:\Cruise_Data\RICKER recal\2002-34\2002-34-RECAL2.CCF Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 6 Salinity:T0:C0 PSS-78 10 0.5800000E-02 0.1000000E+01 $END *COMMENTS SBE HEADER Sea-Bird SBE 9 Data File: FileName = D:\data\2002-34\2002-34-001.dat Software Version Seasave Win32 V 5.26d Temperature SN = 2371 Conductivity SN = 2399 Number of Bytes Per Scan = 30 Number of Voltage Words = 4 Number of Scans Averaged by the Deck Unit = 1 System UpLoad Time = Sep 25 2002 01:53:13 NMEA Latitude = 49 04.98 N NMEA Longitude = 125 10.31 W NMEA UTC (Time) = 01:52:48 Store Lat/Lon Data = Add to Header Only Ship: Tully Cruise: 2002-34 Station: EFF2 Depth: 70 Latitude: Longitude: # nquan = 13 # nvalues = 726 # units = specified # name 0 = scan: Scan Count # name 1 = prDM: Pressure, Digiquartz [db] # name 2 = t090C: Temperature [ITS-90, deg C] # name 3 = t190C: Temperature, 2 [ITS-90, deg C] # name 4 = c0S/m: Conductivity [S/m] # name 5 = c1S/m: Conductivity, 2 [S/m] # name 6 = xmiss: Beam Transmission, Chelsea/Seatech/Wetlab CStar [%] # name 7 = flSP: Fluorescence, Seapoint # name 8 = par: PAR/Irradiance, Biospherical/Licor # name 9 = sal00: Salinity [PSU] # name 10 = sal11: Salinity, 2 [PSU] # name 11 = nbf: Bottles Fired # name 12 = flag: 0.000e+00 # interval = seconds: 0.0416667 # start_time = Sep 25 2002 01:53:13 # sensor 0 = Frequency 0 temperature, primary, 2371, 16-Apr-02s # sensor 1 = Frequency 1 conductivity, primary, 2399, 16-Apr-02s, cpcor = -9.5 700e-08 # sensor 2 = Frequency 2 pressure, 75636, 04-06-1999 # sensor 3 = Frequency 3 temperature, secondary, 2663, 18-Apr-02s # sensor 4 = Frequency 4 conductivity, secondary, 2424, 16-Apr-02s, cpcor = -9 .5700e-08 # sensor 5 = Extrnl Volt 0 Fluorometer, Seapoint # sensor 6 = Extrnl Volt 2 transmissometer, primary, 498DR, 2002-08-23 # sensor 7 = Extrnl Volt 4 irradiance (PAR), 4601, 2002-07-22 # sensor 8 = Extrnl Volt 7 surface irradiance (SPAR), degrees = 0.0 # datcnv_date = Dec 16 2002 16:58:26, 5.25b # datcnv_in = Q:\CTD\2002-34\CTD\2002-34-0001.dat Q:\CTD\2002-34\CTD\2002-34-000 1.con # datcnv_bottle_scan_range_source = scans marked with bottle confirm bit, -2, 5 END* Analysis methods: ----------------- Salinity samples are collected in glass bottles and analyzed on Guildline model 8410 Portasal Salinometers which are standardized with IAPSO standard seawater. Oxygen samples are analyzed on an automated Winkler titration system following the procedures of Carpenter (1965). A Brinkmann model 665 Dosimat and model PC910 Colorimeter is controlled by Visual-Basic program to titrate the oxygen samples. Nutrient samples are analyzed frozen using a Technicon AAII autoanalyzer following methods described in Barwell-Clarke and Whitney (1996). Chlorophyll samples are collected in duplicate in calibrated polycarbonate bottles (~330ml), then filtered onto 25mm MFS GF/75 filters at <70mmHg vacuum. The filters are placed in glass scintillation vials and immediately frozen at -20ºC until analysis. The chlorophyll is extracted in 10 ml of 90% acetone for 24h at -20ºC, then brought to room temperature and the extract is decanted and measured using a Turner Designs 10-AU-005-CE fluorometer, which has been calibrated with solutions of commercially prepared chlorophyll. References: 1. Carpenter, J.H. 1965. The Chesapeake Bay Institute Technique for the Winkler Dissolved Oxygen Method. Limmnol. & Oceanogr., 10: 141-143. 2. J. Barwell-Clarke and F. Whitney. 1996. Institute of Ocean Sciences utrient Methods and Analysis. Canadian Technical Report of Hydrography and Ocean Sciences, No. 182, 43 pp. *CALIBRATION $TABLE: CORRECTED CHANNELS ! Name Units Fmla Pad Coefficients ! ---------------- -------- ---- ------ ------------ Salinity:T0:C0 PSS-78 10 -9.9 () (-0.26E-02 1) Salinity:T1:C1 PSS-78 10 -9.9 () (-0.56E-02 1) Salinity:T0:C0 PSS-78 10 -99 () (0.58E-02 1) $END !-1-- --2--- ---3---- --4--- ---5--- ---6---- 7- ---8--- 9 !Samp Pressu Temperat Transm Fluores Salinity Bo Oxygen: F !le_ re ure: issivi cence: :T0:C0 tt Dissolv l !Numb Primary ty URU: ~u ed ~ !er Seapoin mb e ! t er d !---- ------ -------- ------ ------- -------- -- ------- - *END OF HEADER 6 1.1 15.7129 23.1 2.069 25.3869 6 8.252 0 5 10.3 10.3245 58.4 0.458 31.8723 5 4.639 0 4 20.2 9.5830 59.4 0.192 32.0778 4 3.125 0 3 29.9 9.2364 58.4 0.155 32.1925 3 2.440 0 2 50.4 8.3781 57.0 0.144 32.5168 2 0.429 0 1 59.5 8.3203 54.2 0.141 32.5702 1 0.552 0