*2024/04/15 11:00:39.88 *IOS HEADER VERSION 2.0 2016/04/28 2016/06/13 IVF16 *FILE START TIME : UTC 2002/09/02 06:46:49.000 TIME INCREMENT : 0 0 0 0.416667E-01 0 ! (day hr min sec ms) NUMBER OF RECORDS : 17 DATA DESCRIPTION : Bottle:Rosette:Up:Stop + CTD:Up FILE TYPE : ASCII NUMBER OF CHANNELS : 20 $TABLE: CHANNELS ! No Name Units Minimum Maximum !--- ---------------------------- --------------- -------------- -------------- 1 Sample_Number n/a 706 722 2 Pressure decibar 0.9 532.8 3 Temperature:Primary 'deg C (ITS90)' 8.9837 18.8226 4 Transmissivity %/metre 44.3 57.4 5 Fluorescence:URU:Seapoint mg/m^3 0.8E-01 4.104 6 Oxygen:Dissolved:SBE mL/L 1.095 7.598 7 Salinity:T0:C0 PSS-78 21.3769 31.1149 8 Bottle_Number n/a 1 17 9 Oxygen:Dissolved mL/L 1.02 7.17 10 Flag:Oxygen:Dissolved n/a 11 Salinity:Bottle PSS-78 31.0522 31.1045 12 Flag:Salinity:Bottle n/a 13 Chlorophyll:Extracted mg/m^3 0.64 1.91 14 Flag:Chlorophyll:Extracted n/a 15 Nitrate_plus_Nitrite umol/L 0 36.1 16 Flag:Nitrate_plus_Nitrite n/a 17 Silicate umol/L 11.9 82.5 18 Flag:Silicate n/a 19 Phosphate umol/L 0.22 3.46 20 Flag:Phosphate n/a $END $TABLE: CHANNEL DETAIL ! No Pad Start Width Format Type Decimal_Places !--- ---- ----- ----- ------ ---- -------------- 1 -99 ' ' 5 I I ' ' 2 -99 ' ' 7 F ' ' 1 3 -99 ' ' 9 F ' ' 4 4 -99 ' ' 7 F ' ' 1 5 -99 ' ' 8 F ' ' 3 6 -99 ' ' 8 F ' ' 3 7 -99 ' ' 9 F ' ' 4 8 -99 ' ' 3 I I ' ' 9 -99 ' ' 8 F ' ' 3 10 -99 ' ' 2 NQ C ' ' 11 -99 ' ' 9 F R4 4 12 -99 ' ' 2 NQ C ' ' 13 -99 ' ' 7 F R4 2 14 -99 ' ' 2 NQ C ' ' 15 -99 ' ' 6 F R4 1 16 -99 ' ' 2 NQ C ' ' 17 -99 ' ' 6 F R4 1 18 -99 ' ' 2 NQ C ' ' 19 -99 ' ' 7 F R4 2 20 -99 ' ' 2 NQ C ' ' $END $REMARKS Quality flags have the following significance: ---------------------------------------------------------------------------------- 0 = Acceptable measurement with no header comment 1 = Sample for this measurement was collected but not analyzed. Sample lost. 2 = Acceptable measurement with header comment 3 = Questionable measurement (Probably Good) 4 = Poor measurement (Probably Bad) 5 = Measurement not reported (Bad) 6 = Mean of replicate measurements 7 = Manual chromatographic peak measurement 8 = Irregular digital chromatographic peak integration 9 = Sample was planned for this measurement from this bottle but was not collected ---------------------------------------------------------------------------------- $END *ADMINISTRATION MISSION : 2002-28 AGENCY : IOS, Ocean Science and Productivity. Sidney, BC COUNTRY : Canada PROJECT : BC Inlets SCIENTIST : Stucchi D. PLATFORM : Vector *LOCATION GEOGRAPHIC AREA : BC Inlets STATION : JE7 EVENT NUMBER : 55 LATITUDE : 50 2.50000 N ! (deg min) LONGITUDE : 123 51.21000 W ! (deg min) WATER DEPTH : 558 *INSTRUMENT TYPE : Sea-Bird CTD MODEL : SBE-911plus SERIAL NUMBER : 0585 LOCATION : Mid-ship ! custom item $TABLE: SENSORS ! Name Abs Depth Serial No ! ------------------------- -------------- ---------- temperature:primary ' ' 2023 conductivity:primary ' ' 1763 pressure ' ' 77511 temperature:secondary ' ' 2106 conductivity:secondary ' ' 1764 Fluorometer ' ' Seapoint transmissometer:primary ' ' 333DR Oxygen:SBE ' ' 0047 $END $REMARKS SOFTWARE VERSION SEASAVE WIN32 V 5.26C Comments from secondary file: D:\Data\2002\2002-28\2002-28-0055.dox ------------------------------------------------------------------- Dissolved oxygen concentration determined using an automated titration system consisting of a Brinkman dosimat (model 665) and a PC 900 Colorimeter. $END *HISTORY $TABLE: PROGRAMS ! Name Vers Date Time Recs In Recs Out ! ------------------------ ------ ---------- -------- --------- --------- SBE_IOS 2.2 2002/12/12 15:10:42 2057 2057 BINAVE 4.0.1 2002/12/16 13:03:06 2057 17 CALIB 10.4 2003/01/16 12:14:15 17 17 REMOVECH 6.0 2003/01/16 12:14:52 17 17 REORDER 1.2.1 2003/01/16 12:15:20 ? ? ADDSAMP 3.2 2003/01/27 13:42:22 17 17 MERGE 2.8 2003/01/27 14:09:22 17 17 ADDCHANS 1.0 2003/01/27 14:18:33 ? ? CLEAN 4.1 2003/01/27 14:18:59 17 17 MERGE 2.8 2003/01/27 14:38:38 17 17 ADDCHANS 1.0 2003/01/27 14:48:03 ? ? MERGE 2.8 2003/01/27 15:57:09 17 17 MERGE 2.8 2003/01/27 16:57:15 17 17 CALIB 11.1 2003/08/12 16:18:38 17 17 SORT 3.4.1 2004/04/14 16:36:54 17 17 CHANGE_CTD_CHANNEL_NAMES 1.0 2013/12/16 15:26:37 17 17 CHANGE_FLAGS 2.0 2014/11/20 09:53:31 17 17 HDREDIT2 3.2 2021/11/25 13:16:31 ? ? CLEAN 5.3 2024/04/15 10:41:03 17 17 CLEAN 5.3 2024/04/15 10:52:53 17 17 CLEAN 5.3 2024/04/15 10:55:29 17 17 CLEAN 5.3 2024/04/15 10:56:54 17 17 CLEAN 5.3 2024/04/15 10:57:47 17 17 CLEAN 5.3 2024/04/15 10:58:18 17 17 CLEAN 5.3 2024/04/15 10:58:45 17 17 HDREDIT2 3.2 2024/04/15 11:00:39 ? ? $END $REMARKS -The following BINAVE parameters were used: Bin channel = Bottle_Number Averaging interval = 1.0 Minimum bin value = 0.000 Average value was used Interpolated values were NOT used for empty bins Channel 'NUMBER_OF_BIN_RECORDS' was added to file. -The following CALIB parameters were used: Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = Q:\CTD\2002-28\2002-28_rcal.ccf Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 9 Oxygen:Dissolved:SBE mL/L 10 0.9300000E-01 0.1000000E+01 -The following CHANNEL(S) were removed from file. Scan_Number Temperature:Secondary Conductivity:Primary Conductivity:Secondary Salinity:T1:C1 Flag -The following ADDSAMP parameters were used: Sample Number Lookup File: D:\Data\2002\2002-28\numbers.csv Bottle Channel Name: Bottle_Number -The following MERGE parameters were used: Merge Channel: Sample_Number Merge Scheme Used: Add Secondary to Primary Overlap Scheme Used: Keep Primary Primary Channels to Include: Pressure, Temperature:Primary, Transmissivity, Fluorescence:URU:Seapoint, Oxygen:Dissolved:SBE, Salinity:T0:C0, Bottle_Number Secondary Channels to Include: Oxygen:Dissolved Primary file : D:\Data\2002\2002-28\2002-28-0055.sam Secondary file: D:\Data\2002\2002-28\2002-28-0055.dox Comments from secondary file: D:\Data\2002\2002-28\2002-28-0055.dox ------------------------------------------------------------------- C.H. Culbertson's paper on Dissolved Oxygen in the 'Woce Hydrographic Program Operations and Methods - July 1991' -The following OXYCALC parameters were used Blank = 0.004 Sodium Thiosulfate concentration = 0.718 Volume of iodate standard (cm**3) = 10.02 Enter Normalitity of iodate standard = 0.01012766 CLEAN functions: - Reset #RECS, MIN & MAX values in header. - Remove Sea-Bird comments from the header. -The following MERGE parameters were used: Merge Channel: Sample_Number Merge Scheme Used: Add Secondary to Primary Overlap Scheme Used: Keep Primary Primary Channels to Include: Pressure, Temperature:Primary, Transmissivity, Fluorescence:URU:Seapoint, Oxygen:Dissolved:SBE, Salinity:T0:C0, Bottle_Number, Oxygen:Dissolved, Flag:Oxygen:Dissolved Secondary Channels to Include: Salinity:Bottle Primary file : D:\Data\2002\2002-28\2002-28-0055.cln Secondary file: D:\Data\2002\2002-28\2002-28-0055.sal -The following MERGE parameters were used: Merge Channel: Sample_Number Merge Scheme Used: Add Secondary to Primary Overlap Scheme Used: Keep Primary Primary Channels to Include: Pressure, Temperature:Primary, Transmissivity, Fluorescence:URU:Seapoint, Oxygen:Dissolved:SBE, Salinity:T0:C0, Bottle_Number, Oxygen:Dissolved, Flag:Oxygen:Dissolved, Salinity:Bottle, Flag:Salinity:Bottle Secondary Channels to Include: Chlorophyll:Extracted, Flag:Chlorophyll:Extracted Primary file : D:\Data\2002\2002-28\2002-28-0055.add Secondary file: D:\Data\2002\2002-28\2002-28-0055.chl -The following MERGE parameters were used: Merge Channel: Sample_Number Merge Scheme Used: Add Secondary to Primary Overlap Scheme Used: Keep Primary Primary Channels to Include: Pressure, Temperature:Primary, Transmissivity, Fluorescence:URU:Seapoint, Oxygen:Dissolved:SBE, Salinity:T0:C0, Bottle_Number, Oxygen:Dissolved, Flag:Oxygen:Dissolved, Salinity:Bottle, Flag:Salinity:Bottle, Chlorophyll:Extracted, Flag:Chlorophyll:Extracted Secondary Channels to Include: Nitrate_plus_Nitrite, Flag:Nitrate_plus_Nitrite, Silicate, Flag:Silicate, Phosphate, Flag:Phosphate Primary file : D:\Data\2002\2002-28\2002-28-0055.tab Secondary file: D:\Data\2002\2002-28\2002-28-0055.nut -The following CALIB parameters were used: Calibration type = Correct Mode: ONLY - calibration specs from Cal File only. Calibration file = L:\CRUISE_DATA\2002\2002-16\DOC\2002-16Tempcorr.CCF Calibrations applied: Ch Name Units Fmla Coefficents -- ----------------------------- --------- --- ----------------------------- 3 Temperature:Primary deg C (IT 10 -0.2700000E-02 0.1000000E+01 -The following SORT parameters were used. Sorted by channel: Pressure Pressure channel sorted according to values in sort channel -HEADER EDITS: 2021/11/25 13:16:31 Applied edit header: D:\Telework\2021-008\Processing\doc\HYDRO\2021-008-bot-hdr.txt -CLEAN functions: 2024/04/15 10:41:02 20 Reset #RECS, MIN & MAX values in header. Change Pad Value to -99 in All Channels. Set header Start and End times from the data. *FAILED* -CLEAN functions: 2024/04/15 10:52:50 20 Reset #RECS, MIN & MAX values in header. Change Pad Value to -99 in All Channels. Insert Pad Values in Channel: Oxygen:Dissolved [mL/L] where channel Oxygen:Dissolved [mL/L] is in the range -99.99 to -99.99 0 data records in pad range. Set header Start and End times from the data. *FAILED* -CLEAN functions: 2024/04/15 10:55:27 20 Reset #RECS, MIN & MAX values in header. Change Pad Value to -99 in All Channels. Insert Pad Values in Channel: Salinity:Bottle [PSS-78] where channel Salinity:Bottle [PSS-78] is in the range -9.9 to -9.9 14 data records in pad range. Set header Start and End times from the data. *FAILED* -CLEAN functions: 2024/04/15 10:56:53 20 Reset #RECS, MIN & MAX values in header. Change Pad Value to -99 in All Channels. Insert Pad Values in Channel: Chlorophyll:Extracted [mg/m^3] where channel Chlorophyll:Extracted [mg/m^3] is in the range -9.9 to -9.9 15 data records in pad range. Set header Start and End times from the data. *FAILED* -CLEAN functions: 2024/04/15 10:57:45 20 Reset #RECS, MIN & MAX values in header. Change Pad Value to -99 in All Channels. Insert Pad Values in Channel: Nitrate_plus_Nitrite [umol/L] where channel Nitrate_plus_Nitrite [umol/L] is in the range -9.9 to -9.9 0 data records in pad range. Set header Start and End times from the data. *FAILED* -CLEAN functions: 2024/04/15 10:58:17 20 Reset #RECS, MIN & MAX values in header. Change Pad Value to -99 in All Channels. Insert Pad Values in Channel: Silicate [umol/L] where channel Silicate [umol/L] is in the range -9.9 to -9.9 0 data records in pad range. Set header Start and End times from the data. *FAILED* -CLEAN functions: 2024/04/15 10:58:44 20 Reset #RECS, MIN & MAX values in header. Change Pad Value to -99 in All Channels. Insert Pad Values in Channel: Phosphate [umol/L] where channel Phosphate [umol/L] is in the range -9.9 to -9.9 0 data records in pad range. Set header Start and End times from the data. *FAILED* -HEADER EDITS: 2024/04/15 11:00:39 Channel 11: Salinity:Bottle [PSS-78] Format: f9.4 ==> F9.4 Channel 15: Nitrate_plus_Nitrite [umol/L] Format: f6.1 ==> F6.1 Channel 13: Chlorophyll:Extracted [mg/m^3] Format: f7.2 ==> F7.2 $END *COMMENTS Samples 707 and 709 Salinity:Bottle, values too low. Analysis methods: ----------------- Chlorophyll samples were filtered onto 25mm GF/F filters and stored in glass scintillation vials at -80C prior to analysis. Samples were extracted in 90% acetone at -20C for 24 hours in the lab and analyzed on a Turner 10AU fluorometer calibrated with commercially pure chlorophyll a standard (Sigma). Fluorescence readings taken before and after acidification were used to calculate chlorophyll and phaeopigment concentrations (Holm-Hansen et al 1965). Chlorophyll samples were analyzed at IOS in Room 2423 1 to 5 weeks after the cruise. Variability is assessed as the CV% (std dev / mean*100). Flags and comments apply to chlorophyll values only. Chlorophyll values ranged from 0.05-20.68 ug/l in 103 samples. Average %CV for this cruise was 5.86% (after one duplicate was rejected, original 8.25%) with 5 out of 23 duplicate pairs having a CV>10% and 0 duplicate pairs having a CV>30%. Our average dataset %CV is 3.83% for 2013 - 2020 so the overall quality of this dataset is acceptable. For details see worksheet “CV%” in file QF2021-008_CHL*.xlsx. Oxygen samples were analyzed at sea using an automated Winkler titration System (Metrohm Dosimat model 876 and a UV light source and detector with a 365nm filter controlled by LV02_876 software designed and constructed by Scripps Institution of Oceanography) with modifications based on Carpenter (1965) and adhering to WOCE protocols (Culberson 1991). For details including a duplicate analysis, see document QF2021-008OXY*.xlsx. Salinity samples were collected in 200 mL type ll glass bottles with disposable nylon inserts and screw caps supplied by Ocean Scientific International Limited. They were analyzed in a temperature-controlled lab on a Guildline 8400B Salinometer standardized with IAPSO standard seawater 68 - 75 days after collection. For details including a duplicate analysis, see document QF2020-008SAL*.xlsx. Nutrient samples were collected in plastic tubes and quick frozen in aluminum blocks stored in a -20C freezer. For samples 400m and deeper a second set of samples are collected and stored cool for silicate analysis. All samples were returned to the Insitute of Ocean Sciences and they were analyzed using an Astoria-Pacific Analyzer following methods described in IOS Nutrient Methods (1996) Barwell-Clarke and Whitney. For details including a duplicate analysis, see document QF2020-008nuts*.xlsx. DMS samples were collected in 250mL ground glass stoppered bottles and stored in a fridge, in the dark and removed one at a time before analysis. A sample was loaded onto the stripper and purged with UHP Nitrogen for 10 minutes at ~100mL/min. The DMS was extracted from the water and absorbed into a Tenax TA trap kept at -80C. The trap was subsequently desorbed at 100 deg C (with a dewar containing boiling water) onto a Chromosil 330 column which eluted onto a Flame Photometric Detector (FPD). All samples were run as soon as possible after being collected. The minimum detectable level for DMS is 0.10 nmol/L, so “0” values should be interpreted as <0.1nmol/L. DMS data are limited to 2 significant figures. Unless otherwise indicated the % relative difference between duplicates is <20%. For more detail see file "2021-008 DMS report*.doc" and for data and duplicate analysis see "QF2021-008_DMS_summary*.xls." DMSP-D: Approximately 50-100mL of seawater is drained from the niskin into a magnetic filtration funnel containing a 0.7um GF/F filter. The first 3.5mL is collected in a polypropylene tube containing 50uL of a 50% sulphuric acid solution. A new funnel and filter are used for each sample. DMSP-T: 3.5mL of seawater was collected directly from the Niskin into a polypropylene tube (15mL) containing 50uL of a 50% sulphuric acid solution. DMSP-D and DMSP-T: Samples are stored in the dark at 4 degrees C for a minimum of 24 hours. They are hydrolized and analyzed at the Institute of Ocean Sciences when time permits. The minimum detectable level is 0.1 nM, so “0” values should be interpreted as <0.1 nM. DMSP data are limited to 2 significant figures. Unless otherwise indicated the % relative difference between duplicates is <20%. For details on analysis and raw data, see document "QF2021-008_dmsp_summary*.xlsx. References: 1. Barwell-Clarke, J. and Whitney, F. 1996. Institute of Ocean Sciences Nutrient Methods and Analysis. Canadian Technical Report of Hydrography and Ocean Sciences, No. 182, 43 pp. 2. Carpenter, J.H. 1965. The Chesapeake Bay Institute Technique for the Winkler Dissolved Oxygen Method. Limmnol. & Oceanogr., 10: 141-143. 3. Culberson, C.H. 1991. Dissolved oxygen. WOCE Hydrographic Programme Operations and Methods (July 1991). 15pp. 4. Holm-Hansen, O., Lorenzen, C.J., Holmes, R.W., and Strickland J.D.H. 1965. Fluorometric Determination of Chlorophyll. J.du Cons. Intl. Pour l’Epl. De la Mer. 30:3-15. * For PDF versions of these papers see folder \\Cruise_Data\DOCUMENTS\Analysis Reference Papers --------------------------------------------------------------------------------- CTD Data Processing Notes: -------------------------- Conductivity, Transmissivity, Fluorescence:URU:Seapoint and PAR data are nominal and unedited except that some records were removed in editing temperature and salinity. There were 2 WetLabs CStar transmissometers in use during this cruise: Channel Transmissometer refers to sensor #1185DR (650nm - red) Channel Transmissometer:Green refers to sensor #1883DG (530nm - green) For comparison with other Institute of Ocean Sciences cruises, note that the transmissometer wavelength is 650nm unless otherwise stated. Channel Fluorescence:URU:Seapoint was removed from downcast files for casts #1 to 15 due to the presence of many spikes, but the problem did not occur during stops for bottles, so it was kept in the CHE files. NOTE: While the CTD fluorescence data are expressed in concentration units, they do not always compare well to extracted chlorophyll samples, particularly for casts far from shore. It is recommended that users check extracted chlorophyll values where available. For details on the processing see the report: 2021-008_Processing_Report.doc. --------------------------------------------------------------------------------- *CALIBRATION $TABLE: CORRECTED CHANNELS !Name Units Fmla Pad Coefficients !---------------------- --------------- ---- ------ ------------ Oxygen:Dissolved:SBE mL/L 10 -9.9 () (0.93E-01 1) Temperature:Primary 'deg C (ITS90)' 10 -9.9 () (-0.27E-02 1) $END !-1-- --2--- ---3---- --4--- ---5--- ---6--- ---7---- 8- ---9--- - ---11--- - --13-- - --15- - --17- - --19-- - !Samp Pressu Temperat Transm Fluores Oxygen: Salinity Bo Oxygen: F Salinity F Chloro F Nitra F Silic F Phosph F !le_ re ure: issivi cence: Dissolv :T0:C0 tt Dissolv l :Bottle l phyll: l te_ l ate l ate l !Numb Primary ty URU: ed:SBE ~u ed ~ ~ Extrac ~ plus_ ~ ~ ~ !er Seapoin mb e l ted e Nitri t t t ! t er d e d te e e e !---- ------ -------- ------ ------- ------- -------- -- ------- - -------- - ------ - ----- - ----- - ------ - *END OF HEADER 722 0.9 18.8226 49.6 1.269 6.074 21.3769 17 6.671 0 -99.0000 0 -99.00 0 0.0 0 11.9 0 0.22 0 721 5.3 16.0427 44.3 4.104 7.598 23.9179 16 7.170 0 -99.0000 0 1.91 0 1.4 0 13.2 0 0.56 0 720 10.3 11.7647 53.1 0.920 4.735 27.6909 15 4.395 0 -99.0000 0 0.64 0 20.1 0 41.3 0 1.99 0 719 20.3 9.7135 55.1 0.448 3.471 29.1835 14 3.583 0 -99.0000 0 -99.00 0 28.0 0 53.5 0 2.49 0 718 30.3 9.4194 55.5 0.240 3.439 29.5699 13 3.497 0 -99.0000 0 -99.00 0 29.1 0 52.1 0 2.58 0 717 50.1 8.9837 56.4 0.127 2.929 29.9503 12 3.031 0 -99.0000 0 -99.00 0 32.2 0 58.4 0 2.88 0 716 74.9 9.0869 57.2 0.097 2.312 30.2664 11 2.698 0 -99.0000 0 -99.00 0 33.1 0 63.3 0 2.92 0 715 100.3 9.1745 57.4 0.093 1.095 30.5936 10 1.020 0 -99.0000 0 -99.00 0 36.1 0 71.2 0 3.46 0 714 125.2 9.1585 57.2 0.091 1.259 30.7271 9 1.219 0 -99.0000 0 -99.00 0 34.9 0 72.5 0 3.32 0 713 150.2 9.1395 57.1 0.093 1.662 30.8215 8 1.661 0 -99.0000 0 -99.00 0 33.4 0 74.4 0 3.19 0 712 175.4 9.1332 57.0 0.091 1.757 30.8820 7 1.739 0 -99.0000 0 -99.00 0 32.5 0 73.3 0 3.16 0 711 200.1 9.1270 57.0 0.092 1.777 30.9379 6 1.760 0 -99.0000 0 -99.00 0 32.3 0 74.9 0 3.11 0 710 250.3 9.0959 56.5 0.083 1.961 31.0238 5 1.955 0 -99.0000 0 -99.00 0 31.1 0 76.3 0 2.94 0 709 300.4 9.0679 56.0 0.080 1.915 31.0518 4 1.913 0 -99.0000 0 -99.00 0 30.6 0 77.0 0 3.04 0 708 400.4 9.0624 54.7 0.082 2.077 31.0952 3 2.060 0 31.0522 0 -99.00 0 30.2 0 77.5 0 3.00 0 707 500.5 9.0642 54.1 0.088 2.133 31.1104 2 2.111 0 31.0941 0 -99.00 0 30.3 0 76.5 0 2.97 0 706 532.8 9.0712 46.7 0.101 1.925 31.1149 1 1.911 0 31.1045 0 -99.00 0 29.4 0 82.5 0 3.17 0